Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

Zebrafish data search


search
Exact
Search
Limit to:

{{libname.name}} 

Results for rp1

Gene Name Gene ID Reads Annotation
rp1 ENSDARG00000077687 18 retinitis pigmentosa 1 (autosomal dominant) [Source:ZFIN;Acc:ZDB-GENE-070912-612]










Genes with expression patterns similar to rp1

Nr. Gene Name Gene ID Reads Σ scores 28hpf trunk1 28hpf trunk2 28hpf whole1 28hpf whole2 28hpf whole3 PA 40hpf trunk1 40hpf trunk2 40hpf whole embryo1 40hpf whole embryo2 Annotation
1. rp1 ENSDARG00000077687 18 8 1.000 - 1.000 1.000 1.000 1.000 1.000 1.000 1.000 retinitis pigmentosa 1 (autosomal dominant) [Source:ZFIN;Acc:ZDB-GENE-070912-612]
2. BX005423.3 BX005423.3 33 1.947 0.947 - - - - 1.000 - - -
3. si:ch211-199m9.3 50 1.824 0.866 - - - - - 0.958 - - si:ch211-199m9.3, transcript variant X3
4. ncf4 ENSDARG00000040812, ENSDARG00000110339 45 1.823 1.000 - - - - 0.823 - - - neutrophil cytosolic factor 4 [Source:ZFIN;Acc:ZDB-GENE-041124-1]
5. rgs13 ENSDARG00000017653 8 1.796 1.000 - - - - - - - 0.796 regulator of G protein signaling 13 [Source:ZFIN;Acc:ZDB-GENE-070410-138]
6. ormdl3 ENSDARG00000025555, ENSDARG00000110450 70 1.773 - - - - - 0.893 0.880 - - ORMDL sphingolipid biosynthesis regulator 3 [Source:ZFIN;Acc:ZDB-GENE-041010-190]
7. esrrgb ENSDARG00000011696 108 1.726 - - - - 0.813 0.913 - - - estrogen-related receptor gamma b [Source:ZFIN;Acc:ZDB-GENE-040616-4]
8. zgc:174651 zgc:174651 90 1.705 0.781 - - - - 0.924 - - -
9. PMFBP1 ENSDARG00000101917 292 1.7 0.971 - - - - - 0.729 - - polyamine modulated factor 1 binding protein 1 [Source:ZFIN;Acc:ZDB-GENE-131127-619]
10. ZMAT1 ZMAT1 219 1.667 0.919 - - - - 0.748 - - -
11. LRRC16B 84 1.667 - - - - - 0.814 0.853 - - leucine rich repeat containing 16B, transcript variant X2
12. zgc:171452 ENSDARG00000074069 6 1.654 - - - - - 0.920 0.734 - - zgc:171452 [Source:ZFIN;Acc:ZDB-GENE-071004-84]
13. si:ch73-103l1.2 ENSDARG00000096505 17 1.654 - - - - - 0.920 0.734 - - si:ch73-103l1.2 [Source:ZFIN;Acc:ZDB-GENE-121214-226]
14. cramp1l cramp1l 700 1.648 - - - - - 0.875 0.773 - -
15. si:dkeyp-53d3.6 204 1.646 0.882 - - - - - 0.764 - - si:dkeyp-53d3.6, transcript variant X1
16. tmem230a ENSDARG00000027687, ENSDARG00000109832 333 1.618 - - - - - 0.845 0.773 - - transmembrane protein 230a [Source:ZFIN;Acc:ZDB-GENE-040822-20]
17. hoxd13a ENSDARG00000059256 1190 1.61 0.799 - - - - 0.811 - - - homeobox D13a [Source:ZFIN;Acc:ZDB-GENE-990415-119]
18. zgc:173480 171 1.595 0.740 - - - - 0.855 - - - zgc:173480
19. si:dkey-4c15.14 ENSDARG00000094410 107 1.594 0.742 - - - - 0.852 - - - si:dkey-4c15.14 [Source:ZFIN;Acc:ZDB-GENE-050420-79]
20. myo7bb ENSDARG00000077201 7 1.591 - - - 0.874 - - - 0.717 - myosin VIIBb [Source:ZFIN;Acc:ZDB-GENE-070912-482]
21. si:dkey-104n9.1 ENSDARG00000093042 41 1.583 0.858 - - - 0.725 - - - - si:dkey-104n9.1 [Source:ZFIN;Acc:ZDB-GENE-081104-300]
22. abhd6a ENSDARG00000060756 122 1.581 0.798 - - - - 0.783 - - - abhydrolase domain containing 6a [Source:ZFIN;Acc:ZDB-GENE-090925-1]
23. si:dkey-152b24.7 ENSDARG00000099715 26 1.56 - - - - 0.705 0.855 - - - si:dkey-152b24.7 [Source:ZFIN;Acc:ZDB-GENE-100921-77]
24. nbas ENSDARG00000008593 30 1.549 0.722 - - - - 0.827 - - - neuroblastoma amplified sequence [Source:ZFIN;Acc:ZDB-GENE-041014-367]
25. gprc5c ENSDARG00000100862 457 1.478 0.744 - - - - 0.734 - - - G protein-coupled receptor, class C, group 5, member C [Source:ZFIN;Acc:ZDB-GENE-070928-27]
26. BX511263.1 BX511263.1 64 1.476 0.732 - - - - 0.744 - - -
27. CABZ01044346.1 CABZ01044346.1 12 1.451 - - 0.717 - - - 0.734 - -
28. si:dkey-30j22.3 si:dkey-30j22.3 17 1.448 - - - - 0.714 - 0.734 - -
29. faima ENSDARG00000005828 154 1.436 0.709 - - - - 0.727 - - - Fas apoptotic inhibitory molecule a [Source:ZFIN;Acc:ZDB-GENE-040718-323]
30. ZBTB8A ENSDARG00000059226 98 1.43 - - - - 0.705 0.725 - - - zinc finger and BTB domain containing 8A [Source:ZFIN;Acc:ZDB-GENE-060421-5153]
31. RBBP6_5 RBBP6_5 2 1 - - - - 1.000 - - - -
32. cnot7 ENSDARG00000032116, ENSDARG00000115413 184 1 1.000 - - - - - - - - CCR4-NOT transcription complex, subunit 7 [Source:ZFIN;Acc:ZDB-GENE-061013-29]
33. zgc:110353 ENSDARG00000039443 80 1 1.000 - - - - - - - - zgc:110353 [Source:ZFIN;Acc:ZDB-GENE-050417-310]
34. CD53 CD53 108 1 1.000 - - - - - - - -
35. bcl9l ENSDARG00000055054 128 1 1.000 - - - - - - - - B cell CLL/lymphoma 9-like [Source:ZFIN;Acc:ZDB-GENE-040927-29]
36. chrna7 ENSDARG00000101702 50 1 1.000 - - - - - - - - cholinergic receptor, nicotinic, alpha 7 (neuronal) [Source:ZFIN;Acc:ZDB-GENE-040108-3]
37. tcf3a ENSDARG00000005915 12 1 1.000 - - - - - - - - transcription factor 3a [Source:ZFIN;Acc:ZDB-GENE-990415-51]
38. admb ENSDARG00000069027 67 1 1.000 - - - - - - - - adrenomedullin b [Source:ZFIN;Acc:ZDB-GENE-120221-6]
39. SLC22A14 SLC22A14 24 1 1.000 - - - - - - - -
40. CR352256.1 CR352256.1 3 1 1.000 - - - - - - - -
41. MEF2A MEF2A 2 1 - - - - 1.000 - - - -
42. sema6e ENSDARG00000000189 35 1 - - - - 1.000 - - - - sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6E [Source:ZFIN;Acc:ZDB-GENE-040724-119]
43. ugt2b3 46 1 1.000 - - - - - - - - UDP glucuronosyltransferase 2 family, polypeptide B3
44. BX465848.2 ENSDARG00000116920 6 1 - - - - 1.000 - - - -
45. CR628395.1 ENSDARG00000116298 75 1 1.000 - - - - - - - -
46. si:dkey-105n5.3 si:dkey-105n5.3 9 1 1.000 - - - - - - - -
47. BX569778.1 BX569778.1 36 1 1.000 - - - - - - - -
48. CABZ01049058.1 CABZ01049058.1 7 1 1.000 - - - - - - - -
49. FRMPD2 ENSDARG00000074119 5 1 1.000 - - - - - - - - FERM and PDZ domain containing 2 [Source:ZFIN;Acc:ZDB-GENE-110315-2]
50. si:dkeyp-73d8.8 ENSDARG00000094045 17 1 1.000 - - - - - - - - si:dkeyp-73d8.8 [Source:ZFIN;Acc:ZDB-GENE-070912-684]
51. sema6d ENSDARG00000002748 133 1 1.000 - - - - - - - - sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D [Source:ZFIN;Acc:ZDB-GENE-040426-1933]
52. npdc1 npdc1 221 1 1.000 - - - - - - - -
53. sst2 ENSDARG00000014190 617 1 1.000 - - - - - - - - somatostatin 2 [Source:ZFIN;Acc:ZDB-GENE-010219-2]
54. klc4_1 ENSDARG00000086985 22 1 1.000 - - - - - - - - kinesin light chain 4 [Source:ZFIN;Acc:ZDB-GENE-050417-350]
55. c1ql3b ENSDARG00000028521, ENSDARG00000036483 40 1 - - - - - - 1.000 - - complement component 1, q subcomponent-like 3b [Source:ZFIN;Acc:ZDB-GENE-040426-1836]
56. si:dkey-259p7.1 si:dkey-259p7.1 59 1 1.000 - - - - - - - -
57. si:dkey-3b8.4 si:dkey-3b8.4 13 1 1.000 - - - - - - - -
58. fam228a ENSDARG00000042936, ENSDARG00000114092 30 1 1.000 - - - - - - - - family with sequence similarity 228, member A [Source:ZFIN;Acc:ZDB-GENE-041014-83]
59. SPAG16 7 1 1.000 - - - - - - - - sperm associated antigen 16
60. tcf23 ENSDARG00000087381 6 1 1.000 - - - - - - - - transcription factor 23 [Source:ZFIN;Acc:ZDB-GENE-090806-5]
61. crybb1l2 ENSDARG00000016793 723 1 1.000 - - - - - - - - crystallin, beta B1, like 2 [Source:ZFIN;Acc:ZDB-GENE-070822-18]
62. BX548000.1 ENSDARG00000099044 45 1 1.000 - - - - - - - -
63. klhl42 ENSDARG00000006011 46 1 1.000 - - - - - - - - kelch-like family, member 42 [Source:ZFIN;Acc:ZDB-GENE-041210-190]
64. SLC38A8 SLC38A8 17 1 1.000 - - - - - - - -
65. rhof ENSDARG00000054389, ENSDARG00000111798 15 1 1.000 - - - - - - - - ras homolog family member F [Source:ZFIN;Acc:ZDB-GENE-050522-280]
66. CT027762.3_1 CT027762.3_1 62 1 1.000 - - - - - - - -
67. zp2l1 ENSDARG00000055415, ENSDARG00000110573 2 1 1.000 - - - - - - - - zona pellucida glycoprotein 2, like 1 [Source:ZFIN;Acc:ZDB-GENE-060818-3]
68. si:dkey-37o8.1 ENSDARG00000071727 64 1 1.000 - - - - - - - - si:dkey-37o8.1 [Source:ZFIN;Acc:ZDB-GENE-030131-5667]
69. C3H16orf89 C3H16orf89 449 1 1.000 - - - - - - - -
70. si:ch211-171b20.3 ENSDARG00000094794 2 1 1.000 - - - - - - - - si:ch211-171b20.3 [Source:ZFIN;Acc:ZDB-GENE-091204-278]
71. ft2 ENSDARG00000109567 5 1 1.000 - - - - - - - - alpha(1,3)fucosyltransferase gene 2 [Source:ZFIN;Acc:ZDB-GENE-990715-18]
72. caps2 ENSDARG00000058486 4 1 1.000 - - - - - - - - calcyphosine 2 [Source:ZFIN;Acc:ZDB-GENE-091204-449]
73. C6H21orf58 C6H21orf58 14 1 1.000 - - - - - - - -
74. TFPT ENSDARG00000089572, ENSDARG00000111694 112 1 1.000 - - - - - - - - TCF3 (E2A) fusion partner [Source:ZFIN;Acc:ZDB-GENE-140106-241]
75. C10H5orf42 C10H5orf42 5 1 1.000 - - - - - - - -
76. zgc:153921_1 ENSDARG00000020738, ENSDARG00000038405 19 1 1.000 - - - - - - - - zgc:153921 [Source:ZFIN;Acc:ZDB-GENE-060929-816]
77. CU915778.2 CU915778.2 194 1 1.000 - - - - - - - -
78. rdh1 ENSDARG00000017882 24 1 - - - - 1.000 - - - - retinol dehydrogenase 1 [Source:ZFIN;Acc:ZDB-GENE-030912-15]
79. si:ch211-196c10.6 si:ch211-196c10.6 3 1 - - - - 1.000 - - - -
80. si:dkey-3d18.5 ENSDARG00000096239 3 1 1.000 - - - - - - - - si:dkey-3d18.5 [Source:ZFIN;Acc:ZDB-GENE-120215-143]
81. BX601644.1 ENSDARG00000090632 2 1 1.000 - - - - - - - - cytokine receptor-like factor 2 [Source:NCBI gene;Acc:100294510]
82. abcg2b ENSDARG00000079361, ENSDARG00000110043 11 1 - - - - 1.000 - - - - ATP-binding cassette, sub-family G (WHITE), member 2b [Source:ZFIN;Acc:ZDB-GENE-050517-36]
83. nr2e1 ENSDARG00000017107 340 1 1.000 - - - - - - - - nuclear receptor subfamily 2, group E, member 1 [Source:ZFIN;Acc:ZDB-GENE-040801-127]
84. crygmx ENSDARG00000053862 482 1 1.000 - - - - - - - - crystallin, gamma MX [Source:ZFIN;Acc:ZDB-GENE-030131-7732]
85. FP103003.1_1 FP103003.1_1 6 1 1.000 - - - - - - - -
86. tlcd1 ENSDARG00000002391 90 1 1.000 - - - - - - - - TLC domain containing 1 [Source:ZFIN;Acc:ZDB-GENE-041010-173]
87. gabpb1 ENSDARG00000023659 26 1 1.000 - - - - - - - - GA binding protein transcription factor subunit beta 1 [Source:ZFIN;Acc:ZDB-GENE-061027-46]
88. dio2 ENSDARG00000094857 17 1 1.000 - - - - - - - - iodothyronine deiodinase 2 [Source:ZFIN;Acc:ZDB-GENE-030327-4]
89. si:dkey-247i3.6 ENSDARG00000092139, ENSDARG00000094308, ENSDARG00000100214 22 1 1.000 - - - - - - - - si:dkey-247i3.6 [Source:ZFIN;Acc:ZDB-GENE-110913-83]
90. CYP46A1 CYP46A1 16 1 1.000 - - - - - - - -
91. dnase1l3l dnase1l3l 16 1 1.000 - - - - - - - -
92. DUPD1 2 1 - - - - 1.000 - - - - dual specificity phosphatase and pro isomerase domain containing 1
93. CABZ01067072.1 CABZ01067072.1 17 1 1.000 - - - - - - - -
94. si:dkey-71l1.1 ENSDARG00000052411 11 1 1.000 - - - - - - - - si:dkey-71l1.1 [Source:ZFIN;Acc:ZDB-GENE-070705-489]
95. EXT1_1 EXT1_1 3 1 - - - - 1.000 - - - -
96. kcnc1b ENSDARG00000032959, ENSDARG00000113595 36 1 1.000 - - - - - - - - potassium voltage-gated channel, Shaw-related subfamily, member 1b [Source:ZFIN;Acc:ZDB-GENE-080414-3]
97. si:ch211-152p23.2 ENSDARG00000094519 4 1 1.000 - - - - - - - - si:ch211-152p23.2 [Source:ZFIN;Acc:ZDB-GENE-081104-134]
98. TEAD1 TEAD1 43 1 1.000 - - - - - - - -
99. zgc:113425 ENSDARG00000026616 29 1 1.000 - - - - - - - - zgc:113425 [Source:ZFIN;Acc:ZDB-GENE-050320-128]
100. si:ch73-222h13.1 ENSDARG00000087107 16 1 - - - - 1.000 - - - - si:ch73-222h13.1 [Source:ZFIN;Acc:ZDB-GENE-090313-144]

There are 1003 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA