Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

Zebrafish data search


search
Exact
Search
Limit to:

{{libname.name}} 

Results for sf3b1

Gene Name Gene ID Reads Annotation
sf3b1 ENSDARG00000056138 5785 splicing factor 3b, subunit 1 [Source:ZFIN;Acc:ZDB-GENE-040827-3]










Genes with expression patterns similar to sf3b1

Nr. Gene Name Gene ID Reads Σ scores 28hpf trunk1 28hpf trunk2 28hpf whole1 28hpf whole2 28hpf whole3 PA 40hpf trunk1 40hpf trunk2 40hpf whole embryo1 40hpf whole embryo2 Annotation
1. sf3b1 ENSDARG00000056138 5785 9 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 splicing factor 3b, subunit 1 [Source:ZFIN;Acc:ZDB-GENE-040827-3]
2. pafah1b3 ENSDARG00000058047, ENSDARG00000105336, ENSDARG00000116495 8019 3.296 - 0.979 0.770 - - - 0.785 0.762 - platelet-activating factor acetylhydrolase, isoform Ib, gamma subunit [Source:ZFIN;Acc:ZDB-GENE-040426-1026]
3. vps29 ENSDARG00000069521 5599 2.658 - 0.968 0.975 - - - 0.715 - - vacuolar protein sorting 29 homolog (S. cerevisiae) [Source:ZFIN;Acc:ZDB-GENE-030131-8764]
4. ptprsa ENSDARG00000059738, ENSDARG00000110940 7232 2.638 - 0.970 - 0.832 - - - - 0.836 protein tyrosine phosphatase, receptor type, s, a [Source:ZFIN;Acc:ZDB-GENE-020107-3]
5. cbx5 ENSDARG00000061187 24026 2.467 - 0.926 0.770 - - - 0.771 - - chromobox homolog 5 (HP1 alpha homolog, Drosophila) [Source:ZFIN;Acc:ZDB-GENE-030131-5553]
6. stag2b ENSDARG00000053668, ENSDARG00000109728 7193 2.442 - - 0.851 - - - 0.777 - 0.814 stromal antigen 2b [Source:ZFIN;Acc:ZDB-GENE-030131-2785]
7. pias4a ENSDARG00000007081 4264 2.404 - - 0.854 - - - 0.723 - 0.827 protein inhibitor of activated STAT, 4a [Source:ZFIN;Acc:ZDB-GENE-040426-2734]
8. creb1a ENSDARG00000053586 5068 2.302 - - 0.867 - 0.704 - - - 0.731 cAMP responsive element binding protein 1a [Source:ZFIN;Acc:ZDB-GENE-040426-750]
9. smarcd1 ENSDARG00000019004 6028 2.201 - - - - 0.756 - 0.701 - 0.744 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 1 [Source:ZFIN;Acc:ZDB-GENE-030131-1835]
10. tcea1 ENSDARG00000003531 2912 2.16 - - - - - - 0.737 0.715 0.708 transcription elongation factor A (SII), 1 [Source:ZFIN;Acc:ZDB-GENE-030131-8049]
11. npm1b ENSDARG00000037675 5448 1.848 - 0.983 - - - - - - 0.865 nucleophosmin 1b [Source:ZFIN;Acc:ZDB-GENE-080723-7]
12. itgb1bp1 ENSDARG00000007169 2723 1.777 - 0.902 0.875 - - - - - - integrin beta 1 binding protein 1 [Source:ZFIN;Acc:ZDB-GENE-051113-264]
13. dido1 ENSDARG00000057940 3819 1.746 0.764 0.982 - - - - - - - death inducer-obliterator 1 [Source:ZFIN;Acc:ZDB-GENE-030131-6117]
14. cenpe ENSDARG00000063385 4428 1.738 - 0.981 - - - 0.757 - - - centromere protein E [Source:ZFIN;Acc:ZDB-GENE-060929-860]
15. hnrnpul1 ENSDARG00000040564 6550 1.729 - 0.987 - - - - - 0.742 - heterogeneous nuclear ribonucleoprotein U-like 1 [Source:ZFIN;Acc:ZDB-GENE-040426-2432]
16. prkcea ENSDARG00000003008 1118 1.708 - 0.979 - - - - 0.729 - - protein kinase C, epsilon a [Source:ZFIN;Acc:ZDB-GENE-030131-8191]
17. ube2v1 ENSDARG00000041875 5739 1.706 - 0.978 - - - - 0.728 - - ubiquitin-conjugating enzyme E2 variant 1 [Source:ZFIN;Acc:ZDB-GENE-051030-102]
18. rbm8a ENSDARG00000016516 8789 1.698 - 0.889 - - - - 0.809 - - RNA binding motif protein 8A [Source:ZFIN;Acc:ZDB-GENE-050306-51]
19. atl3 ENSDARG00000004270 2806 1.688 - 0.979 - 0.709 - - - - - atlastin 3 [Source:ZFIN;Acc:ZDB-GENE-041010-109]
20. ZNF70_11 ZNF70_11 1246 1.682 - 0.975 - - - - 0.707 - -
21. eif5b ENSDARG00000016548 3972 1.679 - 0.969 - - - - - - 0.710 eukaryotic translation initiation factor 5B [Source:ZFIN;Acc:ZDB-GENE-050208-20]
22. nanos1 ENSDARG00000109337 2494 1.676 - - 0.884 - - - - - 0.792 nanos homolog 1 [Source:ZFIN;Acc:ZDB-GENE-030131-1623]
23. lmnb2 ENSDARG00000101624 11304 1.664 - 0.908 0.756 - - - - - - lamin B2 [Source:ZFIN;Acc:ZDB-GENE-990630-13]
24. fkbp3 ENSDARG00000098059 5428 1.66 - 0.910 - - - - - 0.750 - FK506 binding protein 3 [Source:ZFIN;Acc:ZDB-GENE-030616-419]
25. PLEKHH3 ENSDARG00000070174 2117 1.658 - - 0.881 0.777 - - - - - pleckstrin homology, MyTH4 and FERM domain containing H3 [Source:HGNC Symbol;Acc:HGNC:26105]
26. hif1al ENSDARG00000100826 18627 1.657 - 0.939 - - - 0.718 - - - hypoxia inducible factor 1 subunit alpha, like [Source:ZFIN;Acc:ZDB-GENE-040426-1315]
27. ddx39ab ENSDARG00000015111 11619 1.626 - - - - - - 0.728 - 0.898 DEAD (Asp-Glu-Ala-Asp) box polypeptide 39Ab [Source:ZFIN;Acc:ZDB-GENE-040426-2902]
28. snrpd2 ENSDARG00000040440, ENSDARG00000110285 4301 1.624 - - - - - - 0.808 - 0.816 small nuclear ribonucleoprotein D2 polypeptide [Source:ZFIN;Acc:ZDB-GENE-040914-10]
29. PELP1 ENSDARG00000079313 5771 1.615 - - 0.884 - - - 0.731 - - proline, glutamate and leucine rich protein 1 [Source:ZFIN;Acc:ZDB-GENE-140106-164]
30. atf4b2 atf4b2 4734 1.598 - - - - - - 0.790 - 0.808
31. cebpg ENSDARG00000036073 3791 1.592 - - 0.873 - - 0.719 - - - CCAAT enhancer binding protein gamma [Source:ZFIN;Acc:ZDB-GENE-020111-5]
32. mapre1b ENSDARG00000002659 9119 1.585 - - 0.854 - - - - - 0.731 microtubule-associated protein, RP/EB family, member 1b [Source:ZFIN;Acc:ZDB-GENE-040426-2256]
33. ACVR1B ACVR1B 4824 1.584 - - 0.866 - - - 0.718 - -
34. TAF15 ENSDARG00000070019 5102 1.582 - - - - - - 0.825 - 0.757 TAF15 RNA polymerase II, TATA box binding protein (TBP)-associated factor [Source:ZFIN;Acc:ZDB-GENE-061215-102]
35. cdk2ap2 ENSDARG00000103145 8024 1.58 - - - - - 0.827 - - 0.753 cyclin-dependent kinase 2 associated protein 2 [Source:ZFIN;Acc:ZDB-GENE-040718-35]
36. HNRNPAB HNRNPAB 22267 1.566 - - - - - - 0.784 - 0.782
37. ap3d1 ENSDARG00000071424, ENSDARG00000114974 5373 1.564 - - 0.851 - - - 0.713 - - adaptor related protein complex 3 subunit delta 1 [Source:ZFIN;Acc:ZDB-GENE-050208-437]
38. ube2e2 ENSDARG00000034670 5918 1.559 - - 0.766 - - - 0.793 - - ubiquitin-conjugating enzyme E2E 2 [Source:ZFIN;Acc:ZDB-GENE-040801-237]
39. FP085405.1 FP085405.1 5189 1.551 - - - - 0.723 - - - 0.828
40. GID4 ENSDARG00000079482 1375 1.542 0.760 - - 0.782 - - - - - GID complex subunit 4 homolog [Source:HGNC Symbol;Acc:HGNC:28453]
41. ncoa5 ENSDARG00000016345 5765 1.542 - - 0.791 - 0.751 - - - - nuclear receptor coactivator 5 [Source:ZFIN;Acc:ZDB-GENE-040912-155]
42. mxd3 ENSDARG00000098350 3040 1.542 - - - - - - - 0.819 0.723 MAX dimerization protein 3 [Source:ZFIN;Acc:ZDB-GENE-040426-1588]
43. vps25 ENSDARG00000059079 3747 1.538 - - - - - 0.822 0.716 - - vacuolar protein sorting 25 homolog (S. cerevisiae) [Source:ZFIN;Acc:ZDB-GENE-050506-30]
44. srsf3a ENSDARG00000025397, ENSDARG00000100815 11622 1.536 0.798 - - - - - 0.738 - - serine/arginine-rich splicing factor 3a [Source:ZFIN;Acc:ZDB-GENE-030616-631]
45. Sep-15 Sep-15 5644 1.532 - 0.787 - - - - 0.745 - -
46. smc4 ENSDARG00000038882 4373 1.527 - - - - 0.759 - - - 0.768 structural maintenance of chromosomes 4 [Source:ZFIN;Acc:ZDB-GENE-020419-21]
47. hmgb3a ENSDARG00000056725 15668 1.525 - - - - 0.707 - - - 0.818 high mobility group box 3a [Source:ZFIN;Acc:ZDB-GENE-050428-1]
48. polr2a ENSDARG00000099966 5706 1.52 - - - 0.761 - - 0.759 - - polymerase (RNA) II (DNA directed) polypeptide A [Source:ZFIN;Acc:ZDB-GENE-041008-78]
49. tmem35 ENSDARG00000052567 5685 1.52 - - 0.789 - - - - - 0.731 transmembrane protein 35 [Source:ZFIN;Acc:ZDB-GENE-030815-1]
50. uba1 ENSDARG00000037559 11579 1.516 - - - - 0.756 - 0.760 - - ubiquitin-like modifier activating enzyme 1 [Source:ZFIN;Acc:ZDB-GENE-040426-2009]
51. cdca8 ENSDARG00000043137 7541 1.514 - - - - 0.734 - 0.780 - - cell division cycle associated 8 [Source:ZFIN;Acc:ZDB-GENE-041114-171]
52. srsf6b ENSDARG00000016783 9926 1.514 - - - - 0.752 - 0.762 - - serine/arginine-rich splicing factor 6b [Source:ZFIN;Acc:ZDB-GENE-041219-1]
53. nedd8 ENSDARG00000007989 3896 1.503 - - 0.777 - - - 0.726 - - neural precursor cell expressed, developmentally down-regulated 8 [Source:ZFIN;Acc:ZDB-GENE-030616-588]
54. HNRNPA2B1 HNRNPA2B1 14997 1.502 - - 0.744 - - - 0.758 - -
55. rbmx ENSDARG00000014244 3445 1.499 - - - - - - 0.762 - 0.737 RNA binding motif protein X-linked [Source:ZFIN;Acc:ZDB-GENE-030131-579]
56. tjp3 ENSDARG00000002909 1978 1.495 - - 0.778 - - 0.717 - - - tight junction protein 3 [Source:ZFIN;Acc:ZDB-GENE-030828-10]
57. tia1 ENSDARG00000052536, ENSDARG00000114478 4392 1.494 - - - - 0.759 - - - 0.735 TIA1 cytotoxic granule-associated RNA binding protein [Source:ZFIN;Acc:ZDB-GENE-030131-1506]
58. mcm4 ENSDARG00000040041 7971 1.487 - - - - - - 0.709 - 0.778 minichromosome maintenance complex component 4 [Source:ZFIN;Acc:ZDB-GENE-030131-9544]
59. HIPK1_1 HIPK1_1 8096 1.485 - - - 0.746 - - - - 0.739
60. cltca ENSDARG00000043493, ENSDARG00000115370 12561 1.482 0.710 - - - - - 0.772 - - clathrin, heavy chain a (Hc) [Source:ZFIN;Acc:ZDB-GENE-030131-2299]
61. rbm14a ENSDARG00000012723, ENSDARG00000114603 3802 1.48 - - - - - 0.774 - - 0.706 RNA binding motif protein 14a [Source:ZFIN;Acc:ZDB-GENE-050522-496]
62. smek1 ENSDARG00000042187 3509 1.477 - - - - - - 0.745 - 0.732 SMEK homolog 1, suppressor of mek1 (Dictyostelium) [Source:ZFIN;Acc:ZDB-GENE-030131-3958]
63. stmn1a ENSDARG00000004169 21169 1.475 - - - - - - 0.768 - 0.707 stathmin 1a [Source:ZFIN;Acc:ZDB-GENE-031006-14]
64. faua ENSDARG00000099022 82901 1.471 - 0.712 0.759 - - - - - - Finkel-Biskis-Reilly murine sarcoma virus (FBR-MuSV) ubiquitously expressed a [Source:ZFIN;Acc:ZDB-GENE-040426-1700]
65. ewsr1b ENSDARG00000020465, ENSDARG00000117011 10260 1.47 - - - - - - 0.757 - 0.713 EWS RNA-binding protein 1b [Source:ZFIN;Acc:ZDB-GENE-030131-1600]
66. acvr1b acvr1b 2963 1.47 - - - - - - 0.749 - 0.721
67. emc3 ENSDARG00000020607 3406 1.463 - - - - - 0.754 0.709 - - ER membrane protein complex subunit 3 [Source:ZFIN;Acc:ZDB-GENE-040426-2904]
68. ptena ENSDARG00000071018, ENSDARG00000114986, ENSDARG00000115966 6610 1.462 - - - - 0.737 - 0.725 - - phosphatase and tensin homolog A [Source:ZFIN;Acc:ZDB-GENE-030131-3776]
69. tgif1 ENSDARG00000059337 4020 1.457 - - - - - - 0.752 - 0.705 TGFB-induced factor homeobox 1 [Source:ZFIN;Acc:ZDB-GENE-030131-475]
70. zswim5 ENSDARG00000055900 4243 1.454 0.726 - - - - - - 0.728 - zinc finger, SWIM-type containing 5 [Source:ZFIN;Acc:ZDB-GENE-030925-30]
71. SNRPG ENSDARG00000099667 18697 1.453 - - - - - - 0.703 - 0.750 small nuclear ribonucleoprotein polypeptide G [Source:ZFIN;Acc:ZDB-GENE-040912-105]
72. epn1 ENSDARG00000010411 725 1.45 - - - 0.737 - - 0.713 - - epsin 1 [Source:ZFIN;Acc:ZDB-GENE-040426-2680]
73. kif22 ENSDARG00000102624 3694 1.45 - - - - - - 0.734 - 0.716 kinesin family member 22 [Source:ZFIN;Acc:ZDB-GENE-080204-34]
74. nsa2 ENSDARG00000007708 6329 1.448 - - - - - 0.724 - - 0.724 NSA2 ribosome biogenesis homolog (S. cerevisiae) [Source:ZFIN;Acc:ZDB-GENE-030131-488]
75. CREBZF ENSDARG00000089787 4261 1.448 0.719 - - - - - - - 0.729 CREB/ATF bZIP transcription factor [Source:ZFIN;Acc:ZDB-GENE-030131-8015]
76. cnot6 cnot6 7029 1.447 - - - - - 0.739 0.708 - -
77. ldb1a ENSDARG00000010137 3035 1.446 - - - - 0.719 - - - 0.727 LIM domain binding 1a [Source:ZFIN;Acc:ZDB-GENE-990415-138]
78. vta1 ENSDARG00000013732 6072 1.443 - - - - - 0.732 0.711 - - vesicle (multivesicular body) trafficking 1 [Source:ZFIN;Acc:ZDB-GENE-040426-2154]
79. SCML2 ENSDARG00000012949 1310 1.436 - - - - - - 0.724 - 0.712 Scm polycomb group protein like 2 [Source:ZFIN;Acc:ZDB-GENE-130530-546]
80. baz1b ENSDARG00000102832, ENSDARG00000114866 3543 1.435 0.732 - - - - - - - 0.703 bromodomain adjacent to zinc finger domain, 1B [Source:ZFIN;Acc:ZDB-GENE-010328-16]
81. hnrnpl2 ENSDARG00000059303, ENSDARG00000114431 6633 1.43 - - - - 0.709 - 0.721 - - heterogeneous nuclear ribonucleoprotein L2 [Source:ZFIN;Acc:ZDB-GENE-040426-2707]
82. hmgn3 ENSDARG00000036754, ENSDARG00000116728 11573 1.426 - - - - - - 0.723 - 0.703 high mobility group nucleosomal binding domain 3 [Source:ZFIN;Acc:ZDB-GENE-041114-180]
83. parp1 ENSDARG00000019529 6787 1.426 - - - - 0.713 - - - 0.713 poly (ADP-ribose) polymerase 1 [Source:ZFIN;Acc:ZDB-GENE-030131-3955]
84. cdh2 ENSDARG00000018693, ENSDARG00000117201 9869 1.425 - - - - 0.705 - - - 0.720 cadherin 2, type 1, N-cadherin (neuronal) [Source:ZFIN;Acc:ZDB-GENE-990415-171]
85. sumo3a ENSDARG00000028119 13447 1.417 - - - - - - 0.701 - 0.716 small ubiquitin-like modifier 3a [Source:ZFIN;Acc:ZDB-GENE-040426-2133]
86. banf1 ENSDARG00000037009 16466 1.416 - - - - 0.702 0.714 - - - barrier to autointegration factor 1 [Source:ZFIN;Acc:ZDB-GENE-030131-6657]
87. lbr ENSDARG00000014013 4835 1.411 - - - - 0.706 - 0.705 - - lamin B receptor [Source:ZFIN;Acc:ZDB-GENE-030804-11]
88. ywhaqa ENSDARG00000042539 7034 0.99 - 0.990 - - - - - - - tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, theta polypeptide a [Source:ZFIN;Acc:ZDB-GENE-040122-5]
89. dab2 ENSDARG00000031761 2000 0.989 - 0.989 - - - - - - - Dab, mitogen-responsive phosphoprotein, homolog 2 (Drosophila) [Source:ZFIN;Acc:ZDB-GENE-040303-1]
90. eif4g2a ENSDARG00000020377, ENSDARG00000112658 6895 0.988 - 0.988 - - - - - - - eukaryotic translation initiation factor 4, gamma 2a [Source:ZFIN;Acc:ZDB-GENE-030131-2173]
91. naa50 ENSDARG00000027825, ENSDARG00000116858 3221 0.988 - 0.988 - - - - - - - N(alpha)-acetyltransferase 50, NatE catalytic subunit [Source:ZFIN;Acc:ZDB-GENE-040801-142]
92. tra2a ENSDARG00000007863 4449 0.987 - 0.987 - - - - - - - transformer 2 alpha homolog [Source:ZFIN;Acc:ZDB-GENE-040426-1391]
93. mrp63 mrp63 2500 0.987 - 0.987 - - - - - - -
94. frem3 ENSDARG00000074677, ENSDARG00000111196, ENSDARG00000114207 2326 0.987 - 0.987 - - - - - - - Fras1 related extracellular matrix 3 [Source:ZFIN;Acc:ZDB-GENE-030131-9788]
95. FAM195A FAM195A 1134 0.987 - 0.987 - - - - - - -
96. col4a1 ENSDARG00000055009 3083 0.987 - 0.987 - - - - - - - collagen, type IV, alpha 1 [Source:ZFIN;Acc:ZDB-GENE-081105-114]
97. rnf40 ENSDARG00000054201, ENSDARG00000114667 2440 0.986 - - 0.986 - - - - - - ring finger protein 40 [Source:ZFIN;Acc:ZDB-GENE-030131-6607]
98. eif5 ENSDARG00000003681 7986 0.986 - 0.986 - - - - - - - eukaryotic translation initiation factor 5 [Source:ZFIN;Acc:ZDB-GENE-030131-975]
99. AKAP2 AKAP2 4178 0.986 - 0.986 - - - - - - -
100. tfe3a ENSDARG00000098903 1530 0.985 - 0.985 - - - - - - - transcription factor binding to IGHM enhancer 3a [Source:ZFIN;Acc:ZDB-GENE-010919-2]

There are 1012 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA