Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Results for upf3b

Gene Name Gene ID Reads Annotation
upf3b ENSDARG00000000489, ENSDARG00000116719 2088 UPF3B, regulator of nonsense mediated mRNA decay [Source:ZFIN;Acc:ZDB-GENE-040426-1630]










Genes with expression patterns similar to upf3b

Nr. Gene Name Gene ID Reads Σ scores 28hpf trunk1 28hpf trunk2 28hpf whole1 28hpf whole2 28hpf whole3 PA 40hpf trunk1 40hpf trunk2 40hpf whole embryo1 40hpf whole embryo2 Annotation
1. upf3b ENSDARG00000000489, ENSDARG00000116719 2088 9 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 UPF3B, regulator of nonsense mediated mRNA decay [Source:ZFIN;Acc:ZDB-GENE-040426-1630]
2. sort1b ENSDARG00000056252 2652 2.861 0.987 0.988 0.886 - - - - - - sortilin 1b [Source:ZFIN;Acc:ZDB-GENE-030131-7447]
3. dhx15 ENSDARG00000015392 7496 1.976 0.986 0.990 - - - - - - - DEAH (Asp-Glu-Ala-His) box helicase 15 [Source:ZFIN;Acc:ZDB-GENE-030131-650]
4. cldnc ENSDARG00000015955 3196 1.9 0.915 0.985 - - - - - - - claudin c [Source:ZFIN;Acc:ZDB-GENE-010328-3]
5. rspo2 ENSDARG00000079570, ENSDARG00000113124 1688 1.887 0.982 - 0.905 - - - - - - R-spondin 2 [Source:ZFIN;Acc:ZDB-GENE-060503-667]
6. alg5 ENSDARG00000021938, ENSDARG00000061235 2279 1.867 - 0.982 0.885 - - - - - - asparagine-linked glycosylation 5 (dolichyl-phosphate beta-glucosyltransferase) [Source:ZFIN;Acc:ZDB-GENE-030131-6586]
7. ivns1abpa ENSDARG00000031100 3806 1.846 - 0.990 0.856 - - - - - - influenza virus NS1A binding protein a [Source:ZFIN;Acc:ZDB-GENE-031222-2]
8. srsf3b ENSDARG00000059360 14888 1.845 0.968 0.877 - - - - - - - serine/arginine-rich splicing factor 3b [Source:ZFIN;Acc:ZDB-GENE-071005-2]
9. suclg1 ENSDARG00000052712 17570 1.842 0.872 0.970 - - - - - - - succinate-CoA ligase, alpha subunit [Source:ZFIN;Acc:ZDB-GENE-040912-101]
10. snx12 ENSDARG00000019060 9563 1.829 - 0.986 0.843 - - - - - - sorting nexin 12 [Source:ZFIN;Acc:ZDB-GENE-040426-787]
11. tm9sf2 ENSDARG00000003866, ENSDARG00000115213 3888 1.803 0.946 - 0.857 - - - - - - transmembrane 9 superfamily member 2 [Source:ZFIN;Acc:ZDB-GENE-030131-6302]
12. ndufa1 ENSDARG00000036329, ENSDARG00000111888 18361 1.796 0.882 0.914 - - - - - - - NADH:ubiquinone oxidoreductase subunit A1 [Source:ZFIN;Acc:ZDB-GENE-040625-168]
13. crk ENSDARG00000055635, ENSDARG00000109497, ENSDARG00000115801 5105 1.796 - 0.997 - - - - 0.799 - - v-crk avian sarcoma virus CT10 oncogene homolog [Source:ZFIN;Acc:ZDB-GENE-040801-148]
14. sik2b ENSDARG00000062315 1303 1.792 0.992 - - - - - 0.800 - - salt-inducible kinase 2b [Source:ZFIN;Acc:ZDB-GENE-071012-1]
15. uqcrc2a ENSDARG00000014794 3949 1.781 0.990 - - - - - 0.791 - - ubiquinol-cytochrome c reductase core protein 2a [Source:ZFIN;Acc:ZDB-GENE-040718-405]
16. rab14 ENSDARG00000074246 4084 1.763 0.997 - - - - - 0.766 - - RAB14, member RAS oncogene family [Source:ZFIN;Acc:ZDB-GENE-030826-20]
17. zgc:110339 ENSDARG00000046030 8180 1.758 0.859 0.899 - - - - - - - zgc:110339 [Source:ZFIN;Acc:ZDB-GENE-050417-323]
18. BRK1 ENSDARG00000041974 6430 1.735 0.946 - 0.789 - - - - - - BRICK1, SCAR/WAVE actin-nucleating complex subunit [Source:ZFIN;Acc:ZDB-GENE-040625-77]
19. hars ENSDARG00000003693 7217 1.724 - 0.962 - - - 0.762 - - - histidyl-tRNA synthetase [Source:ZFIN;Acc:ZDB-GENE-040912-152]
20. pgam5 ENSDARG00000035608 4044 1.722 - 0.999 - 0.723 - - - - - PGAM family member 5, serine/threonine protein phosphatase, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-030131-683]
21. ewsr1a ENSDARG00000020258, ENSDARG00000113252 11221 1.72 - 0.976 0.744 - - - - - - EWS RNA-binding protein 1a [Source:ZFIN;Acc:ZDB-GENE-030131-2317]
22. LIG1 ENSDARG00000060041, ENSDARG00000110159, ENSDARG00000113788 8110 1.706 - 0.996 - - - - 0.710 - - ligase I, DNA, ATP-dependent [Source:ZFIN;Acc:ZDB-GENE-110404-2]
23. hist2h2l ENSDARG00000068996, ENSDARG00000112150 10411 1.669 - - 0.927 - - 0.742 - - - histone 2, H2, like [Source:ZFIN;Acc:ZDB-GENE-031118-36]
24. arglu1a ENSDARG00000019223 8716 1.668 0.875 - - - - - 0.793 - - arginine and glutamate rich 1a [Source:ZFIN;Acc:ZDB-GENE-040426-2914]
25. hspe1 ENSDARG00000056167 21636 1.66 0.957 0.703 - - - - - - - heat shock 10 protein 1 [Source:ZFIN;Acc:ZDB-GENE-000906-2]
26. h2afva ENSDARG00000068820 16427 1.66 0.945 - - - - - 0.715 - - H2A histone family, member Va [Source:ZFIN;Acc:ZDB-GENE-020717-1]
27. exoc6 ENSDARG00000020521 1533 1.645 - - 0.893 - - - 0.752 - - exocyst complex component 6 [Source:ZFIN;Acc:ZDB-GENE-040426-2511]
28. tbl3 ENSDARG00000052344 1530 1.635 - - 0.893 - - - 0.742 - - transducin (beta)-like 3 [Source:ZFIN;Acc:ZDB-GENE-041114-104]
29. ppib ENSDARG00000092798 21969 1.632 0.816 - 0.816 - - - - - - peptidylprolyl isomerase B (cyclophilin B) [Source:ZFIN;Acc:ZDB-GENE-040426-1955]
30. egln2 ENSDARG00000062562 2500 1.624 - - 0.900 - - 0.724 - - - egl-9 family hypoxia-inducible factor 2 [Source:ZFIN;Acc:ZDB-GENE-060503-757]
31. adnp2b ENSDARG00000028431 4683 1.624 - - 0.894 - - - 0.730 - - ADNP homeobox 2b [Source:ZFIN;Acc:ZDB-GENE-030131-5930]
32. C10H11orf30 C10H11orf30 1982 1.621 - - 0.890 - - - 0.731 - -
33. eif2s2 ENSDARG00000053047 15904 1.618 0.879 - - - - 0.739 - - - eukaryotic translation initiation factor 2, subunit 2 beta [Source:ZFIN;Acc:ZDB-GENE-030131-3085]
34. CPEB4 CPEB4 3249 1.614 - - 0.860 - - - 0.754 - -
35. luc7l ENSDARG00000055903 3357 1.606 - - 0.831 - - - 0.775 - - LUC7-like (S. cerevisiae) [Source:ZFIN;Acc:ZDB-GENE-040625-111]
36. ahi1 ENSDARG00000044056 951 1.605 - - 0.897 - - 0.708 - - - Abelson helper integration site 1 [Source:ZFIN;Acc:ZDB-GENE-060803-1]
37. hnrnpd ENSDARG00000059246, ENSDARG00000109297, ENSDARG00000113453 3440 1.598 - - 0.880 - - - 0.718 - - heterogeneous nuclear ribonucleoprotein D [Source:ZFIN;Acc:ZDB-GENE-070424-97]
38. ube4b ENSDARG00000037017 8012 1.597 - - 0.891 0.706 - - - - - ubiquitination factor E4B, UFD2 homolog (S. cerevisiae) [Source:ZFIN;Acc:ZDB-GENE-020205-1]
39. naa10 ENSDARG00000071060, ENSDARG00000111093, ENSDARG00000116173 4657 1.593 - - 0.851 - - - - 0.742 - N(alpha)-acetyltransferase 10, NatA catalytic subunit [Source:ZFIN;Acc:ZDB-GENE-040426-2648]
40. oaz1b ENSDARG00000104782 37623 1.572 0.719 - 0.853 - - - - - - ornithine decarboxylase antizyme 1b [Source:ZFIN;Acc:ZDB-GENE-020731-5]
41. hnrnpr ENSDARG00000014569 3423 1.549 - - 0.845 - - - 0.704 - - heterogeneous nuclear ribonucleoprotein R [Source:ZFIN;Acc:ZDB-GENE-040426-2766]
42. alcama ENSDARG00000026531, ENSDARG00000116648 6938 1.549 - - 0.834 - - - 0.715 - - activated leukocyte cell adhesion molecule a [Source:ZFIN;Acc:ZDB-GENE-990415-30]
43. zswim5 ENSDARG00000055900 4243 1.548 - - 0.778 - - - 0.770 - - zinc finger, SWIM-type containing 5 [Source:ZFIN;Acc:ZDB-GENE-030925-30]
44. ttk ENSDARG00000041361 3911 1.543 - - 0.794 - - - 0.749 - - ttk protein kinase [Source:ZFIN;Acc:ZDB-GENE-030123-1]
45. rbm25 rbm25 3629 1.54 - - 0.815 - - - 0.725 - -
46. eif4h ENSDARG00000042252 6742 1.515 - - 0.721 - - - 0.794 - - eukaryotic translation initiation factor 4h [Source:ZFIN;Acc:ZDB-GENE-010328-19]
47. sdc4 ENSDARG00000059906 10105 1.494 - - 0.784 - - - 0.710 - - syndecan 4 [Source:ZFIN;Acc:ZDB-GENE-061111-1]
48. lypla2 ENSDARG00000053656 8971 1.483 - - 0.731 - - - 0.752 - - lysophospholipase II [Source:ZFIN;Acc:ZDB-GENE-040426-1715]
49. sash1a ENSDARG00000007179 2497 1.473 - - - - - 0.764 0.709 - - SAM and SH3 domain containing 1a [Source:ZFIN;Acc:ZDB-GENE-030131-9960]
50. psmb1 ENSDARG00000009640 8628 1.467 - 0.740 0.727 - - - - - - proteasome subunit beta 1 [Source:ZFIN;Acc:ZDB-GENE-040618-2]
51. SERBP1 SERBP1 9276 1.439 - - 0.701 - - - 0.738 - -
52. sh3bp4a ENSDARG00000020000 1049 0.999 - 0.999 - - - - - - - SH3-domain binding protein 4a [Source:ZFIN;Acc:ZDB-GENE-040303-3]
53. dnajc3 dnajc3 802 0.999 - 0.999 - - - - - - -
54. dda1 ENSDARG00000076074, ENSDARG00000109308 1993 0.999 - 0.999 - - - - - - - DET1 and DDB1 associated 1 [Source:ZFIN;Acc:ZDB-GENE-040426-2137]
55. CR387996.1 ENSDARG00000097774 3037 0.999 - 0.999 - - - - - - -
56. cep44 ENSDARG00000053106 683 0.999 - 0.999 - - - - - - - centrosomal protein 44 [Source:ZFIN;Acc:ZDB-GENE-060929-392]
57. tuba1c ENSDARG00000055216 8384 0.999 - 0.999 - - - - - - - tubulin, alpha 1c [Source:ZFIN;Acc:ZDB-GENE-061114-1]
58. dazap1 ENSDARG00000070846, ENSDARG00000114578 525 0.999 - 0.999 - - - - - - - DAZ associated protein 1 [Source:ZFIN;Acc:ZDB-GENE-070212-1]
59. cxcl12b ENSDARG00000055100, ENSDARG00000113088 4476 0.999 - 0.999 - - - - - - - chemokine (C-X-C motif) ligand 12b (stromal cell-derived factor 1) [Source:ZFIN;Acc:ZDB-GENE-030721-1]
60. tdh ENSDARG00000002745 5344 0.999 - 0.999 - - - - - - - L-threonine dehydrogenase [Source:ZFIN;Acc:ZDB-GENE-040426-2379]
61. tmem209 ENSDARG00000039340 1598 0.999 - 0.999 - - - - - - - transmembrane protein 209 [Source:ZFIN;Acc:ZDB-GENE-030131-2879]
62. samd1a ENSDARG00000102810 1037 0.999 - 0.999 - - - - - - - sterile alpha motif domain containing 1a [Source:ZFIN;Acc:ZDB-GENE-061013-517]
63. git2b ENSDARG00000042791, ENSDARG00000111846 1332 0.999 - 0.999 - - - - - - - G protein-coupled receptor kinase interacting ArfGAP 2b [Source:ZFIN;Acc:ZDB-GENE-070112-2192]
64. mcfd2 ENSDARG00000039757, ENSDARG00000109631, ENSDARG00000116502 1804 0.999 - 0.999 - - - - - - - multiple coagulation factor deficiency 2 [Source:ZFIN;Acc:ZDB-GENE-041010-8]
65. foxo1b ENSDARG00000061549 790 0.999 - 0.999 - - - - - - - forkhead box O1 b [Source:ZFIN;Acc:ZDB-GENE-080425-3]
66. abl1 ENSDARG00000035187 3553 0.999 - 0.999 - - - - - - - c-abl oncogene 1, non-receptor tyrosine kinase [Source:ZFIN;Acc:ZDB-GENE-100812-9]
67. utp23 ENSDARG00000105012 1346 0.999 - 0.999 - - - - - - - UTP23, small subunit (SSU) processome component, homolog (yeast) [Source:ZFIN;Acc:ZDB-GENE-050417-353]
68. sdad1 ENSDARG00000105117 2819 0.999 - 0.999 - - - - - - - SDA1 domain containing 1 [Source:ZFIN;Acc:ZDB-GENE-021213-1]
69. socs6b ENSDARG00000015863 1799 0.999 - 0.999 - - - - - - - suppressor of cytokine signaling 6b [Source:ZFIN;Acc:ZDB-GENE-030131-1670]
70. arnt2 ENSDARG00000103697 5731 0.999 - 0.999 - - - - - - - aryl-hydrocarbon receptor nuclear translocator 2 [Source:ZFIN;Acc:ZDB-GENE-001207-3]
71. rpl3 ENSDARG00000003599 797 0.999 - 0.999 - - - - - - - ribosomal protein L3 [Source:ZFIN;Acc:ZDB-GENE-030131-1291]
72. mrpl13 ENSDARG00000056903 2768 0.999 - 0.999 - - - - - - - mitochondrial ribosomal protein L13 [Source:ZFIN;Acc:ZDB-GENE-050522-167]
73. nr5a2 ENSDARG00000100940 1488 0.999 - 0.999 - - - - - - - nuclear receptor subfamily 5, group A, member 2 [Source:ZFIN;Acc:ZDB-GENE-990415-79]
74. ror2 ENSDARG00000076227, ENSDARG00000116710 1498 0.999 - 0.999 - - - - - - - receptor tyrosine kinase-like orphan receptor 2 [Source:ZFIN;Acc:ZDB-GENE-060427-5]
75. akirin1 ENSDARG00000039969, ENSDARG00000116670 2533 0.999 - 0.999 - - - - - - - akirin 1 [Source:ZFIN;Acc:ZDB-GENE-040426-2178]
76. cped1 ENSDARG00000045747 1024 0.999 - 0.999 - - - - - - - cadherin-like and PC-esterase domain containing 1 [Source:ZFIN;Acc:ZDB-GENE-041210-247]
77. PLEKHG4 ENSDARG00000075964 2860 0.999 - 0.999 - - - - - - - pleckstrin homology domain containing, family G (with RhoGef domain) member 4 [Source:ZFIN;Acc:ZDB-GENE-030131-4824]
78. pdxkb ENSDARG00000036546 721 0.998 - 0.998 - - - - - - - pyridoxal (pyridoxine, vitamin B6) kinase b [Source:ZFIN;Acc:ZDB-GENE-030616-521]
79. CR381676.2 CR381676.2 1591 0.998 - 0.998 - - - - - - -
80. ppp1cab ENSDARG00000071566 4350 0.998 - 0.998 - - - - - - - protein phosphatase 1, catalytic subunit, alpha isozyme b [Source:ZFIN;Acc:ZDB-GENE-030131-5512]
81. FP102892.2 FP102892.2 809 0.998 - 0.998 - - - - - - -
82. KLB ENSDARG00000076294 595 0.998 - 0.998 - - - - - - - klotho beta [Source:ZFIN;Acc:ZDB-GENE-110909-4]
83. slc38a10 ENSDARG00000077081 1691 0.998 - 0.998 - - - - - - - solute carrier family 38, member 10 [Source:ZFIN;Acc:ZDB-GENE-050309-21]
84. LIMA1 LIMA1 908 0.998 - 0.998 - - - - - - -
85. myh10 ENSDARG00000000103 7522 0.998 - 0.998 - - - - - - - myosin, heavy chain 10, non-muscle [Source:ZFIN;Acc:ZDB-GENE-030616-162]
86. mao ENSDARG00000023712 1448 0.998 - 0.998 - - - - - - - monoamine oxidase [Source:ZFIN;Acc:ZDB-GENE-040329-3]
87. ing2 ENSDARG00000104907 1336 0.998 - 0.998 - - - - - - - inhibitor of growth family, member 2 [Source:ZFIN;Acc:ZDB-GENE-040718-147]
88. sgut1 3470 0.998 - 0.998 - - - - - - - SGT1 homolog, MIS12 kinetochore complex assembly cochaperone, transcript variant X1
89. FAM210B ENSDARG00000052638 1755 0.997 0.997 - - - - - - - - family with sequence similarity 210, member B [Source:ZFIN;Acc:ZDB-GENE-050913-122]
90. mycla ENSDARG00000006003 1866 0.997 0.997 - - - - - - - - MYCL proto-oncogene, bHLH transcription factor a [Source:ZFIN;Acc:ZDB-GENE-040426-2439]
91. CDIP1 ENSDARG00000076118 1294 0.997 0.997 - - - - - - - - cell death-inducing p53 target 1 [Source:ZFIN;Acc:ZDB-GENE-070720-18]
92. rad50 ENSDARG00000038917 1105 0.997 0.997 - - - - - - - - RAD50 homolog, double strand break repair protein [Source:ZFIN;Acc:ZDB-GENE-050506-110]
93. dnttip2 ENSDARG00000057648 2381 0.997 0.997 - - - - - - - - deoxynucleotidyltransferase, terminal, interacting protein 2 [Source:ZFIN;Acc:ZDB-GENE-080513-5]
94. ZNF385C ENSDARG00000058154 478 0.997 0.997 - - - - - - - - zinc finger protein 385C [Source:ZFIN;Acc:ZDB-GENE-091112-1]
95. lum ENSDARG00000045580 5395 0.997 - 0.997 - - - - - - - lumican [Source:ZFIN;Acc:ZDB-GENE-040625-24]
96. C20H12orf57 C20H12orf57 3325 0.997 - 0.997 - - - - - - -
97. dync1li1 ENSDARG00000098317 729 0.997 0.997 - - - - - - - - dynein, cytoplasmic 1, light intermediate chain 1 [Source:ZFIN;Acc:ZDB-GENE-030131-4108]
98. gtf2a1 ENSDARG00000011000 2026 0.997 0.997 - - - - - - - - general transcription factor IIA, 1 [Source:ZFIN;Acc:ZDB-GENE-030131-2694]
99. adkb ENSDARG00000095947 990 0.997 0.997 - - - - - - - - adenosine kinase b [Source:ZFIN;Acc:ZDB-GENE-030131-948]
100. cx35.4 ENSDARG00000042866 685 0.997 0.997 - - - - - - - - connexin 35.4 [Source:ZFIN;Acc:ZDB-GENE-050417-174]

There are 779 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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