Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Chicken_E3_anterior_slice_2, section s3.

Sample reads: 124,240. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. MT-CO3 MT-CO3 3354.99 27004.19
2. MT-ATP6 MT-ATP6 2561.80 20619.83
3. MT-ND5 MT-ND5 2550.01 20524.94
4. ENSGALG00000018384 ENSGALG00000018384 2113.75 17013.50
5. EEF1A EEF1A 1817.91 14632.29
6. gga-mir-3527 gga-mir-3527 1551.02 12484.10
7. MT-CYB MT-CYB 1530.65 12320.14
8. MT-CO1 MT-CO1 1399.88 11267.58
9. MT-ND1 MT-ND1 1375.23 11069.18
10. gga-mir-3533 ENSGALG00000027736 1302.34 10482.49 gga-mir-3533 [Source:miRBase;Acc:MI0015386]
11. MT-ND4 MT-ND4 1261.61 10154.65
12. GAPDH ENSGALG00000014442 1220.88 9826.82 glyceraldehyde-3-phosphate dehydrogenase [Source:NCBI gene;Acc:374193]
13. MT-ND3 MT-ND3 851.08 6850.31
14. ENSGALG00000018386 ENSGALG00000018386 778.19 6263.62
15. PPIA ENSGALG00000028600 773.90 6229.09 peptidylprolyl isomerase A [Source:NCBI gene;Acc:776282]
16. NME2 ENSGALG00000002932 742.82 5978.93 NME/NM23 nucleoside diphosphate kinase 2 [Source:NCBI gene;Acc:395916]
17. RPL5 ENSGALG00000005922 639.91 5150.61 ribosomal protein L5 [Source:NCBI gene;Acc:395269]
18. RPL26 RPL26 593.82 4779.64
19. RPL8 ENSGALG00000016232 590.61 4753.80 ribosomal protein L8 [Source:NCBI gene;Acc:418568]
20. TMSB4X ENSGALG00000026383 588.46 4736.49 Gallus gallus thymosin beta 4, X-linked (TMSB4X), mRNA. [Source:RefSeq mRNA;Acc:NM_001001315]
21. MT-ND2 MT-ND2 568.10 4572.62
22. RPL15 ENSGALG00000011290 529.51 4262.01 ribosomal protein L15 [Source:NCBI gene;Acc:428442]
23. RPL27A ENSGALG00000005948 512.36 4123.97 ribosomal protein L27a [Source:NCBI gene;Acc:770018]
24. CIRBP ENSGALG00000030918 507.00 4080.82 cold inducible RNA binding protein [Source:NCBI gene;Acc:425789]
25. EIF4G2 ENSGALG00000005587 460.91 3709.85 eukaryotic translation initiation factor 4 gamma 2 [Source:NCBI gene;Acc:395905]
26. ENO1 ENSGALG00000002377 456.62 3675.32 enolase 1, (alpha) [Source:NCBI gene;Acc:396017]
27. RPS3 ENSGALG00000017330 448.05 3606.34 ribosomal protein S3 [Source:NCBI gene;Acc:419069]
28. RPS7 ENSGALG00000016392 445.90 3589.03 ribosomal protein S7 [Source:HGNC Symbol;Acc:HGNC:10440]
29. RPS4 RPS4 444.83 3580.42
30. STMN1 ENSGALG00000001475 437.33 3520.05 stathmin 1 [Source:NCBI gene;Acc:396057]
31. CRABP-I ENSGALG00000003193 428.75 3450.99 cellular retinoic acid binding protein 1 [Source:NCBI gene;Acc:374211]
32. HMGN5 ENSGALG00000007131 413.75 3330.26 high mobility group nucleosome binding domain 5, transcript variant X1
33. RPL7 ENSGALG00000035252 406.24 3269.81 ribosomal protein L7 [Source:NCBI gene;Acc:420182]
34. RAN ENSGALG00000002569 397.67 3200.83 RAN, member RAS oncogene family [Source:NCBI gene;Acc:396193]
35. RPS6 ENSGALG00000015082 395.52 3183.53 ribosomal protein S6 [Source:NCBI gene;Acc:396148]
36. RPL21 ENSGALG00000027035 389.09 3131.77 ribosomal protein L21 [Source:HGNC Symbol;Acc:HGNC:10313]
37. RPL27 ENSGALG00000002837 386.95 3114.55 ribosomal protein L27 [Source:NCBI gene;Acc:396280]
38. RPL31 ENSGALG00000016775 376.23 3028.26 ribosomal protein L31 [Source:NCBI gene;Acc:418710]
39. RPS20 ENSGALG00000014432 376.23 3028.26 ribosomal protein S20 [Source:HGNC Symbol;Acc:HGNC:10405]
40. RPL7A ENSGALG00000003197 373.02 3002.42 ribosomal protein L7a [Source:NCBI gene;Acc:417158]
41. RPL18A 368.73 2967.89 ribosomal protein L18a
42. RPS11 ENSGALG00000017299 354.79 2855.69 ribosomal protein S11 [Source:NCBI gene;Acc:419049]
43. RPS27A ENSGALG00000036790 352.65 2838.47 ribosomal protein S27a [Source:NCBI gene;Acc:395796]
44. LDHB ENSGALG00000035836 348.36 2803.94 lactate dehydrogenase B [Source:NCBI gene;Acc:373997]
45. RPL14 ENSGALG00000043379 348.36 2803.94 ribosomal protein L14
46. RPS23 ENSGALG00000015617 337.64 2717.65 ribosomal protein S23
47. RPS10 ENSGALG00000002813 320.49 2579.61 ribosomal protein S10 [Source:NCBI gene;Acc:419904]
48. H3-IX H3-IX 316.21 2545.16
49. MDK ENSGALG00000008367 310.85 2502.02 midkine [Source:NCBI gene;Acc:423196]
50. RPSA 297.98 2398.43 ribosomal protein SA
51. RPL32 ENSGALG00000027142 296.91 2389.82 ribosomal protein L32 [Source:NCBI gene;Acc:416122]
52. RPS24 ENSGALG00000004871 290.48 2338.06 ribosomal protein S24 [Source:NCBI gene;Acc:423726]
53. RPL23A ENSGALG00000003966 289.41 2329.45 ribosomal protein L23a [Source:HGNC Symbol;Acc:HGNC:10317]
54. RPS16 ENSGALG00000026490 289.41 2329.45 ribosomal protein S16 [Source:HGNC Symbol;Acc:HGNC:10396]
55. RPS15A ENSGALG00000006771 282.98 2277.70 ribosomal protein S15a [Source:HGNC Symbol;Acc:HGNC:10389]
56. SLC25A6_1 ENSGALG00000016691 281.91 2269.08 solute carrier family 25 member 6 [Source:NCBI gene;Acc:374072]
57. RPL23 ENSGALG00000001634 271.19 2182.80 Gallus gallus ribosomal protein L23 (RPL23), mRNA. [Source:RefSeq mRNA;Acc:NM_001321599]
58. H2AFZ ENSGALG00000014023 270.11 2174.11 H2A histone family, member Z [Source:NCBI gene;Acc:426361]
59. ATP6V0C ENSGALG00000009229 269.04 2165.49 ATPase H+ transporting V0 subunit c [Source:NCBI gene;Acc:416753]
60. HMGN2 HMGN2 267.97 2156.88
61. RPS15 ENSGALG00000015195 265.83 2139.66 ribosomal protein S15 [Source:NCBI gene;Acc:396448]
62. ENSGALG00000028992 ENSGALG00000028992 264.76 2131.04
63. RPL4 ENSGALG00000007711 263.68 2122.35 ribosomal protein L4 [Source:NCBI gene;Acc:415551]
64. ANP32B ENSGALG00000037483 260.47 2096.51 acidic (leucine-rich) nuclear phosphoprotein 32 family, member B [Source:NCBI gene;Acc:420087]
65. EEF1B2 ENSGALG00000008590 258.32 2079.21 Gallus gallus eukaryotic translation elongation factor 1 beta 2 (EEF1B2), mRNA. [Source:RefSeq mRNA;Acc:NM_204901]
66. SNRPG ENSGALG00000028409 258.32 2079.21 small nuclear ribonucleoprotein polypeptide G [Source:NCBI gene;Acc:771344]
67. ATP5G3 257.25 2070.60 ATP synthase, H+ transporting, mitochondrial Fo complex subunit C3 (subunit 9), transcript variant 3
68. EIF1 ENSGALG00000028517 237.96 1915.33 eukaryotic translation initiation factor 1 [Source:NCBI gene;Acc:420037]
69. RPLP1 ENSGALG00000030878 236.89 1906.72 ribosomal protein lateral stalk subunit P1 [Source:NCBI gene;Acc:396262]
70. MIF ENSGALG00000006326 230.45 1854.88 macrophage migration inhibitory factor (glycosylation-inhibiting factor) [Source:NCBI gene;Acc:100857237]
71. RPS3A ENSGALG00000010077 229.38 1846.27 ribosomal protein S3A [Source:NCBI gene;Acc:422477]
72. ERH ENSGALG00000017384 225.10 1811.82 ERH, mRNA splicing and mitosis factor [Source:NCBI gene;Acc:423262]
73. RPS29 ENSGALG00000012229 225.10 1811.82 ribosomal protein S29 [Source:NCBI gene;Acc:776054]
74. HMGB2 ENSGALG00000010745 220.81 1777.29 high mobility group box 2 [Source:NCBI gene;Acc:396482]
75. RPL6 ENSGALG00000004818 220.81 1777.29 ribosomal protein L6 [Source:NCBI gene;Acc:373957]
76. RPS12 ENSGALG00000013990 220.81 1777.29 ribosomal protein S12 [Source:NCBI gene;Acc:421698]
77. RPL3 ENSGALG00000012172 218.66 1759.99 ribosomal protein L3 [Source:NCBI gene;Acc:418016]
78. ENSGALG00000002696 ENSGALG00000002696 215.45 1734.15
79. HNRNPDL ENSGALG00000023199 213.30 1716.84 heterogeneous nuclear ribonucleoprotein D like [Source:NCBI gene;Acc:422601]
80. HMGB1 ENSGALG00000042875 212.23 1708.23 high mobility group box 1 [Source:NCBI gene;Acc:395724]
81. RPS8 ENSGALG00000010124 211.16 1699.62 ribosomal protein S8 [Source:NCBI gene;Acc:424584]
82. RPL10A ENSGALG00000002644 204.73 1647.86 ribosomal protein L10a [Source:HGNC Symbol;Acc:HGNC:10299]
83. CALM CALM 201.51 1621.95
84. CRHOA CRHOA 200.44 1613.33
85. RPLP2 ENSGALG00000034811 200.44 1613.33 ribosomal protein lateral stalk subunit P2 [Source:HGNC Symbol;Acc:HGNC:10377]
86. IGF2BP3 ENSGALG00000010961 199.37 1604.72 insulin like growth factor 2 mRNA binding protein 3 [Source:NCBI gene;Acc:420617]
87. TPT1 ENSGALG00000028872 197.23 1587.50 tumor protein, translationally-controlled 1 [Source:NCBI gene;Acc:396363]
88. MEIS2 ENSGALG00000039118 195.08 1570.19 Meis homeobox 2 [Source:NCBI gene;Acc:395588]
89. PRDX1 ENSGALG00000010243 194.01 1561.58 peroxiredoxin 1 [Source:NCBI gene;Acc:424598]
90. RPL35A ENSGALG00000007611, ENSGALG00000041230 194.01 1561.58 ribosomal protein L35a [Source:NCBI gene;Acc:424924]
91. TCEB3 ENSGALG00000034625 186.51 1501.21 transcription elongation factor B subunit 3 [Source:NCBI gene;Acc:419683]
92. NONO ENSGALG00000005507 185.44 1492.60 non-POU domain containing octamer binding [Source:NCBI gene;Acc:428701]
93. RPS14 ENSGALG00000004588 182.22 1466.68 ribosomal protein S14 [Source:NCBI gene;Acc:416275]
94. KPNA2 ENSGALG00000003584 181.15 1458.07 karyopherin subunit alpha 2 [Source:NCBI gene;Acc:417420]
95. RPL13 ENSGALG00000006179 180.08 1449.46 ribosomal protein L13 [Source:NCBI gene;Acc:395849]
96. RPL36 ENSGALG00000000474 179.00 1440.76 ribosomal protein L36 [Source:NCBI gene;Acc:373936]
97. RPL9 ENSGALG00000000150 179.00 1440.76 ribosomal protein L9 [Source:NCBI gene;Acc:425468]
98. RPL12 ENSGALG00000008806 177.93 1432.15 ribosomal protein L12 [Source:NCBI gene;Acc:417264]
99. NUCKS1 ENSGALG00000000708 175.79 1414.93 nuclear casein kinase and cyclin dependent kinase substrate 1 [Source:NCBI gene;Acc:404775]
100. EIF5A2 ENSGALG00000009309 174.72 1406.31 eukaryotic translation initiation factor 5A [Source:NCBI gene;Acc:396545]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA