Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

Zebrafish data search


search
Exact
Search
Limit to:

{{libname.name}} 

Results for rarga

Gene Name Gene ID Reads Annotation
rarga ENSDARG00000034117 1238 retinoic acid receptor gamma a [Source:ZFIN;Acc:ZDB-GENE-980526-531]










Genes with expression patterns similar to rarga

Nr. Gene Name Gene ID Reads Σ scores 28hpf trunk1 28hpf trunk2 28hpf whole1 28hpf whole2 28hpf whole3 PA 40hpf trunk1 40hpf trunk2 40hpf whole embryo1 40hpf whole embryo2 Annotation
1. rarga ENSDARG00000034117 1238 9 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 retinoic acid receptor gamma a [Source:ZFIN;Acc:ZDB-GENE-980526-531]
2. ddx6 ENSDARG00000061338 2514 2.666 - 0.996 - - - - 0.737 - 0.933 DEAD (Asp-Glu-Ala-Asp) box helicase 6 [Source:ZFIN;Acc:ZDB-GENE-070912-83]
3. cdipt ENSDARG00000070686 1318 1.931 - 0.998 - - - - - - 0.933 CDP-diacylglycerol--inositol 3-phosphatidyltransferase (phosphatidylinositol synthase) [Source:ZFIN;Acc:ZDB-GENE-040426-2536]
4. fam133b ENSDARG00000013863 5070 1.909 - 0.992 - - - - - - 0.917 family with sequence similarity 133, member B [Source:ZFIN;Acc:ZDB-GENE-060503-229]
5. wnt10a ENSDARG00000017155 491 1.898 - - 0.967 - - - - - 0.931 wingless-type MMTV integration site family, member 10a [Source:ZFIN;Acc:ZDB-GENE-990415-278]
6. dctn3 ENSDARG00000041363 3351 1.898 - - 0.960 - - - - - 0.938 dynactin 3 (p22) [Source:ZFIN;Acc:ZDB-GENE-040704-65]
7. eif4g2a ENSDARG00000020377, ENSDARG00000112658 6895 1.889 - 0.985 - - - - - - 0.904 eukaryotic translation initiation factor 4, gamma 2a [Source:ZFIN;Acc:ZDB-GENE-030131-2173]
8. ap2b1 ENSDARG00000035152 2912 1.887 - 0.997 - - - - - - 0.890 adaptor related protein complex 2 subunit beta 1 [Source:ZFIN;Acc:ZDB-GENE-030131-6564]
9. lix1l ENSDARG00000063244 2061 1.882 - 0.998 - - - - - - 0.884 limb and CNS expressed 1 like [Source:ZFIN;Acc:ZDB-GENE-060503-777]
10. AIFM2 ENSDARG00000077549 1419 1.875 - - 0.951 - - - - - 0.924 apoptosis-inducing factor, mitochondrion-associated, 2 [Source:ZFIN;Acc:ZDB-GENE-050506-76]
11. LIMD1 LIMD1 1306 1.869 - - 0.964 - - - - - 0.905
12. gltscr2 gltscr2 5763 1.844 - 0.970 - - - - - - 0.874
13. ceacam1 ENSDARG00000041119, ENSDARG00000111374 1763 1.842 - 0.999 - - - 0.843 - - - carcinoembryonic antigen-related cell adhesion molecule 1 [Source:ZFIN;Acc:ZDB-GENE-010724-14]
14. eif5 ENSDARG00000003681 7986 1.838 - 0.989 - - - - - - 0.849 eukaryotic translation initiation factor 5 [Source:ZFIN;Acc:ZDB-GENE-030131-975]
15. faub ENSDARG00000043663, ENSDARG00000111416, ENSDARG00000113054 1451 1.812 - - - - - 0.884 - - 0.928 Finkel-Biskis-Reilly murine sarcoma virus (FBR-MuSV) ubiquitously expressed b [Source:ZFIN;Acc:ZDB-GENE-050417-416]
16. tmf1 ENSDARG00000057997, ENSDARG00000115697 1500 1.778 - - 0.966 - - - - 0.812 - TATA element modulatory factor 1 [Source:ZFIN;Acc:ZDB-GENE-040801-25]
17. ppp1r14c ENSDARG00000077341 1587 1.762 - - 0.972 - 0.790 - - - - protein phosphatase 1, regulatory (inhibitor) subunit 14C [Source:ZFIN;Acc:ZDB-GENE-050706-92]
18. CYYR1 ENSDARG00000103783 4107 1.752 - 0.981 - - - - - - 0.771 cysteine/tyrosine-rich 1 [Source:ZFIN;Acc:ZDB-GENE-040426-2356]
19. ntd5 ENSDARG00000040944 4988 1.75 - - 0.917 - 0.833 - - - - ntl-dependent gene 5 [Source:ZFIN;Acc:ZDB-GENE-031030-7]
20. CABZ01074130.1 ENSDARG00000105274 26501 1.749 - - 0.971 - 0.778 - - - -
21. hoxc3a ENSDARG00000070339 3379 1.748 - 0.992 - - - - - - 0.756 homeobox C3a [Source:ZFIN;Acc:ZDB-GENE-980526-532]
22. slc43a1a ENSDARG00000037393, ENSDARG00000113118 5797 1.744 - 0.979 0.765 - - - - - - solute carrier family 43 (amino acid system L transporter), member 1a [Source:ZFIN;Acc:ZDB-GENE-030131-6327]
23. ankrd12 ENSDARG00000052419 2579 1.735 - - 0.947 - - 0.788 - - - ankyrin repeat domain 12 [Source:ZFIN;Acc:ZDB-GENE-040426-846]
24. MAP4_1 MAP4_1 1153 1.691 - - 0.958 - - 0.733 - - -
25. capn12 ENSDARG00000010758, ENSDARG00000116381 3116 1.674 - - 0.956 - 0.718 - - - - calpain 12 [Source:ZFIN;Acc:ZDB-GENE-050419-245]
26. DALRD3 ENSDARG00000068602 3062 1.672 - - - - - - - 0.757 0.915 DALR anticodon binding domain containing 3 [Source:ZFIN;Acc:ZDB-GENE-061103-415]
27. cpne1 ENSDARG00000075536 4063 1.667 - 0.926 - - - - - - 0.741 copine I [Source:ZFIN;Acc:ZDB-GENE-030131-3562]
28. TP53BP1 ENSDARG00000079000 997 1.666 - - - - - 0.711 - - 0.955 tumor protein p53 binding protein, 1 [Source:ZFIN;Acc:ZDB-GENE-030131-3695]
29. ptpmt1 ENSDARG00000013860 772 1.649 - - - - - 0.717 - - 0.932 protein tyrosine phosphatase, mitochondrial 1 [Source:ZFIN;Acc:ZDB-GENE-070112-272]
30. BX511121.1 ENSDARG00000029997 1774 1.649 - - - - 0.739 - - - 0.910
31. ctps1a ENSDARG00000030700 3868 1.625 - - 0.909 - - 0.716 - - - CTP synthase 1a [Source:ZFIN;Acc:ZDB-GENE-030131-808]
32. fam110a ENSDARG00000015293 123 1.609 0.876 - - - - - 0.733 - - family with sequence similarity 110, member A [Source:ZFIN;Acc:ZDB-GENE-030521-6]
33. SP6 ENSDARG00000099880, ENSDARG00000110548 665 1.606 - - - - 0.725 - - - 0.881 Sp6 transcription factor [Source:ZFIN;Acc:ZDB-GENE-040426-1824]
34. ist1 ENSDARG00000051888 4536 1.6 - - - - - 0.742 - - 0.858 increased sodium tolerance 1 homolog (yeast) [Source:ZFIN;Acc:ZDB-GENE-030131-179]
35. ctbp2 ctbp2 3255 1.589 - - - - - - - 0.737 0.852
36. frem2a ENSDARG00000076856 11022 1.586 - 0.815 - - 0.771 - - - - Fras1 related extracellular matrix protein 2a [Source:ZFIN;Acc:ZDB-GENE-081119-3]
37. KRTCAP2 ENSDARG00000070386 10103 1.569 - - 0.829 - - - - - 0.740 keratinocyte associated protein 2 [Source:ZFIN;Acc:ZDB-GENE-060825-91]
38. im:7150988 ENSDARG00000109310 28520 1.556 - - 0.718 - 0.838 - - - - im:7150988 [Source:ZFIN;Acc:ZDB-GENE-050309-169]
39. pou2f2b pou2f2b 134 1.547 0.778 - - 0.769 - - - - -
40. C6H22orf23 C6H22orf23 15 1.51 0.778 - - - - 0.732 - - -
41. hoxc12a ENSDARG00000070352 7409 1.51 - - - - 0.805 0.705 - - - homeobox C12a [Source:ZFIN;Acc:ZDB-GENE-000822-6]
42. CU570684.5 CU570684.5 55 1.507 0.778 - - 0.729 - - - - -
43. si:ch211-243g18.2 ENSDARG00000044261 4483 1.502 - - - - 0.756 - - - 0.746 si:ch211-243g18.2 [Source:ZFIN;Acc:ZDB-GENE-030131-2830]
44. tram2 ENSDARG00000030092 1906 1.495 - - - - - 0.769 - - 0.726 translocation associated membrane protein 2 [Source:ZFIN;Acc:ZDB-GENE-040426-2024]
45. appbp2 ENSDARG00000007566 1961 1.495 - - - - - 0.709 - - 0.786 amyloid beta precursor protein (cytoplasmic tail) binding protein 2 [Source:ZFIN;Acc:ZDB-GENE-030131-1715]
46. acsbg1 ENSDARG00000062077 2020 1.49 - - - - - 0.756 - 0.734 - acyl-CoA synthetase bubblegum family member 1 [Source:ZFIN;Acc:ZDB-GENE-110914-219]
47. pde6c ENSDARG00000100397 49 1.488 0.778 - - - - 0.710 - - - phosphodiesterase 6C, cGMP-specific, cone, alpha prime [Source:ZFIN;Acc:ZDB-GENE-040426-1664]
48. mavs ENSDARG00000069733 311 1.479 0.700 - - - - 0.779 - - - mitochondrial antiviral signaling protein [Source:ZFIN;Acc:ZDB-GENE-070112-1402]
49. syt16 ENSDARG00000030761 322 1.467 - - - - - 0.712 0.755 - - synaptotagmin XVI [Source:ZFIN;Acc:ZDB-GENE-090313-210]
50. MED8 ENSDARG00000114425 459 1.449 - - - - - 0.706 0.743 - - mediator complex subunit 8 [Source:ZFIN;Acc:ZDB-GENE-040426-2091]
51. pou5f3 ENSDARG00000044774 212 1.431 - - - - 0.731 0.700 - - - POU domain, class 5, transcription factor 3 [Source:ZFIN;Acc:ZDB-GENE-980526-485]
52. si:ch211-13f8.1 ENSDARG00000093342 274 1 - 1.000 - - - - - - - si:ch211-13f8.1 [Source:ZFIN;Acc:ZDB-GENE-061207-4]
53. lbx1a ENSDARG00000018321 634 1 - 1.000 - - - - - - - ladybird homeobox 1a [Source:ZFIN;Acc:ZDB-GENE-040724-40]
54. brca2 ENSDARG00000079015 410 1 - 1.000 - - - - - - - breast cancer 2, early onset [Source:ZFIN;Acc:ZDB-GENE-060510-3]
55. SFT2D2_1 SFT2D2_1 219 1 - 1.000 - - - - - - -
56. hic1 ENSDARG00000055493 219 1 - 1.000 - - - - - - - hypermethylated in cancer 1 [Source:ZFIN;Acc:ZDB-GENE-040713-2]
57. zgc:77158 ENSDARG00000013784 634 1 - 1.000 - - - - - - - zgc:77158 [Source:ZFIN;Acc:ZDB-GENE-040426-1799]
58. glo1 ENSDARG00000068978 1384 1 - 1.000 - - - - - - - glyoxalase 1 [Source:ZFIN;Acc:ZDB-GENE-030722-9]
59. crabp2a ENSDARG00000073978 868 1 - 1.000 - - - - - - - cellular retinoic acid binding protein 2, a [Source:ZFIN;Acc:ZDB-GENE-020320-4]
60. CABZ01061717.1 CABZ01061717.1 320 1 - 1.000 - - - - - - -
61. ms4a17a.7 ENSDARG00000043796 352 1 - 1.000 - - - - - - - membrane-spanning 4-domains, subfamily A, member 17A.7 [Source:ZFIN;Acc:ZDB-GENE-080829-2]
62. recql ENSDARG00000007175 501 1 - 1.000 - - - - - - - RecQ helicase-like [Source:ZFIN;Acc:ZDB-GENE-050809-134]
63. lsm1 ENSDARG00000043177 767 1 - 1.000 - - - - - - - LSM1, U6 small nuclear RNA associated [Source:ZFIN;Acc:ZDB-GENE-040801-68]
64. zgc:110191 zgc:110191 359 1 - 1.000 - - - - - - -
65. cnot11 ENSDARG00000068596 829 0.999 - 0.999 - - - - - - - CCR4-NOT transcription complex, subunit 11 [Source:ZFIN;Acc:ZDB-GENE-030131-8068]
66. si:ch211-87l2.1 si:ch211-87l2.1 2403 0.999 - 0.999 - - - - - - -
67. plp1a ENSDARG00000103732 3544 0.999 - 0.999 - - - - - - - proteolipid protein 1a [Source:ZFIN;Acc:ZDB-GENE-001202-1]
68. rab8b ENSDARG00000068628, ENSDARG00000111270, ENSDARG00000114110 607 0.999 - 0.999 - - - - - - - RAB8B, member RAS oncogene family [Source:ZFIN;Acc:ZDB-GENE-070620-16]
69. tert ENSDARG00000042637 463 0.999 - 0.999 - - - - - - - telomerase reverse transcriptase [Source:ZFIN;Acc:ZDB-GENE-080405-1]
70. znf740 znf740 2458 0.999 - 0.999 - - - - - - -
71. pigp ENSDARG00000038805 611 0.999 - 0.999 - - - - - - - phosphatidylinositol glycan anchor biosynthesis, class P [Source:ZFIN;Acc:ZDB-GENE-030131-4041]
72. capn1a ENSDARG00000052702 1123 0.999 - 0.999 - - - - - - - calpain 1, (mu/I) large subunit a [Source:ZFIN;Acc:ZDB-GENE-040426-1263]
73. aes ENSDARG00000021805, ENSDARG00000115836 1533 0.999 - 0.999 - - - - - - - amino-terminal enhancer of split [Source:ZFIN;Acc:ZDB-GENE-040426-1409]
74. myo9al1 myo9al1 1194 0.999 - 0.999 - - - - - - -
75. ergic2 ENSDARG00000051936, ENSDARG00000111918 798 0.999 - 0.999 - - - - - - - ERGIC and golgi 2 [Source:ZFIN;Acc:ZDB-GENE-040426-1331]
76. naa15b ENSDARG00000030368 535 0.999 - 0.999 - - - - - - - N(alpha)-acetyltransferase 15, NatA auxiliary subunit b [Source:ZFIN;Acc:ZDB-GENE-030131-6031]
77. hoxa5a ENSDARG00000102501 1667 0.999 - 0.999 - - - - - - - homeobox A5a [Source:ZFIN;Acc:ZDB-GENE-000823-9]
78. cnn3b ENSDARG00000029856 4807 0.999 - 0.999 - - - - - - - calponin 3, acidic b [Source:ZFIN;Acc:ZDB-GENE-050522-263]
79. RMDN2 ENSDARG00000078761 717 0.999 - 0.999 - - - - - - - regulator of microtubule dynamics 2 [Source:ZFIN;Acc:ZDB-GENE-111223-1]
80. prkcea ENSDARG00000003008 1118 0.999 - 0.999 - - - - - - - protein kinase C, epsilon a [Source:ZFIN;Acc:ZDB-GENE-030131-8191]
81. ogfr ENSDARG00000037837 1001 0.999 - 0.999 - - - - - - - opioid growth factor receptor [Source:ZFIN;Acc:ZDB-GENE-030131-377]
82. igf1rb ENSDARG00000034434, ENSDARG00000110935 813 0.999 - 0.999 - - - - - - - insulin-like growth factor 1b receptor [Source:ZFIN;Acc:ZDB-GENE-020503-2]
83. tnfaip1 ENSDARG00000041565, ENSDARG00000113688, ENSDARG00000115018 553 0.999 - 0.999 - - - - - - - tumor necrosis factor, alpha-induced protein 1 (endothelial) [Source:ZFIN;Acc:ZDB-GENE-030131-5610]
84. si:ch211-251b21.1 ENSDARG00000007275 15724 0.999 - 0.999 - - - - - - - si:ch211-251b21.1 [Source:ZFIN;Acc:ZDB-GENE-060809-5]
85. sema3gb ENSDARG00000013607 1531 0.999 - 0.999 - - - - - - - sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3Gb [Source:ZFIN;Acc:ZDB-GENE-050513-4]
86. klhl20 ENSDARG00000038801 936 0.999 - 0.999 - - - - - - - kelch-like family member 20 [Source:ZFIN;Acc:ZDB-GENE-040426-1935]
87. anapc11 ENSDARG00000102531, ENSDARG00000116987 1769 0.999 - 0.999 - - - - - - - APC11 anaphase promoting complex subunit 11 homolog (yeast) [Source:ZFIN;Acc:ZDB-GENE-061013-383]
88. stim1a ENSDARG00000060723 1200 0.999 - 0.999 - - - - - - - stromal interaction molecule 1a [Source:ZFIN;Acc:ZDB-GENE-060503-914]
89. uqcrfs1 ENSDARG00000007745 4654 0.999 - 0.999 - - - - - - - ubiquinol-cytochrome c reductase, Rieske iron-sulfur polypeptide 1 [Source:ZFIN;Acc:ZDB-GENE-040426-2060]
90. ddr2l ENSDARG00000103830 1921 0.998 - 0.998 - - - - - - - discoidin domain receptor family, member 2, like [Source:ZFIN;Acc:ZDB-GENE-041210-162]
91. arl2 ENSDARG00000069496, ENSDARG00000112191 1389 0.998 - 0.998 - - - - - - - ADP-ribosylation factor-like 2 [Source:ZFIN;Acc:ZDB-GENE-041010-19]
92. PPFIBP1_1 PPFIBP1_1 2256 0.998 - 0.998 - - - - - - -
93. PRKAG2 PRKAG2 688 0.997 - 0.997 - - - - - - -
94. ccng2 ENSDARG00000017602 3141 0.997 - 0.997 - - - - - - - cyclin G2 [Source:ZFIN;Acc:ZDB-GENE-021016-1]
95. calm2b 3890 0.997 - 0.997 - - - - - - - calmodulin 2b, (phosphorylase kinase, delta)
96. mmp11b ENSDARG00000016718 1136 0.997 - 0.997 - - - - - - - matrix metallopeptidase 11b [Source:ZFIN;Acc:ZDB-GENE-070817-2]
97. txndc9 ENSDARG00000069853, ENSDARG00000110688 1519 0.997 - 0.997 - - - - - - - thioredoxin domain containing 9 [Source:ZFIN;Acc:ZDB-GENE-030131-8569]
98. cylda ENSDARG00000060058 768 0.997 - 0.997 - - - - - - - cylindromatosis (turban tumor syndrome), a [Source:ZFIN;Acc:ZDB-GENE-061108-2]
99. fam192a ENSDARG00000041631 4113 0.997 - 0.997 - - - - - - - family with sequence similarity 192, member A [Source:ZFIN;Acc:ZDB-GENE-030131-6692]
100. cenpe ENSDARG00000063385 4428 0.996 - 0.996 - - - - - - - centromere protein E [Source:ZFIN;Acc:ZDB-GENE-060929-860]

There are 1187 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA