Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

Zebrafish data search


search
Exact
Search
Limit to:

{{libname.name}} 

Results for smurf1

Gene Name Gene ID Reads Annotation
smurf1 ENSDARG00000016086 878 SMAD specific E3 ubiquitin protein ligase 1 [Source:ZFIN;Acc:ZDB-GENE-040426-2744]










Genes with expression patterns similar to smurf1

Nr. Gene Name Gene ID Reads Σ scores 28hpf trunk1 28hpf trunk2 28hpf whole1 28hpf whole2 28hpf whole3 PA 40hpf trunk1 40hpf trunk2 40hpf whole embryo1 40hpf whole embryo2 Annotation
1. smurf1 ENSDARG00000016086 878 9 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 SMAD specific E3 ubiquitin protein ligase 1 [Source:ZFIN;Acc:ZDB-GENE-040426-2744]
2. pan3 ENSDARG00000031637, ENSDARG00000111004 613 1.983 - - - - 0.990 - 0.993 - - poly(A) specific ribonuclease subunit PAN3 [Source:ZFIN;Acc:ZDB-GENE-070928-13]
3. atl3 ENSDARG00000004270 2806 1.943 - - - - 0.972 - 0.971 - - atlastin 3 [Source:ZFIN;Acc:ZDB-GENE-041010-109]
4. dopey1 438 1.922 - - - - 0.996 - - - 0.926 dopey family member 1, transcript variant X4
5. dhdds ENSDARG00000039851 1135 1.909 - - - - - - 0.992 - 0.917 dehydrodolichyl diphosphate synthase [Source:ZFIN;Acc:ZDB-GENE-040426-2236]
6. aldh16a1 ENSDARG00000037935 617 1.901 - - - - 0.990 - - - 0.911 aldehyde dehydrogenase 16 family, member A1 [Source:ZFIN;Acc:ZDB-GENE-070112-2062]
7. ttc1 ENSDARG00000044567 1141 1.881 - - - - - - 0.990 - 0.891 tetratricopeptide repeat domain 1 [Source:ZFIN;Acc:ZDB-GENE-041114-80]
8. TAF2 ENSDARG00000102307 1401 1.878 - - - - - - 0.967 - 0.911 TAF2 RNA polymerase II, TATA box binding protein (TBP)-associated factor [Source:ZFIN;Acc:ZDB-GENE-030131-3207]
9. ifrd1 ENSDARG00000068708 2858 1.862 - - - - - - 0.956 - 0.906 interferon-related developmental regulator 1 [Source:ZFIN;Acc:ZDB-GENE-030131-6132]
10. gde1 ENSDARG00000055108, ENSDARG00000110855 1261 1.859 - - - - - - 0.947 - 0.912 glycerophosphodiester phosphodiesterase 1 [Source:ZFIN;Acc:ZDB-GENE-040426-881]
11. tom1l2 ENSDARG00000009217, ENSDARG00000111492 1639 1.858 - - - - 0.983 - - - 0.875 target of myb1 like 2 membrane trafficking protein [Source:ZFIN;Acc:ZDB-GENE-061013-3]
12. ik ENSDARG00000004161 3132 1.857 - - - - - - 0.976 - 0.881 IK cytokine [Source:ZFIN;Acc:ZDB-GENE-030131-960]
13. rad51 ENSDARG00000041411, ENSDARG00000111948 1056 1.856 - - - - - - 0.985 - 0.871 RAD51 recombinase [Source:ZFIN;Acc:ZDB-GENE-040426-2286]
14. si:ch211-150o23.2 ENSDARG00000092746 788 1.844 - - - - 0.990 - - 0.854 - si:ch211-150o23.2 [Source:ZFIN;Acc:ZDB-GENE-060503-386]
15. cables2a ENSDARG00000076964 1330 1.838 - - - - 0.986 - - - 0.852 Cdk5 and Abl enzyme substrate 2a [Source:ZFIN;Acc:ZDB-GENE-091118-58]
16. pes ENSDARG00000018902 3286 1.838 - - - - - - 0.988 - 0.850 pescadillo [Source:ZFIN;Acc:ZDB-GENE-990415-206]
17. paxip1 ENSDARG00000005606 1417 1.834 - - - - 0.976 - - - 0.858 PAX interacting (with transcription-activation domain) protein 1 [Source:ZFIN;Acc:ZDB-GENE-041010-214]
18. si:dkeyp-120h9.1 ENSDARG00000020278 3120 1.822 - - - - 0.932 - 0.890 - - si:dkeyp-120h9.1 [Source:ZFIN;Acc:ZDB-GENE-070705-534]
19. dvl3a ENSDARG00000015707 1132 1.802 - - - - 0.990 - - - 0.812 dishevelled segment polarity protein 3a [Source:ZFIN;Acc:ZDB-GENE-010319-1]
20. DLC1 ENSDARG00000079317 2149 1.798 - - - - 0.963 - - - 0.835 DLC1 Rho GTPase activating protein [Source:ZFIN;Acc:ZDB-GENE-130206-12]
21. cpsf1 ENSDARG00000034178 2036 1.797 - - - - - - 0.978 - 0.819 cleavage and polyadenylation specific factor 1 [Source:ZFIN;Acc:ZDB-GENE-040709-2]
22. mmp16a 1128 1.791 - - - - - - 0.942 - 0.849 matrix metallopeptidase 16a (membrane-inserted)
23. WDR44 ENSDARG00000060249, ENSDARG00000114185, ENSDARG00000114247, ENSDARG00000117103 2545 1.789 - - - - 0.967 - - - 0.822 WD repeat domain 44 [Source:NCBI gene;Acc:569045]
24. gstal gstal 1865 1.784 - - - - - - 0.941 - 0.843
25. mcts1 ENSDARG00000025972 4662 1.78 - - - - 0.951 - - - 0.829 malignant T cell amplified sequence 1 [Source:ZFIN;Acc:ZDB-GENE-040426-957]
26. igf2bp3 ENSDARG00000010266 5789 1.771 - - - - 0.895 - 0.876 - - insulin-like growth factor 2 mRNA binding protein 3 [Source:ZFIN;Acc:ZDB-GENE-000308-1]
27. hsd11b3a hsd11b3a 1388 1.754 - - 0.801 - - - 0.953 - -
28. PTS ENSDARG00000045269 2185 1.745 - 0.755 - - - - 0.990 - - 6-pyruvoyltetrahydropterin synthase [Source:ZFIN;Acc:ZDB-GENE-070615-3]
29. ndufa6 ENSDARG00000038028 2653 1.73 - - - - - - 0.913 - 0.817 NADH:ubiquinone oxidoreductase subunit A6 [Source:ZFIN;Acc:ZDB-GENE-040426-1124]
30. loxl2b ENSDARG00000044074 1919 1.725 - - - - 0.983 0.742 - - - lysyl oxidase-like 2b [Source:ZFIN;Acc:ZDB-GENE-050208-29]
31. phf21ab ENSDARG00000021378 1706 1.721 - - - - 0.731 - 0.990 - - PHD finger protein 21Ab [Source:ZFIN;Acc:ZDB-GENE-030131-6456]
32. ctdspl2b ENSDARG00000060586 1682 1.713 - 0.733 - - 0.980 - - - - CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase like 2b [Source:ZFIN;Acc:ZDB-GENE-030131-1809]
33. plekhh1 ENSDARG00000053835 2123 1.711 - 0.719 - - - - 0.992 - - pleckstrin homology domain containing, family H (with MyTH4 domain) member 1 [Source:ZFIN;Acc:ZDB-GENE-061219-1]
34. tomm22 ENSDARG00000045146, ENSDARG00000109761 3545 1.708 - - - - 0.948 - - - 0.760 translocase of outer mitochondrial membrane 22 homolog (yeast) [Source:ZFIN;Acc:ZDB-GENE-030131-9810]
35. nup107 ENSDARG00000016010 1043 1.703 - 0.721 - - - - 0.982 - - nucleoporin 107 [Source:ZFIN;Acc:ZDB-GENE-041210-245]
36. TRAPPC10 ENSDARG00000098118 954 1.701 0.710 - - - 0.991 - - - - trafficking protein particle complex 10 [Source:ZFIN;Acc:ZDB-GENE-131115-1]
37. qser1 ENSDARG00000074750 597 1.687 - - - - - 0.776 - - 0.911 glutamine and serine rich 1 [Source:ZFIN;Acc:ZDB-GENE-030131-2978]
38. ube4b ENSDARG00000037017 8012 1.682 - - - - 0.876 0.806 - - - ubiquitination factor E4B, UFD2 homolog (S. cerevisiae) [Source:ZFIN;Acc:ZDB-GENE-020205-1]
39. nckap1 ENSDARG00000060853 3540 1.679 - - - - 0.965 - - - 0.714 NCK-associated protein 1 [Source:ZFIN;Acc:ZDB-GENE-030131-4426]
40. RAMP1 RAMP1 736 1.677 - 0.705 - - - - 0.972 - -
41. gatad2ab ENSDARG00000006192 2461 1.66 - - - - 0.951 - - - 0.709 GATA zinc finger domain containing 2Ab [Source:ZFIN;Acc:ZDB-GENE-040426-2372]
42. wu:fc51f04 wu:fc51f04 7074 1.645 - - - - 0.867 - 0.778 - -
43. anapc11 ENSDARG00000102531, ENSDARG00000116987 1769 1.636 - - - - - 0.726 - - 0.910 APC11 anaphase promoting complex subunit 11 homolog (yeast) [Source:ZFIN;Acc:ZDB-GENE-061013-383]
44. ostf1 ENSDARG00000091555, ENSDARG00000114550 582 1.63 0.741 - - - - - - - 0.889 osteoclast stimulating factor 1 [Source:ZFIN;Acc:ZDB-GENE-040625-157]
45. itm2ba ENSDARG00000007098 5686 1.615 - - - - 0.871 - - - 0.744 integral membrane protein 2Ba [Source:ZFIN;Acc:ZDB-GENE-030131-2352]
46. larp1 ENSDARG00000101722 976 1.613 - - - - - 0.701 - - 0.912 La ribonucleoprotein domain family, member 1 [Source:ZFIN;Acc:ZDB-GENE-030131-5386]
47. mars ENSDARG00000034396 3618 1.609 - - - - 0.849 - - - 0.760 methionyl-tRNA synthetase [Source:ZFIN;Acc:ZDB-GENE-030219-83]
48. sdad1 ENSDARG00000105117 2819 1.582 - - - - - 0.718 - - 0.864 SDA1 domain containing 1 [Source:ZFIN;Acc:ZDB-GENE-021213-1]
49. fam193b ENSDARG00000102831 442 0.996 - - - - 0.996 - - - - family with sequence similarity 193, member B [Source:ZFIN;Acc:ZDB-GENE-111102-1]
50. pfkpb ENSDARG00000012801 223 0.996 - - - - 0.996 - - - - phosphofructokinase, platelet b [Source:ZFIN;Acc:ZDB-GENE-070912-634]
51. slc2a15b ENSDARG00000053269 899 0.996 - - - - 0.996 - - - - solute carrier family 2 (facilitated glucose transporter), member 15b [Source:ZFIN;Acc:ZDB-GENE-050508-1]
52. lrch2 ENSDARG00000075580, ENSDARG00000116418 255 0.996 - - - - 0.996 - - - - leucine-rich repeats and calponin homology (CH) domain containing 2 [Source:ZFIN;Acc:ZDB-GENE-080114-1]
53. ccdc28b ENSDARG00000011222 528 0.996 - - - - 0.996 - - - - coiled-coil domain containing 28B [Source:ZFIN;Acc:ZDB-GENE-060208-3]
54. ccr10 ENSDARG00000040643 255 0.996 - - - - 0.996 - - - - chemokine (C-C motif) receptor 10 [Source:ZFIN;Acc:ZDB-GENE-040718-424]
55. dennd5b ENSDARG00000003789 1152 0.996 - - - - - - 0.996 - - DENN/MADD domain containing 5B [Source:ZFIN;Acc:ZDB-GENE-030131-2248]
56. nefma ENSDARG00000021351 790 0.996 - - - - 0.996 - - - - neurofilament, medium polypeptide a [Source:ZFIN;Acc:ZDB-GENE-050522-205]
57. lig4 ENSDARG00000060620 369 0.996 - - - - 0.996 - - - - ligase IV, DNA, ATP-dependent [Source:ZFIN;Acc:ZDB-GENE-070820-10]
58. gorab ENSDARG00000042031 483 0.996 - - - - 0.996 - - - - golgin, rab6-interacting [Source:ZFIN;Acc:ZDB-GENE-040426-1384]
59. FOXL2 239 0.996 - - - - 0.996 - - - - forkhead box L2, transcript variant X1
60. zgc:66014 817 0.995 - - - - - - 0.995 - - zgc:66014, transcript variant X6
61. ercc6 ENSDARG00000075612 1175 0.995 - - - - 0.995 - - - - excision repair cross-complementation group 6 [Source:ZFIN;Acc:ZDB-GENE-070228-1]
62. atxn7l3 ENSDARG00000029331 531 0.995 - - - - 0.995 - - - - ataxin 7-like 3 [Source:ZFIN;Acc:ZDB-GENE-030616-253]
63. bloc1s3 ENSDARG00000068828 502 0.995 - - - - 0.995 - - - - biogenesis of lysosomal organelles complex-1, subunit 3 [Source:ZFIN;Acc:ZDB-GENE-050913-10]
64. BX005008.2 BX005008.2 708 0.995 - - - - 0.995 - - - -
65. mpdu1b ENSDARG00000040265 1968 0.995 - - - - - - 0.995 - - mannose-P-dolichol utilization defect 1b [Source:ZFIN;Acc:ZDB-GENE-040625-135]
66. cuedc2 ENSDARG00000039365 484 0.995 - - - - 0.995 - - - - CUE domain containing 2 [Source:ZFIN;Acc:ZDB-GENE-030131-6283]
67. myl2b ENSDARG00000053424 226 0.995 - - - - 0.995 - - - - myosin, light chain 2b, regulatory, cardiac, slow [Source:ZFIN;Acc:ZDB-GENE-060331-137]
68. lgi1a ENSDARG00000020493 1218 0.995 - - - - 0.995 - - - - leucine-rich, glioma inactivated 1a [Source:ZFIN;Acc:ZDB-GENE-030131-1731]
69. rras2 ENSDARG00000036252, ENSDARG00000111642 1714 0.995 - - - - - - 0.995 - - RAS related 2 [Source:ZFIN;Acc:ZDB-GENE-050417-352]
70. larp7 ENSDARG00000017315 1194 0.995 - - - - 0.995 - - - - La ribonucleoprotein domain family, member 7 [Source:ZFIN;Acc:ZDB-GENE-030131-6896]
71. pvalb6 ENSDARG00000009311, ENSDARG00000113947 248 0.994 - - - - 0.994 - - - - parvalbumin 6 [Source:ZFIN;Acc:ZDB-GENE-040912-95]
72. si:ch211-198d23.1 ENSDARG00000092574 104 0.994 - - - - - - 0.994 - - si:ch211-198d23.1 [Source:ZFIN;Acc:ZDB-GENE-081104-163]
73. kbtbd7 ENSDARG00000078001 367 0.994 - - - - - - 0.994 - - kelch repeat and BTB (POZ) domain containing 7 [Source:ZFIN;Acc:ZDB-GENE-070912-204]
74. bin2b ENSDARG00000010255 2649 0.994 - - - - - - 0.994 - - bridging integrator 2b [Source:ZFIN;Acc:ZDB-GENE-030131-5598]
75. ago4 ENSDARG00000100854 496 0.994 - - - - 0.994 - - - - argonaute RISC catalytic component 4 [Source:ZFIN;Acc:ZDB-GENE-030131-5357]
76. irf8 ENSDARG00000056407 85 0.994 - - - - - - 0.994 - - interferon regulatory factor 8 [Source:ZFIN;Acc:ZDB-GENE-040718-367]
77. spag7 ENSDARG00000011555 3224 0.994 - - - - 0.994 - - - - sperm associated antigen 7 [Source:ZFIN;Acc:ZDB-GENE-040426-1632]
78. med13b ENSDARG00000003910 1143 0.994 - - - - 0.994 - - - - mediator complex subunit 13b [Source:ZFIN;Acc:ZDB-GENE-030131-3529]
79. zgc:162612 ENSDARG00000079699 244 0.994 - - - - - - 0.994 - - zgc:162612 [Source:ZFIN;Acc:ZDB-GENE-070410-88]
80. PDZD8 ENSDARG00000088699 844 0.994 - - - - - - 0.994 - - PDZ domain containing 8 [Source:ZFIN;Acc:ZDB-GENE-110310-2]
81. aspg ENSDARG00000052942 1406 0.994 - - - - 0.994 - - - - asparaginase homolog (S. cerevisiae) [Source:ZFIN;Acc:ZDB-GENE-070820-14]
82. exoc3l4 ENSDARG00000058180 923 0.994 - - - - 0.994 - - - - exocyst complex component 3-like 4 [Source:ZFIN;Acc:ZDB-GENE-081028-71]
83. timm10b ENSDARG00000043898 1233 0.994 - - - - - - 0.994 - - translocase of inner mitochondrial membrane 10 homolog B (yeast) [Source:ZFIN;Acc:ZDB-GENE-050417-370]
84. zswim8 ENSDARG00000069397, ENSDARG00000112914 2378 0.993 - - - - 0.993 - - - - zinc finger, SWIM-type containing 8 [Source:ZFIN;Acc:ZDB-GENE-050320-59]
85. msxe msxe 362 0.993 - - - - 0.993 - - - -
86. socs3a ENSDARG00000025428 349 0.993 - - - - - - 0.993 - - suppressor of cytokine signaling 3a [Source:ZFIN;Acc:ZDB-GENE-030131-7349]
87. SLITRK6 ENSDARG00000098769 217 0.993 - - - - - - 0.993 - - SLIT and NTRK-like family, member 6 [Source:ZFIN;Acc:ZDB-GENE-030131-2816]
88. COL13A1 1565 0.993 - - - - - - 0.993 - - collagen, type XIII, alpha 1, transcript variant X1
89. prkaa1 ENSDARG00000060596 1448 0.993 - - - - - - 0.993 - - protein kinase, AMP-activated, alpha 1 catalytic subunit [Source:ZFIN;Acc:ZDB-GENE-030325-1]
90. tab1 ENSDARG00000036613 445 0.993 - - - - 0.993 - - - - TGF-beta activated kinase 1/MAP3K7 binding protein 1 [Source:ZFIN;Acc:ZDB-GENE-060628-1]
91. mob2b ENSDARG00000012005 395 0.993 - - - - - - 0.993 - - MOB kinase activator 2b [Source:ZFIN;Acc:ZDB-GENE-060616-319]
92. clu ENSDARG00000010434 498 0.993 - - - - 0.993 - - - - clusterin [Source:ZFIN;Acc:ZDB-GENE-040426-1774]
93. TUSC5_1 TUSC5_1 320 0.993 - - - - 0.993 - - - -
94. gnsb ENSDARG00000098296 1075 0.993 - - - - - - 0.993 - - glucosamine (N-acetyl)-6-sulfatase (Sanfilippo disease IIID), b [Source:ZFIN;Acc:ZDB-GENE-030131-5846]
95. usp43a ENSDARG00000103494, ENSDARG00000111546, ENSDARG00000112146 211 0.993 - - - - - - 0.993 - - ubiquitin specific peptidase 43a [Source:ZFIN;Acc:ZDB-GENE-100211-1]
96. wdr24 ENSDARG00000025507 505 0.993 - - - - 0.993 - - - - WD repeat domain 24 [Source:ZFIN;Acc:ZDB-GENE-040426-2012]
97. prdm16 prdm16 1346 0.993 - - - - 0.993 - - - -
98. unk ENSDARG00000000935 353 0.993 - - - - - - 0.993 - - unkempt family zinc finger [Source:ZFIN;Acc:ZDB-GENE-040426-707]
99. sult3st1 ENSDARG00000009885 218 0.993 - - - - - - 0.993 - - sulfotransferase family 3, cytosolic sulfotransferase 1 [Source:ZFIN;Acc:ZDB-GENE-061207-52]
100. si:ch211-51o18.2 si:ch211-51o18.2 111 0.993 - - - - - - 0.993 - -

There are 1296 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA