Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Results for usp28

Gene Name Gene ID Reads Annotation
usp28 ENSDARG00000008880 1850 ubiquitin specific peptidase 28 [Source:ZFIN;Acc:ZDB-GENE-041008-142]










Genes with expression patterns similar to usp28

Nr. Gene Name Gene ID Reads Σ scores 28hpf trunk1 28hpf trunk2 28hpf whole1 28hpf whole2 28hpf whole3 PA 40hpf trunk1 40hpf trunk2 40hpf whole embryo1 40hpf whole embryo2 Annotation
1. usp28 ENSDARG00000008880 1850 9 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 ubiquitin specific peptidase 28 [Source:ZFIN;Acc:ZDB-GENE-041008-142]
2. ldb3a ENSDARG00000056322, ENSDARG00000116388 2569 4.615 0.779 0.750 0.745 - 0.709 - 0.919 0.713 - LIM domain binding 3a [Source:ZFIN;Acc:ZDB-GENE-040121-6]
3. casq1b ENSDARG00000018105 2643 4.188 0.813 0.733 0.731 - - 0.987 0.924 - - calsequestrin 1b [Source:ZFIN;Acc:ZDB-GENE-060929-1070]
4. AIMP1 ENSDARG00000060036 4136 3.959 0.769 0.915 0.767 0.768 0.740 - - - - aminoacyl tRNA synthetase complex-interacting multifunctional protein 1 [Source:ZFIN;Acc:ZDB-GENE-060825-144]
5. FHOD3_1 FHOD3_1 983 3.938 0.822 0.826 0.726 - - - 0.847 0.717 -
6. obsl1b ENSDARG00000077388 2511 3.905 0.736 0.866 - 0.705 - - 0.880 0.718 - obscurin-like 1b [Source:ZFIN;Acc:ZDB-GENE-050809-29]
7. chrnd ENSDARG00000019342 2728 3.591 0.761 0.902 - - - 0.995 0.933 - - cholinergic receptor, nicotinic, delta (muscle) [Source:ZFIN;Acc:ZDB-GENE-030131-6665]
8. BX324201.1 BX324201.1 3302 3.424 0.812 - - - - 0.958 0.914 0.740 -
9. myhc4 ENSDARG00000035438 1322 3.401 0.917 0.868 - 0.704 - - 0.912 - - myosin heavy chain 4 [Source:ZFIN;Acc:ZDB-GENE-030131-6206]
10. PTPLA PTPLA 4044 3.388 0.797 0.945 0.749 - - - 0.897 - -
11. myod1 ENSDARG00000030110 6019 3.327 0.817 0.849 - - - - 0.926 - 0.735 myogenic differentiation 1 [Source:ZFIN;Acc:ZDB-GENE-980526-561]
12. mybpc2b ENSDARG00000021265 9618 3.326 0.855 0.870 - - - - 0.884 0.717 - myosin binding protein C, fast type b [Source:ZFIN;Acc:ZDB-GENE-050320-80]
13. smtnl1 ENSDARG00000041257 7410 3.271 0.883 - - 0.729 - - 0.945 - 0.714 smoothelin-like 1 [Source:ZFIN;Acc:ZDB-GENE-050306-23]
14. MYOT ENSDARG00000076312 1791 3.25 0.779 0.831 0.718 - - - 0.922 - - myotilin [Source:ZFIN;Acc:ZDB-GENE-110411-129]
15. cacna2d1a ENSDARG00000014804 1924 3.21 0.771 0.795 - - - - 0.929 0.715 - calcium channel, voltage-dependent, alpha 2/delta subunit 1a [Source:ZFIN;Acc:ZDB-GENE-041210-215]
16. cfl2 ENSDARG00000014106 8051 3.184 0.765 0.888 - 0.707 - - 0.824 - - cofilin 2 (muscle) [Source:ZFIN;Acc:ZDB-GENE-040426-1815]
17. tpma ENSDARG00000033683 752432 3.16 0.872 - 0.749 - - - 0.802 0.737 - alpha-tropomyosin [Source:ZFIN;Acc:ZDB-GENE-990415-269]
18. tgm1l1 ENSDARG00000102106 1437 3.128 0.730 0.889 0.715 - - - 0.794 - - transglutaminase 1 like 1 [Source:ZFIN;Acc:ZDB-GENE-060503-139]
19. matn3b ENSDARG00000069265 856 3.111 0.748 0.814 - - - - 0.820 0.729 - matrilin 3b [Source:ZFIN;Acc:ZDB-GENE-050221-9]
20. vcl vcl 6667 3.095 0.811 0.844 - 0.721 0.719 - - - -
21. actn2 actn2 1054 3.061 0.766 0.842 0.741 - - - 0.712 - -
22. ryr1b ENSDARG00000023797 5693 2.802 - 0.918 - - - 0.929 0.955 - - ryanodine receptor 1b (skeletal) [Source:ZFIN;Acc:ZDB-GENE-070705-417]
23. hhatla ENSDARG00000039051 6598 2.739 0.879 0.947 - - - - 0.913 - - hedgehog acyltransferase like, a [Source:ZFIN;Acc:ZDB-GENE-040426-1865]
24. usp5_1 ENSDARG00000014517, ENSDARG00000114598 5050 2.708 0.878 0.935 - - - - 0.895 - - ubiquitin specific peptidase 5 (isopeptidase T) [Source:ZFIN;Acc:ZDB-GENE-040426-2584]
25. srl ENSDARG00000104587 11126 2.699 0.860 0.902 - - - - 0.937 - - sarcalumenin [Source:ZFIN;Acc:ZDB-GENE-061110-91]
26. pygma ENSDARG00000055518 15972 2.692 0.867 0.922 - - - - 0.903 - - phosphorylase, glycogen, muscle A [Source:ZFIN;Acc:ZDB-GENE-050522-482]
27. sh3bgr ENSDARG00000021633 3498 2.675 0.838 0.918 - - - - 0.919 - - SH3 domain binding glutamate-rich protein [Source:ZFIN;Acc:ZDB-GENE-040801-27]
28. trdn ENSDARG00000041779 4283 2.662 0.870 0.867 - - - - 0.925 - - triadin [Source:ZFIN;Acc:ZDB-GENE-041014-193]
29. DNAJA4 ENSDARG00000051762 5657 2.659 - 0.862 - - - - 0.941 0.856 - DnaJ heat shock protein family (Hsp40) member A4 [Source:HGNC Symbol;Acc:HGNC:14885]
30. stac3 ENSDARG00000098883 1765 2.655 0.839 0.904 - - - - 0.912 - - SH3 and cysteine rich domain 3 [Source:ZFIN;Acc:ZDB-GENE-040801-248]
31. ryr3 ENSDARG00000071331 6795 2.653 0.818 0.887 - - - - 0.948 - - ryanodine receptor 3 [Source:ZFIN;Acc:ZDB-GENE-041001-165]
32. txlnbb ENSDARG00000076241 6396 2.651 0.873 0.913 - - - - 0.865 - - taxilin beta b [Source:ZFIN;Acc:ZDB-GENE-070424-77]
33. pbxip1a ENSDARG00000071015 4960 2.647 0.801 0.918 - - - - 0.928 - - pre-B-cell leukemia homeobox interacting protein 1a [Source:ZFIN;Acc:ZDB-GENE-060503-871]
34. sptb ENSDARG00000030490 7128 2.646 0.812 0.882 - - - - 0.952 - - spectrin, beta, erythrocytic [Source:ZFIN;Acc:ZDB-GENE-000906-1]
35. C13H10orf71 3489 2.637 0.833 0.881 - - - - 0.923 - - chromosome 13 C10orf71 homolog
36. znf106a ENSDARG00000016651 6049 2.636 0.866 0.830 - - - - 0.940 - - zinc finger protein 106a [Source:ZFIN;Acc:ZDB-GENE-040718-21]
37. atp1a2a ENSDARG00000010472, ENSDARG00000111818, ENSDARG00000115733 6341 2.631 0.780 0.902 - - - - 0.949 - - ATPase Na+/K+ transporting subunit alpha 2 [Source:ZFIN;Acc:ZDB-GENE-001212-6]
38. hapln1a ENSDARG00000089769 12334 2.626 0.885 0.847 - - - - 0.894 - - hyaluronan and proteoglycan link protein 1a [Source:ZFIN;Acc:ZDB-GENE-050302-175]
39. serpinf1 ENSDARG00000069048 2083 2.619 - 0.760 - - - 0.988 0.871 - - serpin peptidase inhibitor, clade F (alpha-2 antiplasmin, pigment epithelium derived factor), member 1 [Source:ZFIN;Acc:ZDB-GENE-040912-2]
40. pcmt ENSDARG00000015201 5132 2.611 - 0.777 - - - 0.972 0.862 - - protein-L-isoaspartate (D-aspartate) O-methyltransferase [Source:ZFIN;Acc:ZDB-GENE-990415-134]
41. akap6 ENSDARG00000077295 1382 2.611 0.844 0.844 - - - - 0.923 - - A kinase (PRKA) anchor protein 6 [Source:ZFIN;Acc:ZDB-GENE-120207-2]
42. BX294434.1 ENSDARG00000061272 6493 2.609 0.797 0.862 - - - - 0.950 - - solute carrier family 41 member 1 [Source:NCBI gene;Acc:564564]
43. TMPO TMPO 3264 2.608 0.838 0.830 - - - - 0.940 - -
44. CR354540.2 ENSDARG00000117517 18452 2.607 0.892 - - - 0.759 - 0.956 - -
45. ntmt1 ENSDARG00000022399 5779 2.606 0.818 0.888 - - - - 0.900 - - N-terminal Xaa-Pro-Lys N-methyltransferase 1 [Source:ZFIN;Acc:ZDB-GENE-040426-2055]
46. si:ch211-114n24.7 si:ch211-114n24.7 2544 2.603 0.839 0.879 - - - - 0.885 - -
47. cacng1 cacng1 3118 2.603 0.837 0.883 - - - - 0.883 - -
48. lamb2 ENSDARG00000002084 3265 2.601 0.743 0.874 - - - 0.984 - - - laminin, beta 2 (laminin S) [Source:ZFIN;Acc:ZDB-GENE-081030-4]
49. srpk3 ENSDARG00000005916 1546 2.6 0.839 0.878 - - - - 0.883 - - SRSF protein kinase 3 [Source:ZFIN;Acc:ZDB-GENE-101025-2]
50. EHBP1L1 EHBP1L1 2500 2.589 0.821 0.816 - - - - 0.952 - -
51. nexn ENSDARG00000057317 10972 2.589 0.900 - - 0.754 - - 0.935 - - nexilin (F actin binding protein) [Source:ZFIN;Acc:ZDB-GENE-041114-92]
52. prx ENSDARG00000017246 6183 2.588 0.835 0.802 - - - - 0.951 - - periaxin [Source:ZFIN;Acc:ZDB-GENE-030131-5790]
53. rtn2a ENSDARG00000016088 12184 2.575 0.892 - - - - - 0.942 0.741 - reticulon 2a [Source:ZFIN;Acc:ZDB-GENE-060420-1]
54. xirp2a ENSDARG00000071113 7113 2.573 0.860 0.798 - - - - 0.915 - - xin actin binding repeat containing 2a [Source:ZFIN;Acc:ZDB-GENE-040108-7]
55. mdh1b ENSDARG00000018008 3196 2.573 0.816 - - - 0.818 - 0.939 - - malate dehydrogenase 1B, NAD (soluble) [Source:ZFIN;Acc:ZDB-GENE-060929-384]
56. mybphb ENSDARG00000003081 5208 2.571 - 0.901 - - 0.762 - 0.908 - - myosin binding protein Hb [Source:ZFIN;Acc:ZDB-GENE-030131-9794]
57. myhz2 ENSDARG00000012944 69921 2.569 0.898 - - 0.738 - - 0.933 - - myosin, heavy polypeptide 2, fast muscle specific [Source:ZFIN;Acc:ZDB-GENE-020604-1]
58. alpk3a ENSDARG00000078989 1992 2.568 0.804 0.863 - - - - 0.901 - - alpha-kinase 3a [Source:ZFIN;Acc:ZDB-GENE-050419-48]
59. CR847973.1 ENSDARG00000115516 8754 2.559 0.804 0.837 - - - - 0.918 - -
60. BX530018.3 ENSDARG00000107022 614 2.559 0.834 0.838 - - - - 0.887 - -
61. chrna1 ENSDARG00000009021 2931 2.557 0.816 0.852 - - - - 0.889 - - cholinergic receptor, nicotinic, alpha 1 (muscle) [Source:ZFIN;Acc:ZDB-GENE-980526-137]
62. tnc ENSDARG00000021948, ENSDARG00000113518 12162 2.556 0.868 0.884 - - - - 0.804 - - tenascin C [Source:ZFIN;Acc:ZDB-GENE-980526-104]
63. rp42-pen rp42-pen 3395 2.552 - 0.911 - 0.750 - - 0.891 - -
64. hspg2 ENSDARG00000076564 3440 2.551 0.802 0.847 - - - - 0.902 - - heparan sulfate proteoglycan 2 [Source:ZFIN;Acc:ZDB-GENE-080807-4]
65. NRAP ENSDARG00000009341 3565 2.551 0.819 0.844 - - - - 0.888 - - nebulin-related anchoring protein [Source:ZFIN;Acc:ZDB-GENE-060616-224]
66. znf648 ENSDARG00000104823 1918 2.539 0.884 0.866 - - - - 0.789 - - zinc finger protein 648 [Source:ZFIN;Acc:ZDB-GENE-120215-149]
67. gypc ENSDARG00000041546 1487 2.538 0.845 0.858 - - - - 0.835 - - glycophorin C (Gerbich blood group) [Source:ZFIN;Acc:ZDB-GENE-030131-7930]
68. zgc:92518 ENSDARG00000016343 3837 2.538 0.835 - - 0.775 - - 0.928 - - zgc:92518 [Source:ZFIN;Acc:ZDB-GENE-040718-53]
69. COL22A1 COL22A1 4473 2.536 0.788 0.808 - - - - 0.940 - -
70. pvalb4 ENSDARG00000024433 35736 2.529 0.894 - - - 0.717 - 0.918 - - parvalbumin 4 [Source:ZFIN;Acc:ZDB-GENE-040625-48]
71. TRIM63 TRIM63 1600 2.526 0.801 0.815 - - - - 0.910 - -
72. atp1b3b ENSDARG00000042837 5163 2.526 0.888 - - - 0.732 - 0.906 - - ATPase Na+/K+ transporting subunit beta 3b [Source:ZFIN;Acc:ZDB-GENE-001127-1]
73. tgm2a ENSDARG00000070157 4516 2.517 0.880 - 0.708 - - - 0.929 - - transglutaminase 2, C polypeptide A [Source:ZFIN;Acc:ZDB-GENE-040912-78]
74. trim55a ENSDARG00000029596 2858 2.515 0.776 0.902 - - - - 0.837 - - tripartite motif containing 55a [Source:ZFIN;Acc:ZDB-GENE-040718-50]
75. tnnt2d ENSDARG00000002988 7590 2.513 0.832 0.757 - - - - 0.924 - - troponin T2d, cardiac [Source:ZFIN;Acc:ZDB-GENE-050626-97]
76. rai14 ENSDARG00000039974, ENSDARG00000111103 916 2.513 0.772 0.891 - - - - 0.850 - - retinoic acid induced 14 [Source:ZFIN;Acc:ZDB-GENE-040718-235]
77. eno1a ENSDARG00000022456, ENSDARG00000116458 14401 2.508 0.815 - 0.763 - - - 0.930 - - enolase 1a, (alpha) [Source:ZFIN;Acc:ZDB-GENE-030131-6048]
78. MUSTN1 MUSTN1 1882 2.507 0.793 0.826 - - - - 0.888 - -
79. rps6kb1b ENSDARG00000058230, ENSDARG00000115202 2565 2.504 - 0.771 - - - 0.992 0.741 - - ribosomal protein S6 kinase b, polypeptide 1b [Source:ZFIN;Acc:ZDB-GENE-040426-2038]
80. limch1a ENSDARG00000074275 2981 2.501 0.789 0.817 - - - - 0.895 - - LIM and calponin homology domains 1a [Source:ZFIN;Acc:ZDB-GENE-090312-153]
81. CU633479.5 ENSDARG00000114818 1815 2.499 0.801 0.776 - - - - 0.922 - -
82. smyd2b ENSDARG00000005629 8181 2.497 0.853 0.884 0.760 - - - - - - SET and MYND domain containing 2b [Source:ZFIN;Acc:ZDB-GENE-041001-201]
83. mef2cb ENSDARG00000009418 1124 2.494 0.729 0.877 - - - - 0.888 - - myocyte enhancer factor 2cb [Source:ZFIN;Acc:ZDB-GENE-040901-7]
84. DUSP27 ENSDARG00000099889 1197 2.49 0.796 0.894 - - - - 0.800 - - dual specificity phosphatase 27 [Source:ZFIN;Acc:ZDB-GENE-140513-1]
85. zgc:153662 zgc:153662 4604 2.488 0.844 0.760 - - - - 0.884 - -
86. myoz2b ENSDARG00000037266 2139 2.488 0.723 0.849 - - - - 0.916 - - myozenin 2b [Source:ZFIN;Acc:ZDB-GENE-040426-1853]
87. txn2 ENSDARG00000034777 4071 2.487 - 0.711 - - - 0.982 0.794 - - thioredoxin 2 [Source:ZFIN;Acc:ZDB-GENE-040426-1795]
88. ITGB1BP2 ENSDARG00000030176 2472 2.485 0.829 0.802 - - - - 0.854 - - integrin subunit beta 1 binding protein 2 [Source:HGNC Symbol;Acc:HGNC:6154]
89. CABZ01086825.1 CABZ01086825.1 573 2.483 0.756 0.795 - - - - 0.932 - -
90. CR392006.1 CR392006.1 1401 2.48 0.710 0.920 - - - - 0.850 - -
91. plod2 ENSDARG00000011821 1656 2.475 0.754 0.837 - - - - 0.884 - - procollagen-lysine, 2-oxoglutarate 5-dioxygenase 2 [Source:ZFIN;Acc:ZDB-GENE-070326-1]
92. palm1a ENSDARG00000026882, ENSDARG00000115356 3425 2.474 0.729 0.939 - - - - 0.806 - - paralemmin 1a [Source:ZFIN;Acc:ZDB-GENE-050417-409]
93. klhl40a ENSDARG00000039052 2537 2.474 0.804 0.789 - - - - 0.881 - - kelch-like family member 40a [Source:ZFIN;Acc:ZDB-GENE-050916-1]
94. actn3b ENSDARG00000001431 15747 2.473 0.898 0.847 0.728 - - - - - - actinin alpha 3b [Source:ZFIN;Acc:ZDB-GENE-030131-2040]
95. adss ENSDARG00000002071 5497 2.459 0.789 - - 0.713 - - 0.957 - - adenylosuccinate synthase [Source:ZFIN;Acc:ZDB-GENE-050417-337]
96. fitm1 ENSDARG00000056464 1759 2.456 0.773 0.782 - - - - 0.901 - - fat storage-inducing transmembrane protein 1 [Source:ZFIN;Acc:ZDB-GENE-050306-28]
97. tns1 tns1 5891 2.443 0.818 0.792 - - - - 0.833 - -
98. cap2 ENSDARG00000104478 3266 2.442 0.803 0.729 - - - - 0.910 - - CAP, adenylate cyclase-associated protein, 2 (yeast) [Source:ZFIN;Acc:ZDB-GENE-040426-1758]
99. eya1 ENSDARG00000014259, ENSDARG00000116267 5111 2.442 0.802 0.822 - - - - 0.818 - - EYA transcriptional coactivator and phosphatase 1 [Source:ZFIN;Acc:ZDB-GENE-990712-18]
100. cmya5 ENSDARG00000061379 1423 2.441 0.775 0.774 - - - - 0.892 - - cardiomyopathy associated 5 [Source:ZFIN;Acc:ZDB-GENE-070630-1]

There are 1553 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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