Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

Zebrafish data search


search
Exact
Search
Limit to:

{{libname.name}} 

Results for shisa3

Gene Name Gene ID Reads Annotation
shisa3 ENSDARG00000075467 485 shisa family member 3 [Source:ZFIN;Acc:ZDB-GENE-070112-2022]










Genes with expression patterns similar to shisa3

Nr. Gene Name Gene ID Reads Σ scores 28hpf trunk1 28hpf trunk2 28hpf whole1 28hpf whole2 28hpf whole3 PA 40hpf trunk1 40hpf trunk2 40hpf whole embryo1 40hpf whole embryo2 Annotation
1. shisa3 ENSDARG00000075467 485 9 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 shisa family member 3 [Source:ZFIN;Acc:ZDB-GENE-070112-2022]
2. tph1b ENSDARG00000036082, ENSDARG00000112888 79 1.887 0.901 0.986 - - - - - - - tryptophan hydroxylase 1b [Source:ZFIN;Acc:ZDB-GENE-030805-6]
3. hs3st1l2 ENSDARG00000035578 279 1.861 0.864 0.997 - - - - - - - heparan sulfate (glucosamine) 3-O-sulfotransferase 1-like 2 [Source:ZFIN;Acc:ZDB-GENE-070202-3]
4. reep3l reep3l 608 1.835 0.836 - - - 0.999 - - - -
5. PKP3 PKP3 391 1.814 - 0.951 - - - - 0.863 - -
6. ypel3 ENSDARG00000055510 1344 1.763 - 0.765 - - 0.998 - - - - yippee-like 3 [Source:ZFIN;Acc:ZDB-GENE-030516-4]
7. ccdc19 ccdc19 495 1.763 - - - - 0.998 0.765 - - -
8. fibinb ENSDARG00000087196, ENSDARG00000110737 53 1.749 - 0.996 - - - - 0.753 - - fin bud initiation factor b [Source:ZFIN;Acc:ZDB-GENE-050417-423]
9. nhp2l1b nhp2l1b 3898 1.713 - - - - 0.947 - - 0.766 -
10. AMPD2 AMPD2 1723 1.703 0.707 - - - 0.996 - - - -
11. dock9b ENSDARG00000016311 122 1.696 0.890 0.806 - - - - - - - dedicator of cytokinesis 9b [Source:ZFIN;Acc:ZDB-GENE-090916-2]
12. fech ENSDARG00000003462 212 1.686 0.769 - - - - 0.917 - - - ferrochelatase [Source:ZFIN;Acc:ZDB-GENE-000928-1]
13. zgc:171759_2 ENSDARG00000100259, ENSDARG00000109737, ENSDARG00000111964, ENSDARG00000114195, ENSDARG00000115938 48 1.685 0.917 0.768 - - - - - - - zgc:171759 [Source:ZFIN;Acc:ZDB-GENE-071004-32]
14. nmt1b ENSDARG00000057206 654 1.628 0.766 - - - - 0.862 - - - N-myristoyltransferase 1b [Source:ZFIN;Acc:ZDB-GENE-081222-3]
15. BX890577.1 BX890577.1 257 1.601 - 0.732 - - - 0.869 - - -
16. erg ENSDARG00000077304 161 1.582 - - - - - 0.771 0.811 - - v-ets avian erythroblastosis virus E26 oncogene homolog [Source:ZFIN;Acc:ZDB-GENE-041212-40]
17. CABZ01024201.1 CABZ01024201.1 30 1.57 - 0.827 - - - - 0.743 - -
18. USP31 ENSDARG00000074017 628 1.562 0.718 0.844 - - - - - - - ubiquitin specific peptidase 31 [Source:ZFIN;Acc:ZDB-GENE-100210-4]
19. FP017194.1 FP017194.1 52 1.554 - 0.731 - - - - 0.823 - -
20. BX511034.2 ENSDARG00000071636 31 1.544 - - 0.731 - - - 0.813 - - novel protein similar to vertebrate amiloride-sensitive cation channel 2 neuronal (ACCN2) [Source:NCBI gene;Acc:100151078]
21. si:dkey-241l7.10 si:dkey-241l7.10 38 1.542 0.718 - - - - 0.824 - - -
22. elk3 ENSDARG00000018688, ENSDARG00000110853 1108 1.539 0.812 - - - - 0.727 - - - ELK3, ETS-domain protein [Source:ZFIN;Acc:ZDB-GENE-030716-2]
23. tm4sf4 ENSDARG00000040747 65 1.531 0.800 - - - - 0.731 - - - transmembrane 4 L six family member 4 [Source:ZFIN;Acc:ZDB-GENE-040801-231]
24. BX470211.1 ENSDARG00000105629 111 1.525 0.779 0.746 - - - - - - -
25. ncl ENSDARG00000002710 16951 1.5 - - - - 0.793 - - 0.707 - nucleolin [Source:ZFIN;Acc:ZDB-GENE-030131-6986]
26. ACKR3 ACKR3 235 1.499 0.730 - - - - - 0.769 - -
27. insm1b ENSDARG00000053301 2032 1.486 - 0.783 - 0.703 - - - - - insulinoma-associated 1b [Source:ZFIN;Acc:ZDB-GENE-030131-2602]
28. foxg1a ENSDARG00000070769 928 1.481 - - - 0.739 - 0.742 - - - forkhead box G1a [Source:ZFIN;Acc:ZDB-GENE-990415-267]
29. foxf2b ENSDARG00000070389 67 1.481 - - 0.744 - - 0.737 - - - forkhead box F2b [Source:ZFIN;Acc:ZDB-GENE-041001-130]
30. PELI3 ENSDARG00000087452, ENSDARG00000111338 166 1.479 - 0.777 - - - - 0.702 - - pellino E3 ubiquitin protein ligase family member 3 [Source:ZFIN;Acc:ZDB-GENE-110304-4]
31. fam174b ENSDARG00000068709 1171 1.437 - - - - - 0.707 0.730 - - family with sequence similarity 174, member B [Source:ZFIN;Acc:ZDB-GENE-050419-78]
32. DPYD DPYD 52 1.415 - - 0.700 - - - 0.715 - -
33. PLCXD1_2 PLCXD1_2 9 1 - 1.000 - - - - - - -
34. si:dkey-185p13.1 ENSDARG00000095837 12 1 - 1.000 - - - - - - - si:dkey-185p13.1 [Source:ZFIN;Acc:ZDB-GENE-110411-125]
35. slc8a1a ENSDARG00000013422 12 1 - 1.000 - - - - - - - solute carrier family 8 (sodium/calcium exchanger), member 1a [Source:ZFIN;Acc:ZDB-GENE-050809-1]
36. BX005421.4 BX005421.4 11 1 - 1.000 - - - - - - -
37. si:dkeyp-53d3.3 ENSDARG00000098664 65 1 - 1.000 - - - - - - - si:dkeyp-53d3.3 [Source:ZFIN;Acc:ZDB-GENE-050208-644]
38. AL954698.1 ENSDARG00000098202 377 1 - 1.000 - - - - - - -
39. IKZF4 ENSDARG00000037068 36 1 - 1.000 - - - - - - - IKAROS family zinc finger 4 [Source:ZFIN;Acc:ZDB-GENE-180319-1]
40. BX537137.1 ENSDARG00000092436 77 1 - 1.000 - - - - - - - gastrula zinc finger protein XlCGF7.1 [Source:NCBI gene;Acc:100148466]
41. klhl26 ENSDARG00000053876 48 1 - 1.000 - - - - - - - kelch-like family member 26 [Source:ZFIN;Acc:ZDB-GENE-030131-5975]
42. BX511061.2 BX511061.2 30 1 - 1.000 - - - - - - -
43. si:dkey-233e3.1 si:dkey-233e3.1 7 1 - 1.000 - - - - - - -
44. si:dkey-6o1.2 si:dkey-6o1.2 12 1 - 1.000 - - - - - - -
45. bik ENSDARG00000045549 18 1 - 1.000 - - - - - - - BCL2 interacting killer [Source:ZFIN;Acc:ZDB-GENE-041210-181]
46. stx11a ENSDARG00000044039 39 1 - 1.000 - - - - - - - syntaxin 11a [Source:ZFIN;Acc:ZDB-GENE-040426-2564]
47. cyp2k18 ENSDARG00000104593 27 1 - 1.000 - - - - - - - cytochrome P450, family 2, subfamily K, polypeptide 18 [Source:ZFIN;Acc:ZDB-GENE-040426-1584]
48. zgc:114123 ENSDARG00000044956 9 1 - 1.000 - - - - - - - zgc:114123 [Source:ZFIN;Acc:ZDB-GENE-050913-53]
49. arsk ENSDARG00000059714, ENSDARG00000115105 31 1 - 1.000 - - - - - - - arylsulfatase family, member K [Source:ZFIN;Acc:ZDB-GENE-060929-332]
50. ZNF70_14 ZNF70_14 19 1 - 1.000 - - - - - - -
51. si:dkey-229d11.5 ENSDARG00000094392 33 1 - 1.000 - - - - - - - si:dkey-229d11.5 [Source:ZFIN;Acc:ZDB-GENE-030131-5342]
52. RGS14 RGS14 15 1 - 1.000 - - - - - - -
53. CABZ01084613.1 CABZ01084613.1 22 1 - 1.000 - - - - - - -
54. ms4a17a.2 ENSDARG00000105674 32 1 - 1.000 - - - - - - - membrane-spanning 4-domains, subfamily A, member 17a.2 [Source:ZFIN;Acc:ZDB-GENE-070705-367]
55. BX928744.1 BX928744.1 15 1 - 1.000 - - - - - - -
56. MAPKBP1 ENSDARG00000103746 4 1 - 1.000 - - - - - - - mitogen-activated protein kinase binding protein 1 [Source:ZFIN;Acc:ZDB-GENE-120207-1]
57. cx32.3 ENSDARG00000041787 33 1 - 1.000 - - - - - - - connexin 32.3 [Source:ZFIN;Acc:ZDB-GENE-030131-1337]
58. CMA1_8 CMA1_8 10 1 - 1.000 - - - - - - -
59. si:ch211-165l15.1 si:ch211-165l15.1 10 1 - 1.000 - - - - - - -
60. lrch4 ENSDARG00000068258 24 1 - 1.000 - - - - - - - leucine-rich repeats and calponin homology (CH) domain containing 4 [Source:ZFIN;Acc:ZDB-GENE-060503-749]
61. cadm1b ENSDARG00000042677 277 1 - 1.000 - - - - - - - cell adhesion molecule 1b [Source:ZFIN;Acc:ZDB-GENE-080327-34]
62. gata4 ENSDARG00000098952 11 1 - 1.000 - - - - - - - GATA binding protein 4 [Source:ZFIN;Acc:ZDB-GENE-980526-476]
63. zgc:175008 zgc:175008 55 1 - 1.000 - - - - - - -
64. CR735107.1 CR735107.1 6 1 - 1.000 - - - - - - -
65. CR457462.1 CR457462.1 11 1 - 1.000 - - - - - - -
66. als2a ENSDARG00000075111 29 1 - 1.000 - - - - - - - amyotrophic lateral sclerosis 2a (juvenile) [Source:ZFIN;Acc:ZDB-GENE-070402-2]
67. cpn1 ENSDARG00000005185, ENSDARG00000096728 255 0.999 - - - - 0.999 - - - - carboxypeptidase N, polypeptide 1 [Source:ZFIN;Acc:ZDB-GENE-030131-9116]
68. st3gal4 ENSDARG00000041006 636 0.999 - - - - 0.999 - - - - ST3 beta-galactoside alpha-2,3-sialyltransferase 4 [Source:ZFIN;Acc:ZDB-GENE-050309-174]
69. zgc:162816 ENSDARG00000070416 974 0.999 - - - - 0.999 - - - - zgc:162816 [Source:ZFIN;Acc:ZDB-GENE-070410-94]
70. smarcal1 ENSDARG00000102265 1921 0.999 - - - - 0.999 - - - - SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a-like 1 [Source:ZFIN;Acc:ZDB-GENE-041210-303]
71. KDM5A ENSDARG00000104567 450 0.999 - - - - 0.999 - - - - lysine (K)-specific demethylase 5A [Source:ZFIN;Acc:ZDB-GENE-150114-1]
72. etnk2 ENSDARG00000070213, ENSDARG00000110347 736 0.999 - - - - 0.999 - - - - ethanolamine kinase 2 [Source:ZFIN;Acc:ZDB-GENE-050913-135]
73. mutyh 512 0.999 - - - - 0.999 - - - - mutY DNA glycosylase
74. vsx1 ENSDARG00000056292, ENSDARG00000109766 442 0.999 - - - - 0.999 - - - - visual system homeobox 1 homolog, chx10-like [Source:ZFIN;Acc:ZDB-GENE-990415-205]
75. commd3 ENSDARG00000045402 1601 0.999 - - - - 0.999 - - - - COMM domain containing 3 [Source:ZFIN;Acc:ZDB-GENE-041219-3]
76. zgc:55558 ENSDARG00000013161, ENSDARG00000111354 1687 0.998 - - - - 0.998 - - - - zgc:55558 [Source:ZFIN;Acc:ZDB-GENE-040426-740]
77. rnf11a ENSDARG00000010442 592 0.998 - - - - 0.998 - - - - ring finger protein 11a [Source:ZFIN;Acc:ZDB-GENE-040426-1277]
78. zfyve21 ENSDARG00000027887 1687 0.998 - - - - 0.998 - - - - zinc finger, FYVE domain containing 21 [Source:ZFIN;Acc:ZDB-GENE-030131-1296]
79. SI:DKEY-209E8.1 SI:DKEY-209E8.1 1143 0.998 - - - - 0.998 - - - -
80. zgc:66447 ENSDARG00000025577, ENSDARG00000111229 744 0.998 - - - - 0.998 - - - - zgc:66447 [Source:ZFIN;Acc:ZDB-GENE-030131-4748]
81. NDST1 NDST1 1584 0.998 - - - - 0.998 - - - -
82. foxi3a ENSDARG00000055926 749 0.998 - - - - 0.998 - - - - forkhead box I3a [Source:ZFIN;Acc:ZDB-GENE-031126-3]
83. rhbdd2 ENSDARG00000092463 937 0.998 - - - - 0.998 - - - - rhomboid domain containing 2 [Source:ZFIN;Acc:ZDB-GENE-091204-359]
84. zbtb33 ENSDARG00000071467, ENSDARG00000112085 1425 0.998 - - - - 0.998 - - - - zinc finger and BTB domain containing 33 [Source:ZFIN;Acc:ZDB-GENE-070412-3]
85. specc1la ENSDARG00000006719, ENSDARG00000115728 1079 0.998 - - - - 0.998 - - - - sperm antigen with calponin homology and coiled-coil domains 1-like a [Source:ZFIN;Acc:ZDB-GENE-060810-139]
86. nkain1 ENSDARG00000006859 1961 0.998 - - - - 0.998 - - - - sodium/potassium transporting ATPase interacting 1 [Source:ZFIN;Acc:ZDB-GENE-040426-1472]
87. CR954963.1 ENSDARG00000097153 1135 0.998 - - - - 0.998 - - - -
88. zgc:162967 zgc:162967 2132 0.998 - - - - 0.998 - - - -
89. pou4f1 ENSDARG00000005559 821 0.998 - - - - 0.998 - - - - POU class 4 homeobox 1 [Source:ZFIN;Acc:ZDB-GENE-000523-2]
90. azi1_1 azi1_1 1375 0.997 - - - - 0.997 - - - -
91. tmem223 ENSDARG00000069494 1528 0.997 - - - - 0.997 - - - - transmembrane protein 223 [Source:ZFIN;Acc:ZDB-GENE-040801-113]
92. KLHL13 ENSDARG00000086463, ENSDARG00000103786, ENSDARG00000115063 914 0.997 - - - - 0.997 - - - - kelch-like family member 13 [Source:ZFIN;Acc:ZDB-GENE-030131-2671]
93. appb ENSDARG00000055543, ENSDARG00000109552 4461 0.997 - - - - 0.997 - - - - amyloid beta (A4) precursor protein b [Source:ZFIN;Acc:ZDB-GENE-020220-1]
94. ABTB2 ABTB2 584 0.997 - - - - 0.997 - - - -
95. dnajb12a ENSDARG00000039363 1072 0.997 - - - - 0.997 - - - - DnaJ (Hsp40) homolog, subfamily B, member 12a [Source:ZFIN;Acc:ZDB-GENE-030131-2725]
96. zgc:113333 ENSDARG00000038242 797 0.997 - - - - 0.997 - - - - zgc:113333 [Source:ZFIN;Acc:ZDB-GENE-050320-57]
97. srpk1a ENSDARG00000073997, ENSDARG00000116973 2424 0.997 - - - - 0.997 - - - - SRSF protein kinase 1a [Source:ZFIN;Acc:ZDB-GENE-030131-2399]
98. stc2a ENSDARG00000056680, ENSDARG00000109468 1156 0.997 - - - - 0.997 - - - - stanniocalcin 2a [Source:ZFIN;Acc:ZDB-GENE-041008-14]
99. TBC1D17 ENSDARG00000005927 163 0.997 - 0.997 - - - - - - - TBC1 domain family, member 17 [Source:ZFIN;Acc:ZDB-GENE-050522-79]
100. gli2b ENSDARG00000020884 1468 0.997 - - - - 0.997 - - - - GLI family zinc finger 2b [Source:ZFIN;Acc:ZDB-GENE-050523-1]

There are 1122 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA