Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

Zebrafish data search


search
Exact
Search
Limit to:

{{libname.name}} 

Results for usp9

Gene Name Gene ID Reads Annotation
usp9 ENSDARG00000013708 9057 ubiquitin specific peptidase 9 [Source:ZFIN;Acc:ZDB-GENE-061019-1]










Genes with expression patterns similar to usp9

Nr. Gene Name Gene ID Reads Σ scores 28hpf trunk1 28hpf trunk2 28hpf whole1 28hpf whole2 28hpf whole3 PA 40hpf trunk1 40hpf trunk2 40hpf whole embryo1 40hpf whole embryo2 Annotation
1. usp9 ENSDARG00000013708 9057 9 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 ubiquitin specific peptidase 9 [Source:ZFIN;Acc:ZDB-GENE-061019-1]
2. myh10 ENSDARG00000000103 7522 2.512 0.742 0.973 - - - 0.797 - - - myosin, heavy chain 10, non-muscle [Source:ZFIN;Acc:ZDB-GENE-030616-162]
3. arih2 ENSDARG00000012848 7087 2.495 - 0.978 - - - 0.788 - 0.729 - ariadne homolog 2 (Drosophila) [Source:ZFIN;Acc:ZDB-GENE-040426-2158]
4. csnk1da ENSDARG00000008370 3469 2.379 - - - - - 0.755 0.715 - 0.909 casein kinase 1, delta a [Source:ZFIN;Acc:ZDB-GENE-030131-825]
5. ubr4 ENSDARG00000009549 5565 2.265 0.733 - - - - 0.759 0.773 - - ubiquitin protein ligase E3 component n-recognin 4 [Source:ZFIN;Acc:ZDB-GENE-090313-341]
6. actr2a ENSDARG00000052438 5838 1.828 - 0.934 - - - - - - 0.894 ARP2 actin related protein 2a homolog [Source:ZFIN;Acc:ZDB-GENE-040426-2894]
7. rgs12b ENSDARG00000036774 5088 1.808 - - 0.998 - - - - - 0.810 regulator of G protein signaling 12b [Source:ZFIN;Acc:ZDB-GENE-031006-13]
8. eif2s1a ENSDARG00000005827 5992 1.763 - - 0.999 - - - 0.764 - - eukaryotic translation initiation factor 2, subunit 1 alpha a [Source:ZFIN;Acc:ZDB-GENE-030131-526]
9. krcp ENSDARG00000040224 5961 1.741 - - 0.998 - - 0.743 - - - kelch repeat-containing protein [Source:ZFIN;Acc:ZDB-GENE-030131-2126]
10. med23 ENSDARG00000029157 4453 1.734 - - 0.948 - - - 0.786 - - mediator complex subunit 23 [Source:ZFIN;Acc:ZDB-GENE-040724-82]
11. snrpc ENSDARG00000009871 9567 1.724 - - 0.997 - - - 0.727 - - small nuclear ribonucleoprotein polypeptide C [Source:ZFIN;Acc:ZDB-GENE-020419-26]
12. vps35 ENSDARG00000008224 13245 1.722 - - 0.997 - - - 0.725 - - vacuolar protein sorting 35 homolog (S. cerevisiae) [Source:ZFIN;Acc:ZDB-GENE-030131-2042]
13. pgam5 ENSDARG00000035608 4044 1.71 - 0.975 - - - - 0.735 - - PGAM family member 5, serine/threonine protein phosphatase, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-030131-683]
14. csnk1a1_1 ENSDARG00000052674, ENSDARG00000112077 5195 1.696 - - - - - - 0.840 - 0.856 casein kinase 1, alpha 1 [Source:ZFIN;Acc:ZDB-GENE-020419-19]
15. psmc2 ENSDARG00000020101 8095 1.695 - 0.938 - - - - 0.757 - - proteasome 26S subunit, ATPase 2 [Source:ZFIN;Acc:ZDB-GENE-040426-1327]
16. anp32b ENSDARG00000023330 25013 1.693 - - 0.992 - - 0.701 - - - acidic (leucine-rich) nuclear phosphoprotein 32 family, member B [Source:ZFIN;Acc:ZDB-GENE-030131-719]
17. CR387996.1 ENSDARG00000097774 3037 1.689 - 0.975 - - - - - 0.714 -
18. snrpa1 ENSDARG00000024651 3306 1.688 - 0.984 - - - 0.704 - - - small nuclear ribonucleoprotein polypeptide A' [Source:ZFIN;Acc:ZDB-GENE-041114-82]
19. anp32e ENSDARG00000054804 11017 1.661 - - - - - - 0.806 - 0.855 acidic (leucine-rich) nuclear phosphoprotein 32 family, member E [Source:ZFIN;Acc:ZDB-GENE-040426-2448]
20. chchd2 ENSDARG00000059304, ENSDARG00000112202 7438 1.641 - - - - - 0.796 - - 0.845 coiled-coil-helix-coiled-coil-helix domain containing 2 [Source:ZFIN;Acc:ZDB-GENE-040426-1737]
21. erlin1 ENSDARG00000021991 5664 1.639 - - - - - 0.801 0.838 - - ER lipid raft associated 1 [Source:ZFIN;Acc:ZDB-GENE-050327-13]
22. TDG TDG 1191 1.616 - - - - - - - 0.757 0.859
23. lzts2a ENSDARG00000074597, ENSDARG00000113794 7477 1.608 - - - - - 0.739 - - 0.869 leucine zipper, putative tumor suppressor 2a [Source:ZFIN;Acc:ZDB-GENE-090313-276]
24. ptena ENSDARG00000071018, ENSDARG00000114986, ENSDARG00000115966 6610 1.6 - - - 0.713 - - 0.887 - - phosphatase and tensin homolog A [Source:ZFIN;Acc:ZDB-GENE-030131-3776]
25. prp19 prp19 4804 1.599 - - - - - 0.722 - - 0.877
26. yth2 yth2 3716 1.599 - - - - - - 0.728 - 0.871
27. ktn1 ENSDARG00000032802 6251 1.598 - - - - - - 0.720 - 0.878 kinectin 1 [Source:ZFIN;Acc:ZDB-GENE-030408-4]
28. SYDE2 ENSDARG00000099479 1891 1.596 - - - - - 0.813 0.783 - - synapse defective Rho GTPase homolog 2 [Source:HGNC Symbol;Acc:HGNC:25841]
29. atp6v1d ENSDARG00000011175 8331 1.595 - - - - - 0.866 - 0.729 - ATPase H+ transporting V1 subunit D [Source:ZFIN;Acc:ZDB-GENE-040426-727]
30. sub1a ENSDARG00000053446 13383 1.593 - 0.786 - - - 0.807 - - - SUB1 homolog, transcriptional regulator a [Source:ZFIN;Acc:ZDB-GENE-050522-151]
31. adam10a ENSDARG00000053468 9308 1.589 - - - - - - 0.727 - 0.862 ADAM metallopeptidase domain 10a [Source:ZFIN;Acc:ZDB-GENE-040917-2]
32. ostc ENSDARG00000104901 16240 1.586 - 0.879 - - - - - - 0.707 oligosaccharyltransferase complex subunit [Source:ZFIN;Acc:ZDB-GENE-040426-1079]
33. RALGAPB ENSDARG00000088899 1456 1.584 - - - - - 0.838 0.746 - - Ral GTPase activating protein, beta subunit (non-catalytic) [Source:ZFIN;Acc:ZDB-GENE-130530-945]
34. ammecr1 ENSDARG00000012892 14475 1.576 - - - - - 0.709 - - 0.867 Alport syndrome, mental retardation, midface hypoplasia and elliptocytosis chromosomal region gene 1 homolog (human) [Source:ZFIN;Acc:ZDB-GENE-040426-1533]
35. yy1a ENSDARG00000042796 4982 1.575 - - - - - 0.811 - 0.764 - YY1 transcription factor a [Source:ZFIN;Acc:ZDB-GENE-030131-1117]
36. GOLPH3 ENSDARG00000052851, ENSDARG00000109334 3117 1.574 - - - - - - 0.785 - 0.789 golgi phosphoprotein 3 [Source:ZFIN;Acc:ZDB-GENE-041010-209]
37. tchp ENSDARG00000035605 1695 1.567 - - - - - - - 0.749 0.818 trichoplein, keratin filament binding [Source:ZFIN;Acc:ZDB-GENE-060421-3368]
38. ube4b ENSDARG00000037017 8012 1.563 - - - - - 0.771 0.792 - - ubiquitination factor E4B, UFD2 homolog (S. cerevisiae) [Source:ZFIN;Acc:ZDB-GENE-020205-1]
39. CABZ01013938.1 CABZ01013938.1 4497 1.562 - - - - - 0.768 0.794 - -
40. cited4a ENSDARG00000035990 2762 1.56 - - - - - 0.737 - - 0.823 Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 4a [Source:ZFIN;Acc:ZDB-GENE-030131-7661]
41. cbfa2t2 ENSDARG00000074337 4323 1.557 - - - - - - 0.804 0.753 - core-binding factor, runt domain, alpha subunit 2; translocated to, 2 [Source:ZFIN;Acc:ZDB-GENE-070209-1]
42. aktip ENSDARG00000026862, ENSDARG00000115058 2775 1.555 - - - - - 0.702 - - 0.853 akt interacting protein [Source:ZFIN;Acc:ZDB-GENE-030909-5]
43. cpne3 ENSDARG00000104177, ENSDARG00000109906, ENSDARG00000110868 1084 1.55 - - - - - 0.738 - - 0.812 copine III [Source:ZFIN;Acc:ZDB-GENE-040426-763]
44. ube2z ENSDARG00000029215 1059 1.55 - - - - - - - 0.735 0.815 ubiquitin-conjugating enzyme E2Z [Source:ZFIN;Acc:ZDB-GENE-040718-15]
45. FOXK2 ENSDARG00000030583 5500 1.549 - - - - - 0.817 0.732 - - forkhead box K2 [Source:ZFIN;Acc:ZDB-GENE-030131-2861]
46. rab5ab ENSDARG00000007257 1402 1.548 - - - - - - 0.723 - 0.825 RAB5A, member RAS oncogene family, b [Source:ZFIN;Acc:ZDB-GENE-040122-3]
47. gdi2 ENSDARG00000005451, ENSDARG00000113039 11258 1.545 - - - 0.727 - - 0.818 - - GDP dissociation inhibitor 2 [Source:ZFIN;Acc:ZDB-GENE-030131-2485]
48. map3k3 ENSDARG00000060348 1482 1.544 - - - - - - 0.731 - 0.813 mitogen-activated protein kinase kinase kinase 3 [Source:ZFIN;Acc:ZDB-GENE-070910-1]
49. hsbp1b ENSDARG00000041921 6170 1.54 - - - - - 0.741 0.799 - - heat shock factor binding protein 1b [Source:ZFIN;Acc:ZDB-GENE-040426-1721]
50. prelid1a ENSDARG00000098671 4745 1.538 - - - - - 0.803 0.735 - - PRELI domain containing 1a [Source:ZFIN;Acc:ZDB-GENE-040426-1341]
51. TNRC6A ENSDARG00000079688 14433 1.524 - - - - - 0.732 0.792 - - trinucleotide repeat containing 6a [Source:ZFIN;Acc:ZDB-GENE-030131-2519]
52. aldh4a1 ENSDARG00000038207 4639 1.513 - - - - - 0.724 - - 0.789 aldehyde dehydrogenase 4 family, member A1 [Source:ZFIN;Acc:ZDB-GENE-040426-1179]
53. ube2g1a ENSDARG00000015292, ENSDARG00000112281 3207 1.512 - - - 0.701 - 0.811 - - - ubiquitin-conjugating enzyme E2G 1a (UBC7 homolog, yeast) [Source:ZFIN;Acc:ZDB-GENE-030131-6065]
54. ctnna1 ENSDARG00000102441 7984 1.5 - - - - - 0.763 0.737 - - catenin (cadherin-associated protein), alpha 1 [Source:ZFIN;Acc:ZDB-GENE-991207-24]
55. get4 ENSDARG00000024398 1818 1.496 - - - - - 0.778 - 0.718 - golgi to ER traffic protein 4 homolog (S. cerevisiae) [Source:ZFIN;Acc:ZDB-GENE-030131-5399]
56. b2ml ENSDARG00000015887 1060 1.494 - - - - - 0.773 - 0.721 - beta-2-microglobulin, like [Source:ZFIN;Acc:ZDB-GENE-040426-2136]
57. mapkapk2a ENSDARG00000002552, ENSDARG00000116786 4233 1.489 - - - - - 0.743 0.746 - - mitogen-activated protein kinase-activated protein kinase 2a [Source:ZFIN;Acc:ZDB-GENE-030131-5532]
58. si:rp71-45k5.4 ENSDARG00000035679 10411 1.486 - - - - - 0.754 - - 0.732 si:rp71-45k5.4 [Source:ZFIN;Acc:ZDB-GENE-060503-941]
59. sept8a ENSDARG00000032606 2737 1.485 - - - - - 0.702 0.783 - - septin 8a [Source:ZFIN;Acc:ZDB-GENE-030131-309]
60. mcm3ap ENSDARG00000021402 1271 1.479 - - - - - 0.735 0.744 - - minichromosome maintenance complex component 3 associated protein [Source:ZFIN;Acc:ZDB-GENE-040715-1]
61. txndc17 ENSDARG00000058079 3533 1.474 - - - - - 0.737 0.737 - - thioredoxin domain containing 17 [Source:ZFIN;Acc:ZDB-GENE-040801-193]
62. pnisr ENSDARG00000069855, ENSDARG00000116449 3465 1.47 - - - 0.709 - - 0.761 - - PNN-interacting serine/arginine-rich protein [Source:ZFIN;Acc:ZDB-GENE-030131-362]
63. mthfd2_1 ENSDARG00000098646, ENSDARG00000112356, ENSDARG00000117060 2390 1.468 - - - - - 0.752 - 0.716 - methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2, methenyltetrahydrofolate cyclohydrolase [Source:ZFIN;Acc:ZDB-GENE-040704-20]
64. fibpa ENSDARG00000016058 2148 1.466 - - - - - 0.765 0.701 - - fibroblast growth factor (acidic) intracellular binding protein a [Source:ZFIN;Acc:ZDB-GENE-040426-1363]
65. ccz1 ENSDARG00000056559, ENSDARG00000109877 2629 1.465 - - - 0.734 - - - 0.731 - CCZ1 homolog, vacuolar protein trafficking and biogenesis associated [Source:ZFIN;Acc:ZDB-GENE-040426-698]
66. metap1 ENSDARG00000033440, ENSDARG00000110334 6569 1.465 - - - - - 0.757 0.708 - - methionyl aminopeptidase 1 [Source:ZFIN;Acc:ZDB-GENE-050626-124]
67. adh5 ENSDARG00000080010, ENSDARG00000111574 4980 1.454 - - - - - 0.727 0.727 - - alcohol dehydrogenase 5 [Source:ZFIN;Acc:ZDB-GENE-011003-1]
68. srpr 5148 1.453 - - - - - 0.737 0.716 - - signal recognition particle receptor (docking protein)
69. hnrpkl ENSDARG00000007034 4660 1.446 - - - - - 0.708 - - 0.738 heterogeneous nuclear ribonucleoprotein K, like [Source:ZFIN;Acc:ZDB-GENE-040426-1923]
70. suco ENSDARG00000016532 1609 1.444 - - - 0.708 - - - 0.736 - SUN domain containing ossification factor [Source:ZFIN;Acc:ZDB-GENE-030131-2941]
71. ip6k2 ip6k2 3926 1.441 - - - - - - - 0.727 0.714
72. cpsf6 ENSDARG00000018618 3923 1.44 0.705 - - - - - 0.735 - - cleavage and polyadenylation specific factor 6 [Source:ZFIN;Acc:ZDB-GENE-030131-5277]
73. CU570791.5 CU570791.5 872 1.439 - - - 0.703 - 0.736 - - -
74. plcg1 ENSDARG00000038442 5324 1.429 0.722 - - - - 0.707 - - - phospholipase C, gamma 1 [Source:ZFIN;Acc:ZDB-GENE-030421-3]
75. xpnpep1 ENSDARG00000029011 1723 1.428 - - - - - 0.712 0.716 - - X-prolyl aminopeptidase (aminopeptidase P) 1, soluble [Source:ZFIN;Acc:ZDB-GENE-040426-999]
76. prpf8 ENSDARG00000026180 7026 1.426 0.720 - - 0.706 - - - - - pre-mRNA processing factor 8 [Source:ZFIN;Acc:ZDB-GENE-030131-577]
77. mtdha ENSDARG00000014159, ENSDARG00000115030 9903 1.413 - - - - - 0.711 0.702 - - metadherin a [Source:ZFIN;Acc:ZDB-GENE-030616-615]
78. znf395a ENSDARG00000060113 3874 1.407 - - - - - 0.702 0.705 - - zinc finger protein 395a [Source:ZFIN;Acc:ZDB-GENE-061215-52]
79. pebp1 ENSDARG00000042069 6651 0.998 - - 0.998 - - - - - - phosphatidylethanolamine binding protein 1 [Source:ZFIN;Acc:ZDB-GENE-040426-2621]
80. CWC15 ENSDARG00000013382 8969 0.998 - - 0.998 - - - - - - CWC15 spliceosome-associated protein homolog (S. cerevisiae) [Source:ZFIN;Acc:ZDB-GENE-040625-10]
81. kidins220a ENSDARG00000031240 3639 0.998 - - 0.998 - - - - - - kinase D-interacting substrate 220a [Source:ZFIN;Acc:ZDB-GENE-041014-170]
82. ube2kb ENSDARG00000013505, ENSDARG00000114039 3968 0.998 - - 0.998 - - - - - - ubiquitin-conjugating enzyme E2Kb (UBC1 homolog, yeast) [Source:ZFIN;Acc:ZDB-GENE-980605-9]
83. snx7 ENSDARG00000105185 2977 0.998 - - 0.998 - - - - - - sorting nexin 7 [Source:ZFIN;Acc:ZDB-GENE-040704-77]
84. zcchc8 ENSDARG00000034982 3406 0.998 - - 0.998 - - - - - - zinc finger, CCHC domain containing 8 [Source:ZFIN;Acc:ZDB-GENE-060526-6]
85. ptgr1 ENSDARG00000024877, ENSDARG00000115676 4312 0.998 - - 0.998 - - - - - - prostaglandin reductase 1 [Source:ZFIN;Acc:ZDB-GENE-041212-80]
86. fam192a ENSDARG00000041631 4113 0.998 - - 0.998 - - - - - - family with sequence similarity 192, member A [Source:ZFIN;Acc:ZDB-GENE-030131-6692]
87. vat1 ENSDARG00000056481, ENSDARG00000111382 7389 0.998 - - 0.998 - - - - - - vesicle amine transport 1 [Source:ZFIN;Acc:ZDB-GENE-030616-178]
88. arglu1a ENSDARG00000019223 8716 0.997 - - 0.997 - - - - - - arginine and glutamate rich 1a [Source:ZFIN;Acc:ZDB-GENE-040426-2914]
89. zgc:110239 ENSDARG00000077664 7015 0.997 - - 0.997 - - - - - - zgc:110239 [Source:ZFIN;Acc:ZDB-GENE-050417-107]
90. glula ENSDARG00000099776 14156 0.997 - - 0.997 - - - - - - glutamate-ammonia ligase (glutamine synthase) a [Source:ZFIN;Acc:ZDB-GENE-030131-688]
91. tceb1b 14935 0.996 - - 0.996 - - - - - - transcription elongation factor B (SIII), polypeptide 1b
92. spata13 ENSDARG00000062837 5330 0.996 - - 0.996 - - - - - - spermatogenesis associated 13 [Source:ZFIN;Acc:ZDB-GENE-091116-25]
93. unc45b ENSDARG00000008433 8298 0.996 - - 0.996 - - - - - - unc-45 myosin chaperone B [Source:ZFIN;Acc:ZDB-GENE-020919-3]
94. gpm6aa ENSDARG00000055455, ENSDARG00000110942 9156 0.995 - - 0.995 - - - - - - glycoprotein M6Aa [Source:ZFIN;Acc:ZDB-GENE-030710-7]
95. atp6v0ca ENSDARG00000057853 23277 0.993 - - 0.993 - - - - - - ATPase H+ transporting V0 subunit ca [Source:ZFIN;Acc:ZDB-GENE-020419-23]
96. rab10 ENSDARG00000046106 15618 0.993 - - 0.993 - - - - - - RAB10, member RAS oncogene family [Source:ZFIN;Acc:ZDB-GENE-040718-304]
97. cux1a ENSDARG00000078459 3914 0.993 - 0.993 - - - - - - - cut-like homeobox 1a [Source:ZFIN;Acc:ZDB-GENE-030131-5868]
98. nsa2 ENSDARG00000007708 6329 0.99 - 0.990 - - - - - - - NSA2 ribosome biogenesis homolog (S. cerevisiae) [Source:ZFIN;Acc:ZDB-GENE-030131-488]
99. angptl2b ENSDARG00000068369 1705 0.989 - 0.989 - - - - - - - angiopoietin-like 2b [Source:ZFIN;Acc:ZDB-GENE-050624-1]
100. snx12 ENSDARG00000019060 9563 0.987 - 0.987 - - - - - - - sorting nexin 12 [Source:ZFIN;Acc:ZDB-GENE-040426-787]

There are 1073 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA