Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Chicken_E3_anterior_slice_1, section s1.

Sample reads: 124,238. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. MT-CO3 MT-CO3 2864.67 23058.13
2. RPLP0 ENSGALG00000023294 1186.09 9547.01 ribosomal protein lateral stalk subunit P0 [Source:NCBI gene;Acc:395835]
3. RPLP1 ENSGALG00000030878 1162.18 9354.55 ribosomal protein lateral stalk subunit P1 [Source:NCBI gene;Acc:396262]
4. MT-ATP6 MT-ATP6 1039.87 8370.06
5. GAPDH ENSGALG00000014442 970.84 7814.43 glyceraldehyde-3-phosphate dehydrogenase [Source:NCBI gene;Acc:374193]
6. RPL35A ENSGALG00000007611, ENSGALG00000041230 969.21 7801.31 ribosomal protein L35a [Source:NCBI gene;Acc:424924]
7. EEF1A EEF1A 966.49 7779.41
8. RPL4 ENSGALG00000007711 957.25 7705.04 ribosomal protein L4 [Source:NCBI gene;Acc:415551]
9. RPS10 ENSGALG00000002813 938.22 7551.87 ribosomal protein S10 [Source:NCBI gene;Acc:419904]
10. RPS8 ENSGALG00000010124 867.01 6978.69 ribosomal protein S8 [Source:NCBI gene;Acc:424584]
11. RPS23 ENSGALG00000015617 837.12 6738.10 ribosomal protein S23
12. gga-mir-3533 ENSGALG00000027736 800.70 6444.95 gga-mir-3533 [Source:miRBase;Acc:MI0015386]
13. RPS28 ENSGALG00000024398 780.58 6283.00 ribosomal protein S28 [Source:NCBI gene;Acc:768930]
14. RPS15 ENSGALG00000015195 741.99 5972.38 ribosomal protein S15 [Source:NCBI gene;Acc:396448]
15. RPL23A ENSGALG00000003966 696.33 5604.86 ribosomal protein L23a [Source:HGNC Symbol;Acc:HGNC:10317]
16. RPL27A ENSGALG00000005948 693.61 5582.97 ribosomal protein L27a [Source:NCBI gene;Acc:770018]
17. RPS12 ENSGALG00000013990 666.97 5368.54 ribosomal protein S12 [Source:NCBI gene;Acc:421698]
18. RPL13 ENSGALG00000006179 655.56 5276.70 ribosomal protein L13 [Source:NCBI gene;Acc:395849]
19. RPL32 ENSGALG00000027142 636.53 5123.52 ribosomal protein L32 [Source:NCBI gene;Acc:416122]
20. gga-mir-3527 gga-mir-3527 625.66 5036.03
21. MT-ND5 MT-ND5 625.12 5031.68
22. RPS2 ENSGALG00000005490 621.31 5001.01 ribosomal protein S2 [Source:NCBI gene;Acc:416544]
23. RPL7A ENSGALG00000003197 620.77 4996.67 ribosomal protein L7a [Source:NCBI gene;Acc:417158]
24. RPL15 ENSGALG00000011290 597.94 4812.90 ribosomal protein L15 [Source:NCBI gene;Acc:428442]
25. RPL29 ENSGALG00000026978 590.33 4751.65 ribosomal protein L29 [Source:NCBI gene;Acc:770249]
26. RPL8 ENSGALG00000016232 578.91 4659.73 ribosomal protein L8 [Source:NCBI gene;Acc:418568]
27. RPL26 RPL26 565.32 4550.34
28. RPL27 ENSGALG00000002837 564.78 4545.99 ribosomal protein L27 [Source:NCBI gene;Acc:396280]
29. MT-CYB MT-CYB 545.21 4388.47
30. RPSA 539.78 4344.77 ribosomal protein SA
31. RPL19 ENSGALG00000001658 525.64 4230.95 ribosomal protein L19 [Source:NCBI gene;Acc:420003]
32. RPS16 ENSGALG00000026490 522.38 4204.71 ribosomal protein S16 [Source:HGNC Symbol;Acc:HGNC:10396]
33. RPS29 ENSGALG00000012229 519.12 4178.47 ribosomal protein S29 [Source:NCBI gene;Acc:776054]
34. RPL38 ENSGALG00000001465 514.23 4139.11 ribosomal protein L38 [Source:NCBI gene;Acc:771528]
35. RPS21 ENSGALG00000005338 509.34 4099.75 ribosomal protein S21 [Source:HGNC Symbol;Acc:HGNC:10409]
36. RPS15A ENSGALG00000006771 499.01 4016.60 ribosomal protein S15a [Source:HGNC Symbol;Acc:HGNC:10389]
37. RPS11 ENSGALG00000017299 497.92 4007.83 ribosomal protein S11 [Source:NCBI gene;Acc:419049]
38. SNRPD1 ENSGALG00000041334 495.20 3985.93 small nuclear ribonucleoprotein D1 polypeptide [Source:NCBI gene;Acc:776411]
39. PPIA ENSGALG00000028600 489.22 3937.80 peptidylprolyl isomerase A [Source:NCBI gene;Acc:776282]
40. MDK ENSGALG00000008367 488.68 3933.45 midkine [Source:NCBI gene;Acc:423196]
41. RPS4 RPS4 485.42 3907.21
42. RPL21 ENSGALG00000027035 478.35 3850.31 ribosomal protein L21 [Source:HGNC Symbol;Acc:HGNC:10313]
43. RPS6 ENSGALG00000015082 472.37 3802.17 ribosomal protein S6 [Source:NCBI gene;Acc:396148]
44. RPL35 ENSGALG00000035677 471.83 3797.83 ribosomal protein L35 [Source:NCBI gene;Acc:374133]
45. MT-ND4 MT-ND4 462.04 3719.03
46. RPL14 ENSGALG00000043379 456.06 3670.89 ribosomal protein L14
47. RPL36AL ENSGALG00000004952 443.56 3570.28 ribosomal protein L36a like [Source:HGNC Symbol;Acc:HGNC:10346]
48. RPS3A ENSGALG00000010077 440.84 3548.38 ribosomal protein S3A [Source:NCBI gene;Acc:422477]
49. RPL36 ENSGALG00000000474 428.89 3452.20 ribosomal protein L36 [Source:NCBI gene;Acc:373936]
50. RPL18A 423.45 3408.41 ribosomal protein L18a
51. RPL24 ENSGALG00000015339 422.91 3404.06 ribosomal protein L24 [Source:NCBI gene;Acc:418401]
52. ANP32B ENSGALG00000037483 419.64 3377.74 acidic (leucine-rich) nuclear phosphoprotein 32 family, member B [Source:NCBI gene;Acc:420087]
53. MT-CO1 MT-CO1 413.67 3329.69
54. GNB2L1 ENSGALG00000000122 412.58 3320.91 receptor for activated C kinase 1 [Source:NCBI gene;Acc:417044]
55. RPS27A ENSGALG00000036790 404.42 3255.23 ribosomal protein S27a [Source:NCBI gene;Acc:395796]
56. RPL12 ENSGALG00000008806 382.68 3080.25 ribosomal protein L12 [Source:NCBI gene;Acc:417264]
57. NME2 ENSGALG00000002932 381.05 3067.13 NME/NM23 nucleoside diphosphate kinase 2 [Source:NCBI gene;Acc:395916]
58. ENO1 ENSGALG00000002377 379.96 3058.35 enolase 1, (alpha) [Source:NCBI gene;Acc:396017]
59. CIRBP ENSGALG00000030918 369.64 2975.28 cold inducible RNA binding protein [Source:NCBI gene;Acc:425789]
60. RPL5 ENSGALG00000005922 366.37 2948.96 ribosomal protein L5 [Source:NCBI gene;Acc:395269]
61. MT-ND3 MT-ND3 360.39 2900.83
62. RPS7 ENSGALG00000016392 357.13 2874.59 ribosomal protein S7 [Source:HGNC Symbol;Acc:HGNC:10440]
63. ENSGALG00000018384 ENSGALG00000018384 354.41 2852.70
64. RPS14 ENSGALG00000004588 351.70 2830.88 ribosomal protein S14 [Source:NCBI gene;Acc:416275]
65. RPL6 ENSGALG00000004818 348.98 2808.99 ribosomal protein L6 [Source:NCBI gene;Acc:373957]
66. TMSB4X ENSGALG00000026383 347.89 2800.22 Gallus gallus thymosin beta 4, X-linked (TMSB4X), mRNA. [Source:RefSeq mRNA;Acc:NM_001001315]
67. RPS25 ENSGALG00000007699 342.46 2756.51 ribosomal protein S25 [Source:HGNC Symbol;Acc:HGNC:10413]
68. RPS13 ENSGALG00000006096 341.37 2747.74 ribosomal protein S13 [Source:NCBI gene;Acc:414782]
69. RPS20 ENSGALG00000014432 335.39 2699.60 ribosomal protein S20 [Source:HGNC Symbol;Acc:HGNC:10405]
70. HMGN2 HMGN2 328.87 2647.12
71. ENSGALG00000028992 ENSGALG00000028992 327.24 2634.00
72. ENSGALG00000028649 ENSGALG00000028649 325.61 2620.88
73. RPLP2 ENSGALG00000034811 325.06 2616.45 ribosomal protein lateral stalk subunit P2 [Source:HGNC Symbol;Acc:HGNC:10377]
74. RPL23 ENSGALG00000001634 323.43 2603.33 Gallus gallus ribosomal protein L23 (RPL23), mRNA. [Source:RefSeq mRNA;Acc:NM_001321599]
75. RPL37 ENSGALG00000014833 322.89 2598.99 ribosomal protein L37 [Source:NCBI gene;Acc:427186]
76. ENSGALG00000002696 ENSGALG00000002696 317.99 2559.55
77. RAN ENSGALG00000002569 317.99 2559.55 RAN, member RAS oncogene family [Source:NCBI gene;Acc:396193]
78. TCEB3 ENSGALG00000034625 314.73 2533.31 transcription elongation factor B subunit 3 [Source:NCBI gene;Acc:419683]
79. RPL37A ENSGALG00000011472 307.67 2476.48 ribosomal protein L37a [Source:NCBI gene;Acc:769981]
80. ALDOC ENSGALG00000026077 294.08 2367.09 aldolase, fructose-bisphosphate C [Source:NCBI gene;Acc:395492]
81. STMN1 ENSGALG00000001475 285.92 2301.41 stathmin 1 [Source:NCBI gene;Acc:396057]
82. TXN ENSGALG00000015704 284.84 2292.72 thioredoxin [Source:NCBI gene;Acc:396437]
83. MT-ND6 MT-ND6 282.12 2270.82
84. EIF5A2 ENSGALG00000009309 281.58 2266.48 eukaryotic translation initiation factor 5A [Source:NCBI gene;Acc:396545]
85. PRDX1 ENSGALG00000010243 274.51 2209.57 peroxiredoxin 1 [Source:NCBI gene;Acc:424598]
86. HMGN5 ENSGALG00000007131 265.81 2139.54 high mobility group nucleosome binding domain 5, transcript variant X1
87. MT-ND1 MT-ND1 263.09 2117.65
88. RPL31 ENSGALG00000016775 262.01 2108.96 ribosomal protein L31 [Source:NCBI gene;Acc:418710]
89. RPL7 ENSGALG00000035252 257.66 2073.94 ribosomal protein L7 [Source:NCBI gene;Acc:420182]
90. LDHB ENSGALG00000035836 252.77 2034.58 lactate dehydrogenase B [Source:NCBI gene;Acc:373997]
91. UBB ENSGALG00000004509 248.96 2003.91 Gallus gallus ubiquitin B (UBB), mRNA. [Source:RefSeq mRNA;Acc:NM_001353988]
92. RPL10A ENSGALG00000002644 248.42 1999.57 ribosomal protein L10a [Source:HGNC Symbol;Acc:HGNC:10299]
93. ENSGALG00000018386 ENSGALG00000018386 229.93 1850.74
94. PKM ENSGALG00000001992 227.76 1833.27 pyruvate kinase M1/2 [Source:NCBI gene;Acc:396456]
95. MIF ENSGALG00000006326 223.96 1802.69 macrophage migration inhibitory factor (glycosylation-inhibiting factor) [Source:NCBI gene;Acc:100857237]
96. HMGB2 ENSGALG00000010745 215.80 1737.00 high mobility group box 2 [Source:NCBI gene;Acc:396482]
97. RPS17 ENSGALG00000002157 215.80 1737.00 ribosomal protein S17 [Source:NCBI gene;Acc:374053]
98. EEF1D 213.63 1719.54 eukaryotic translation elongation factor 1 delta, transcript variant X13
99. DYL1 ENSGALG00000007153 210.37 1693.30 dynein light chain 1 cytoplasmic [Source:NCBI gene;Acc:427708]
100. H2AFZ ENSGALG00000014023 206.02 1658.28 H2A histone family, member Z [Source:NCBI gene;Acc:426361]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA