Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

Zebrafish data search


search
Exact
Search
Limit to:

{{libname.name}} 

Results for rtn3

Gene Name Gene ID Reads Annotation
rtn3 ENSDARG00000091348 2070 reticulon 3 [Source:ZFIN;Acc:ZDB-GENE-030710-5]










Genes with expression patterns similar to rtn3

Nr. Gene Name Gene ID Reads Σ scores 28hpf trunk1 28hpf trunk2 28hpf whole1 28hpf whole2 28hpf whole3 PA 40hpf trunk1 40hpf trunk2 40hpf whole embryo1 40hpf whole embryo2 Annotation
1. rtn3 ENSDARG00000091348 2070 9 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 reticulon 3 [Source:ZFIN;Acc:ZDB-GENE-030710-5]
2. abhd10b 2128 1.707 - 0.998 - - - - 0.709 - - abhydrolase domain containing 10b
3. drg1 ENSDARG00000039345 7545 1.553 - 0.815 - - - - 0.738 - - developmentally regulated GTP binding protein 1 [Source:ZFIN;Acc:ZDB-GENE-030131-8767]
4. pcnp ENSDARG00000037713 2754 1.514 - - - 0.736 - - 0.778 - - PEST proteolytic signal containing nuclear protein [Source:ZFIN;Acc:ZDB-GENE-041010-130]
5. slc27a1a ENSDARG00000006240, ENSDARG00000109799 1471 1.503 - - - 0.791 - 0.712 - - - solute carrier family 27 (fatty acid transporter), member 1a [Source:ZFIN;Acc:ZDB-GENE-050320-112]
6. ndufa1 ENSDARG00000036329, ENSDARG00000111888 18361 1.49 - - - - - 0.736 0.754 - - NADH:ubiquinone oxidoreductase subunit A1 [Source:ZFIN;Acc:ZDB-GENE-040625-168]
7. cox7c ENSDARG00000104537 12169 1.473 - - - - - 0.727 0.746 - - cytochrome c oxidase subunit 7C [Source:ZFIN;Acc:ZDB-GENE-030131-8062]
8. rassf1 ENSDARG00000004840 1248 1.444 - - - 0.726 - - - 0.718 - Ras association (RalGDS/AF-6) domain family 1 [Source:ZFIN;Acc:ZDB-GENE-040912-14]
9. tmed9 ENSDARG00000004261 10013 1.437 - 0.704 - - - - 0.733 - - transmembrane p24 trafficking protein 9 [Source:ZFIN;Acc:ZDB-GENE-050417-434]
10. hoxc12b ENSDARG00000103133 1290 1 - 1.000 - - - - - - - homeobox C12b [Source:ZFIN;Acc:ZDB-GENE-000329-17]
11. PITPNC1 ENSDARG00000099260 1096 1 - 1.000 - - - - - - - phosphatidylinositol transfer protein cytoplasmic 1 [Source:HGNC Symbol;Acc:HGNC:21045]
12. qdpra ENSDARG00000040190 4064 1 - 1.000 - - - - - - - quinoid dihydropteridine reductase a [Source:ZFIN;Acc:ZDB-GENE-070705-197]
13. fynb ENSDARG00000025319 1175 1 - 1.000 - - - - - - - FYN proto-oncogene, Src family tyrosine kinase b [Source:ZFIN;Acc:ZDB-GENE-050706-89]
14. ptpreb ENSDARG00000021151 739 1 - 1.000 - - - - - - - protein tyrosine phosphatase, receptor type, E, b [Source:ZFIN;Acc:ZDB-GENE-060503-263]
15. nfyba ENSDARG00000039185 1804 1 - 1.000 - - - - - - - nuclear transcription factor Y, beta a [Source:ZFIN;Acc:ZDB-GENE-050417-13]
16. id4 ENSDARG00000045131 2916 1 - 1.000 - - - - - - - inhibitor of DNA binding 4 [Source:ZFIN;Acc:ZDB-GENE-051113-208]
17. fam177a1 ENSDARG00000079636 2391 1 - 1.000 - - - - - - - family with sequence similarity 177, member A1 [Source:ZFIN;Acc:ZDB-GENE-070928-21]
18. abhd17b ENSDARG00000035571 745 1 - 1.000 - - - - - - - abhydrolase domain containing 17B [Source:ZFIN;Acc:ZDB-GENE-040718-244]
19. ADAMTS17 ENSDARG00000075555 887 1 - 1.000 - - - - - - - ADAM metallopeptidase with thrombospondin type 1 motif, 17 [Source:ZFIN;Acc:ZDB-GENE-121030-7]
20. larp7 ENSDARG00000017315 1194 1 - 1.000 - - - - - - - La ribonucleoprotein domain family, member 7 [Source:ZFIN;Acc:ZDB-GENE-030131-6896]
21. hoxc13a ENSDARG00000070353 4815 1 - 1.000 - - - - - - - homeobox C13a [Source:ZFIN;Acc:ZDB-GENE-000822-4]
22. zcchc14 ENSDARG00000101242 630 1 - 1.000 - - - - - - - zinc finger, CCHC domain containing 14 [Source:ZFIN;Acc:ZDB-GENE-060503-319]
23. slc25a36b ENSDARG00000015915 1750 1 - 1.000 - - - - - - - solute carrier family 25 (pyrimidine nucleotide carrier ), member 36b [Source:ZFIN;Acc:ZDB-GENE-080219-28]
24. pdgfrl ENSDARG00000006456, ENSDARG00000116983 1020 1 - 1.000 - - - - - - - platelet-derived growth factor receptor-like [Source:ZFIN;Acc:ZDB-GENE-040426-901]
25. BX005368.2 BX005368.2 702 1 - 1.000 - - - - - - -
26. pwp1 ENSDARG00000015921 1160 0.999 - 0.999 - - - - - - - PWP1 homolog (S. cerevisiae) [Source:ZFIN;Acc:ZDB-GENE-040426-1049]
27. tsn ENSDARG00000041830, ENSDARG00000111147 1268 0.999 - 0.999 - - - - - - - translin [Source:ZFIN;Acc:ZDB-GENE-030131-6039]
28. pgm5 ENSDARG00000060745, ENSDARG00000114684 1083 0.999 - 0.999 - - - - - - - phosphoglucomutase 5 [Source:ZFIN;Acc:ZDB-GENE-060503-838]
29. dctn2 ENSDARG00000031388 3825 0.999 - 0.999 - - - - - - - dynactin 2 (p50) [Source:ZFIN;Acc:ZDB-GENE-040426-1279]
30. mrpl11 ENSDARG00000013075 2927 0.999 - 0.999 - - - - - - - mitochondrial ribosomal protein L11 [Source:ZFIN;Acc:ZDB-GENE-040718-294]
31. ak4 ENSDARG00000006546 1528 0.999 - 0.999 - - - - - - - adenylate kinase 4 [Source:ZFIN;Acc:ZDB-GENE-040426-2505]
32. smg8 ENSDARG00000061378 1164 0.999 - 0.999 - - - - - - - SMG8 nonsense mediated mRNA decay factor [Source:ZFIN;Acc:ZDB-GENE-091204-279]
33. si:dkey-117m1.4 ENSDARG00000093120 1666 0.999 - 0.999 - - - - - - - si:dkey-117m1.4 [Source:ZFIN;Acc:ZDB-GENE-090313-177]
34. pon1 ENSDARG00000032496 1375 0.999 - 0.999 - - - - - - - paraoxonase 1 [Source:ZFIN;Acc:ZDB-GENE-040912-6]
35. si:dkeyp-44a8.2 ENSDARG00000092493 8308 0.999 - 0.999 - - - - - - - si:dkeyp-44a8.2 [Source:ZFIN;Acc:ZDB-GENE-070705-542]
36. RBM33 RBM33 1954 0.999 - 0.999 - - - - - - -
37. tyms ENSDARG00000042894 3068 0.999 - 0.999 - - - - - - - thymidylate synthetase [Source:ZFIN;Acc:ZDB-GENE-040426-59]
38. fgfrl1a ENSDARG00000032617 1546 0.999 - 0.999 - - - - - - - fibroblast growth factor receptor like 1a [Source:ZFIN;Acc:ZDB-GENE-040128-2]
39. itpkcb ENSDARG00000067741 2370 0.999 - 0.999 - - - - - - - inositol-trisphosphate 3-kinase Cb [Source:ZFIN;Acc:ZDB-GENE-080225-27]
40. plod1a ENSDARG00000059746 3364 0.999 - 0.999 - - - - - - - procollagen-lysine, 2-oxoglutarate 5-dioxygenase 1a [Source:ZFIN;Acc:ZDB-GENE-030131-3165]
41. pkmb ENSDARG00000099860 25094 0.998 - 0.998 - - - - - - - pyruvate kinase M1/2b [Source:ZFIN;Acc:ZDB-GENE-040801-230]
42. usp7 ENSDARG00000073710 7017 0.998 - 0.998 - - - - - - - ubiquitin specific peptidase 7 (herpes virus-associated) [Source:ZFIN;Acc:ZDB-GENE-030131-3656]
43. ube2i2 ube2i2 4828 0.998 - 0.998 - - - - - - -
44. ddx21 ENSDARG00000063626 6695 0.998 - 0.998 - - - - - - - DEAD (Asp-Glu-Ala-Asp) box helicase 21 [Source:ZFIN;Acc:ZDB-GENE-031113-10]
45. fras1 ENSDARG00000054619, ENSDARG00000114204 4459 0.998 - 0.998 - - - - - - - Fraser extracellular matrix complex subunit 1 [Source:ZFIN;Acc:ZDB-GENE-060526-68]
46. COLGALT1 ENSDARG00000073974 5069 0.997 - 0.997 - - - - - - - collagen beta(1-O)galactosyltransferase 1 [Source:ZFIN;Acc:ZDB-GENE-070720-6]
47. tgm2a ENSDARG00000070157 4516 0.996 - 0.996 - - - - - - - transglutaminase 2, C polypeptide A [Source:ZFIN;Acc:ZDB-GENE-040912-78]
48. SPEG SPEG 4017 0.996 - 0.996 - - - - - - -
49. h2afy2_1 ENSDARG00000087897 9887 0.995 - 0.995 - - - - - - - H2A histone family, member Y2 [Source:ZFIN;Acc:ZDB-GENE-050913-114]
50. spcs2 ENSDARG00000042823 10032 0.994 - 0.994 - - - - - - - signal peptidase complex subunit 2 [Source:ZFIN;Acc:ZDB-GENE-050320-32]
51. tmem189 ENSDARG00000042732 4004 0.994 - 0.994 - - - - - - - transmembrane protein 189 [Source:ZFIN;Acc:ZDB-GENE-041010-150]
52. chd7 ENSDARG00000075211 12085 0.993 - 0.993 - - - - - - - chromodomain helicase DNA binding protein 7 [Source:ZFIN;Acc:ZDB-GENE-070912-179]
53. VMA21 ENSDARG00000093945, ENSDARG00000113532 7555 0.988 - 0.988 - - - - - - - VMA21 vacuolar H+-ATPase homolog (S. cerevisiae) [Source:ZFIN;Acc:ZDB-GENE-081104-272]
54. sepw2a 8597 0.987 - 0.987 - - - - - - - selenoprotein W, 2a
55. dip2a ENSDARG00000078058 1625 0.987 - 0.987 - - - - - - - disco-interacting protein 2 homolog A [Source:ZFIN;Acc:ZDB-GENE-091204-2]
56. COL2A1 COL2A1 18161 0.987 - 0.987 - - - - - - -
57. chmp4b chmp4b 5318 0.985 - 0.985 - - - - - - -
58. KRTCAP2 ENSDARG00000070386 10103 0.98 - 0.980 - - - - - - - keratinocyte associated protein 2 [Source:ZFIN;Acc:ZDB-GENE-060825-91]
59. ptmaa ENSDARG00000021113, ENSDARG00000110479 42345 0.976 - 0.976 - - - - - - - prothymosin alpha a [Source:ZFIN;Acc:ZDB-GENE-030131-7647]
60. lman1 ENSDARG00000069980 2550 0.975 - 0.975 - - - - - - - lectin, mannose-binding, 1 [Source:ZFIN;Acc:ZDB-GENE-060201-4]
61. pdip5 pdip5 2643 0.975 - 0.975 - - - - - - -
62. FP085405.1 FP085405.1 5189 0.965 - 0.965 - - - - - - -
63. eef1da ENSDARG00000102291 9339 0.965 - 0.965 - - - - - - - eukaryotic translation elongation factor 1 delta a (guanine nucleotide exchange protein) [Source:ZFIN;Acc:ZDB-GENE-040426-2740]
64. abce1 ENSDARG00000007216 7502 0.964 - 0.964 - - - - - - - ATP-binding cassette, sub-family E (OABP), member 1 [Source:ZFIN;Acc:ZDB-GENE-040426-1995]
65. psmd6 ENSDARG00000070674 4675 0.964 - 0.964 - - - - - - - proteasome 26S subunit, non-ATPase 6 [Source:ZFIN;Acc:ZDB-GENE-040426-1038]
66. rpl37 ENSDARG00000034291, ENSDARG00000076360 13668 0.955 - 0.955 - - - - - - - ribosomal protein L37 [Source:ZFIN;Acc:ZDB-GENE-040625-39]
67. HIST1H4C HIST1H4C 6190 0.952 - 0.952 - - - - - - -
68. zgc:92061 zgc:92061 21304 0.949 - 0.949 - - - - - - -
69. adka ENSDARG00000039429 7670 0.941 - 0.941 - - - - - - - adenosine kinase a [Source:ZFIN;Acc:ZDB-GENE-030425-3]
70. mvp ENSDARG00000021242 6875 0.935 - 0.935 - - - - - - - major vault protein [Source:ZFIN;Acc:ZDB-GENE-030826-33]
71. znf185 ENSDARG00000103917 7195 0.926 - 0.926 - - - - - - - zinc finger protein 185 with LIM domain [Source:ZFIN;Acc:ZDB-GENE-061103-355]
72. znf593 ENSDARG00000044102, ENSDARG00000109934 2490 0.924 - 0.924 - - - - - - - zinc finger protein 593 [Source:ZFIN;Acc:ZDB-GENE-040426-1789]
73. CABZ01034848.1 CABZ01034848.1 9936 0.918 - 0.918 - - - - - - -
74. pcyt2 ENSDARG00000043003 3506 0.911 - 0.911 - - - - - - - phosphate cytidylyltransferase 2, ethanolamine [Source:ZFIN;Acc:ZDB-GENE-041010-132]
75. psma1 ENSDARG00000101560 5390 0.909 - 0.909 - - - - - - - proteasome subunit alpha 1 [Source:ZFIN;Acc:ZDB-GENE-040801-15]
76. cd164 ENSDARG00000013628 21750 0.907 - 0.907 - - - - - - - CD164 molecule, sialomucin [Source:ZFIN;Acc:ZDB-GENE-030131-1598]
77. rps26l ENSDARG00000030408 146322 0.895 - 0.895 - - - - - - - ribosomal protein S26, like [Source:ZFIN;Acc:ZDB-GENE-040426-1706]
78. mdh2 ENSDARG00000043371 14485 0.884 - 0.884 - - - - - - - malate dehydrogenase 2, NAD (mitochondrial) [Source:ZFIN;Acc:ZDB-GENE-040426-2143]
79. hspb1 ENSDARG00000041065 13534 0.882 - 0.882 - - - - - - - heat shock protein, alpha-crystallin-related, 1 [Source:ZFIN;Acc:ZDB-GENE-030326-4]
80. im:7136729 im:7136729 1625 0.877 - - - 0.877 - - - - -
81. MAL 9331 0.871 - 0.871 - - - - - - - mal, T-cell differentiation protein
82. efemp2a ENSDARG00000094324 39261 0.864 - 0.864 - - - - - - - EGF containing fibulin extracellular matrix protein 2a [Source:ZFIN;Acc:ZDB-GENE-041212-8]
83. h3f3b.1 ENSDARG00000020504, ENSDARG00000068434, ENSDARG00000068436 50840 0.854 - 0.854 - - - - - - - H3 histone, family 3B.1 [Source:ZFIN;Acc:ZDB-GENE-050417-65]
84. rpl7l1 ENSDARG00000042864 3256 0.851 - - - - - - 0.851 - - ribosomal protein L7-like 1 [Source:ZFIN;Acc:ZDB-GENE-030131-970]
85. hnrnpa0l ENSDARG00000036161, ENSDARG00000076380, ENSDARG00000114889 72444 0.85 - 0.850 - - - - - - - heterogeneous nuclear ribonucleoprotein A0, like [Source:ZFIN;Acc:ZDB-GENE-030131-618]
86. calua ENSDARG00000045676 16674 0.849 - 0.849 - - - - - - - calumenin a [Source:ZFIN;Acc:ZDB-GENE-040625-166]
87. tmeff1b ENSDARG00000056740 11253 0.847 - 0.847 - - - - - - - transmembrane protein with EGF-like and two follistatin-like domains 1b [Source:ZFIN;Acc:ZDB-GENE-050706-143]
88. psmc4 ENSDARG00000027099, ENSDARG00000109415 6643 0.847 - - - - - - 0.847 - - proteasome 26S subunit, ATPase 4 [Source:ZFIN;Acc:ZDB-GENE-030131-5083]
89. tceb1b 14935 0.844 - 0.844 - - - - - - - transcription elongation factor B (SIII), polypeptide 1b
90. rps12 ENSDARG00000036875, ENSDARG00000115157 92636 0.842 - 0.842 - - - - - - - ribosomal protein S12 [Source:ZFIN;Acc:ZDB-GENE-030131-8951]
91. lyrm2 ENSDARG00000033138 5597 0.841 - 0.841 - - - - - - - LYR motif containing 2 [Source:ZFIN;Acc:ZDB-GENE-040914-27]
92. rasl11a ENSDARG00000046013 1627 0.84 - - - 0.840 - - - - - RAS-like, family 11, member A [Source:ZFIN;Acc:ZDB-GENE-050417-384]
93. ccdc47 ENSDARG00000054362 5970 0.838 - - - - - - 0.838 - - coiled-coil domain containing 47 [Source:ZFIN;Acc:ZDB-GENE-040912-15]
94. BX004812.1 ENSDARG00000096968 5467 0.837 - 0.837 - - - - - - -
95. zgc:162944 ENSDARG00000069846, ENSDARG00000112524 3898 0.829 - - - - - - 0.829 - - zgc:162944 [Source:ZFIN;Acc:ZDB-GENE-070424-75]
96. psmc5 ENSDARG00000015315 8458 0.825 - - - - - - 0.825 - - proteasome 26S subunit, ATPase 5 [Source:ZFIN;Acc:ZDB-GENE-030131-6547]
97. NDUFC2 ENSDARG00000102115 7848 0.82 - 0.820 - - - - - - - NADH:ubiquinone oxidoreductase subunit C2 [Source:ZFIN;Acc:ZDB-GENE-050320-87]
98. zfyve21 ENSDARG00000027887 1687 0.819 - - - 0.819 - - - - - zinc finger, FYVE domain containing 21 [Source:ZFIN;Acc:ZDB-GENE-030131-1296]
99. tcf7l1a ENSDARG00000038159 2288 0.817 - - - - - - 0.817 - - transcription factor 7 like 1a [Source:ZFIN;Acc:ZDB-GENE-980605-30]
100. ppp1r3ca ENSDARG00000071005, ENSDARG00000111817, ENSDARG00000112962 2641 0.817 - - - - - - 0.817 - - protein phosphatase 1, regulatory subunit 3Ca [Source:ZFIN;Acc:ZDB-GENE-040718-70]

There are 183 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA