Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

Zebrafish data search


search
Exact
Search
Limit to:

{{libname.name}} 

Results for rab5if

Gene Name Gene ID Reads Annotation
rab5if ENSDARG00000074790 8807 RAB5 interacting factor [Source:ZFIN;Acc:ZDB-GENE-030131-5938]










Genes with expression patterns similar to rab5if

Nr. Gene Name Gene ID Reads Σ scores 28hpf trunk1 28hpf trunk2 28hpf whole1 28hpf whole2 28hpf whole3 PA 40hpf trunk1 40hpf trunk2 40hpf whole embryo1 40hpf whole embryo2 Annotation
1. rab5if ENSDARG00000074790 8807 9 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 RAB5 interacting factor [Source:ZFIN;Acc:ZDB-GENE-030131-5938]
2. pcnp ENSDARG00000037713 2754 3.363 - - 0.822 - - - 0.784 0.866 0.891 PEST proteolytic signal containing nuclear protein [Source:ZFIN;Acc:ZDB-GENE-041010-130]
3. mibp2 ENSDARG00000101844 17444 2.991 - - - 0.768 - 0.747 0.736 0.740 - muscle-specific beta 1 integrin binding protein 2 [Source:ZFIN;Acc:ZDB-GENE-031113-14]
4. qars ENSDARG00000010316 2715 2.613 - 0.850 - - - - - 0.832 0.931 glutaminyl-tRNA synthetase [Source:ZFIN;Acc:ZDB-GENE-040426-1011]
5. lsm6 ENSDARG00000036995 4377 2.481 - - 0.813 - - - 0.854 - 0.814 LSM6 homolog, U6 small nuclear RNA and mRNA degradation associated [Source:ZFIN;Acc:ZDB-GENE-040625-50]
6. capzb ENSDARG00000100252 10444 2.456 - - - - - 0.749 0.876 - 0.831 capping actin protein of muscle Z-line subunit beta [Source:ZFIN;Acc:ZDB-GENE-030131-7023]
7. lrpprc ENSDARG00000043970 3847 2.449 - 0.815 - - - - 0.731 - 0.903 leucine-rich pentatricopeptide repeat containing [Source:ZFIN;Acc:ZDB-GENE-030131-7887]
8. MRPS12_1 MRPS12_1 2714 2.441 - 0.774 - - - - 0.754 - 0.913
9. si:dkey-13i19.8 ENSDARG00000093058 4617 2.43 0.763 0.806 - - - - - - 0.861 si:dkey-13i19.8 [Source:ZFIN;Acc:ZDB-GENE-041210-156]
10. acsl1 acsl1 4216 2.425 - - - - - 0.728 0.893 0.804 -
11. minos1 ENSDARG00000101619 5273 2.424 - 0.806 0.821 - - - 0.797 - - mitochondrial inner membrane organizing system 1 [Source:ZFIN;Acc:ZDB-GENE-060825-325]
12. cct8 ENSDARG00000008243 6843 2.413 - 0.784 - - - 0.733 0.896 - - chaperonin containing TCP1, subunit 8 (theta) [Source:ZFIN;Acc:ZDB-GENE-040426-876]
13. atp5g3a 9539 2.388 0.839 - 0.710 - - - 0.839 - - ATP synthase, H+ transporting, mitochondrial Fo complex, subunit C3 (subunit 9), genome duplicate a
14. myod1 ENSDARG00000030110 6019 2.377 - - - 0.708 - 0.749 0.920 - - myogenic differentiation 1 [Source:ZFIN;Acc:ZDB-GENE-980526-561]
15. slc7a6os ENSDARG00000010596 1599 2.376 - 0.805 - - - - 0.772 0.799 - solute carrier family 7, member 6 opposite strand [Source:ZFIN;Acc:ZDB-GENE-041114-32]
16. ecsit ENSDARG00000062834 896 2.374 - 0.760 - - - 0.720 - - 0.894 ECSIT signalling integrator [Source:ZFIN;Acc:ZDB-GENE-030131-1332]
17. pcmt ENSDARG00000015201 5132 2.372 0.718 0.798 - - - - 0.856 - - protein-L-isoaspartate (D-aspartate) O-methyltransferase [Source:ZFIN;Acc:ZDB-GENE-990415-134]
18. ndufs1 ENSDARG00000028546 5795 2.362 - - - - - 0.728 0.841 - 0.793 NADH:ubiquinone oxidoreductase core subunit S1 [Source:ZFIN;Acc:ZDB-GENE-030131-478]
19. pdcd4a ENSDARG00000021702 7293 2.355 - 0.748 - - - 0.758 0.849 - - programmed cell death 4a [Source:ZFIN;Acc:ZDB-GENE-040426-1920]
20. BDP1 BDP1 2514 2.343 - 0.746 - - - - 0.767 0.830 -
21. rhebl1 ENSDARG00000039162 3966 2.34 - 0.707 - - - - 0.709 - 0.924 Ras homolog, mTORC1 binding like 1 [Source:ZFIN;Acc:ZDB-GENE-000510-1]
22. mrps35 ENSDARG00000038456 1514 2.339 - 0.806 - - - 0.759 0.774 - - mitochondrial ribosomal protein S35 [Source:ZFIN;Acc:ZDB-GENE-050809-131]
23. CR847973.1 ENSDARG00000115516 8754 2.339 - 0.758 - - - 0.703 0.878 - -
24. rwdd1 ENSDARG00000015930 2380 2.335 0.705 0.797 - - - - 0.833 - - RWD domain containing 1 [Source:ZFIN;Acc:ZDB-GENE-040718-270]
25. ilk ENSDARG00000056964 6686 2.333 - 0.810 - - - 0.742 0.781 - - integrin-linked kinase [Source:ZFIN;Acc:ZDB-GENE-040426-1435]
26. LYRM7 ENSDARG00000079815, ENSDARG00000111617, ENSDARG00000114632 2283 2.326 - 0.769 - - - 0.775 0.782 - - LYR motif containing 7 [Source:ZFIN;Acc:ZDB-GENE-070615-32]
27. pebp1 ENSDARG00000042069 6651 2.32 - 0.723 - - - - 0.768 0.829 - phosphatidylethanolamine binding protein 1 [Source:ZFIN;Acc:ZDB-GENE-040426-2621]
28. cap2 ENSDARG00000104478 3266 2.314 - 0.752 - - - 0.702 0.860 - - CAP, adenylate cyclase-associated protein, 2 (yeast) [Source:ZFIN;Acc:ZDB-GENE-040426-1758]
29. pabpn1 ENSDARG00000045373 4876 2.303 - 0.710 0.804 - - - - 0.789 - poly(A) binding protein, nuclear 1 [Source:ZFIN;Acc:ZDB-GENE-040426-2401]
30. cyc1 ENSDARG00000038075 16699 2.299 - - - - - 0.751 0.820 - 0.728 cytochrome c-1 [Source:ZFIN;Acc:ZDB-GENE-031105-2]
31. tomm70a ENSDARG00000029639, ENSDARG00000112054 7715 2.286 0.711 - 0.719 - - - - - 0.856 translocase of outer mitochondrial membrane 70 homolog A (S. cerevisiae) [Source:ZFIN;Acc:ZDB-GENE-030131-8173]
32. kpnb3 ENSDARG00000040245 7967 2.264 - 0.837 - - - - 0.726 - 0.701 karyopherin (importin) beta 3 [Source:ZFIN;Acc:ZDB-GENE-030424-2]
33. smtnl1 ENSDARG00000041257 7410 2.262 - - 0.716 - - 0.706 0.840 - - smoothelin-like 1 [Source:ZFIN;Acc:ZDB-GENE-050306-23]
34. tnnt2d ENSDARG00000002988 7590 2.241 - 0.732 - - - 0.702 0.807 - - troponin T2d, cardiac [Source:ZFIN;Acc:ZDB-GENE-050626-97]
35. cmip ENSDARG00000062933 4521 2.214 - 0.805 0.707 - - 0.702 - - - c-Maf inducing protein [Source:ZFIN;Acc:ZDB-GENE-050419-50]
36. rps25 ENSDARG00000041811 52182 2.208 0.701 - - - - 0.728 0.779 - - ribosomal protein S25 [Source:ZFIN;Acc:ZDB-GENE-040426-1788]
37. ndufa12 ENSDARG00000042469, ENSDARG00000116793 3843 1.795 - - - - - - 0.885 - 0.910 NADH:ubiquinone oxidoreductase subunit A12 [Source:ZFIN;Acc:ZDB-GENE-050828-1]
38. cox7c ENSDARG00000104537 12169 1.79 - - - - - - 0.901 - 0.889 cytochrome c oxidase subunit 7C [Source:ZFIN;Acc:ZDB-GENE-030131-8062]
39. dgcr2 ENSDARG00000042962, ENSDARG00000109230 2339 1.752 - - - - - - - 0.831 0.921 DiGeorge syndrome critical region gene 2 [Source:ZFIN;Acc:ZDB-GENE-040718-404]
40. aco2 ENSDARG00000007294, ENSDARG00000111879 5162 1.752 - - - - - - 0.900 - 0.852 aconitase 2, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-030131-1390]
41. hspa4a ENSDARG00000004754 3439 1.748 - - - - - - 0.833 - 0.915 heat shock protein 4a [Source:ZFIN;Acc:ZDB-GENE-040426-2832]
42. anxa6 ENSDARG00000013335 3588 1.748 - - - - - - 0.866 - 0.882 annexin A6 [Source:ZFIN;Acc:ZDB-GENE-030707-3]
43. sox6 ENSDARG00000015536 7728 1.744 - - 0.871 - - - 0.873 - - SRY (sex determining region Y)-box 6 [Source:ZFIN;Acc:ZDB-GENE-081120-6]
44. eya1 ENSDARG00000014259, ENSDARG00000116267 5111 1.742 - 0.832 - - - - 0.910 - - EYA transcriptional coactivator and phosphatase 1 [Source:ZFIN;Acc:ZDB-GENE-990712-18]
45. snoU83B snoU83B 4666 1.739 - - - - - - 0.870 - 0.869
46. capza1b ENSDARG00000056090, ENSDARG00000109842, ENSDARG00000110402 12199 1.736 - 0.843 - - - - 0.893 - - capping actin protein of muscle Z-line subunit alpha 1b [Source:ZFIN;Acc:ZDB-GENE-031002-24]
47. znf106a ENSDARG00000016651 6049 1.735 - 0.824 - - - - 0.911 - - zinc finger protein 106a [Source:ZFIN;Acc:ZDB-GENE-040718-21]
48. sh3rf1 ENSDARG00000070470 1463 1.733 - 0.809 - - - - - - 0.924 SH3 domain containing ring finger 1 [Source:ZFIN;Acc:ZDB-GENE-030131-6288]
49. ndufab1b ENSDARG00000014915 12796 1.728 - 0.918 - - - - 0.810 - - NADH:ubiquinone oxidoreductase subunit AB1b [Source:ZFIN;Acc:ZDB-GENE-030131-4437]
50. C22H19orf70 C22H19orf70 4393 1.728 - - - - - 0.861 0.867 - -
51. AIFM2 ENSDARG00000077549 1419 1.723 - - - - - - - 0.810 0.913 apoptosis-inducing factor, mitochondrion-associated, 2 [Source:ZFIN;Acc:ZDB-GENE-050506-76]
52. cdv3 ENSDARG00000023028 12380 1.722 - - - - - - 0.903 0.819 - carnitine deficiency-associated gene expressed in ventricle 3 [Source:ZFIN;Acc:ZDB-GENE-030131-6034]
53. gins1 ENSDARG00000007624 1421 1.718 - - - - - - - 0.808 0.910 GINS complex subunit 1 (Psf1 homolog) [Source:ZFIN;Acc:ZDB-GENE-041010-184]
54. EHBP1L1 EHBP1L1 2500 1.716 - 0.825 - - - - 0.891 - -
55. fbp2 ENSDARG00000012366 1042 1.715 - - - - - - 0.903 0.812 - fructose-1,6-bisphosphatase 2 [Source:ZFIN;Acc:ZDB-GENE-040822-23]
56. kcnma1a ENSDARG00000079840 2584 1.713 - 0.782 - - - - 0.931 - - potassium large conductance calcium-activated channel, subfamily M, alpha member 1a [Source:ZFIN;Acc:ZDB-GENE-070202-9]
57. tufm ENSDARG00000104173 9292 1.711 - - - - - - 0.842 - 0.869 Tu translation elongation factor, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-050320-73]
58. timm8b ENSDARG00000055708 7291 1.711 - 0.824 - - - - 0.887 - - translocase of inner mitochondrial membrane 8 homolog B (yeast) [Source:ZFIN;Acc:ZDB-GENE-031019-1]
59. cox17 ENSDARG00000069920, ENSDARG00000114117 5591 1.709 - - - - - 0.809 0.900 - - cytochrome c oxidase copper chaperone COX17 [Source:ZFIN;Acc:ZDB-GENE-040912-91]
60. ndufv2 ENSDARG00000013044 3758 1.708 - - - - - - 0.829 - 0.879 NADH:ubiquinone oxidoreductase core subunit V2 [Source:ZFIN;Acc:ZDB-GENE-040426-1713]
61. sly1 sly1 2403 1.706 - - - - - - - 0.823 0.883
62. cox6c ENSDARG00000038577 16845 1.705 - - - - - 0.844 0.861 - - cytochrome c oxidase subunit 6C [Source:ZFIN;Acc:ZDB-GENE-040724-95]
63. myf6 ENSDARG00000029830 1911 1.703 - 0.784 - - - - 0.919 - - myogenic factor 6 [Source:ZFIN;Acc:ZDB-GENE-040309-2]
64. pes ENSDARG00000018902 3286 1.702 - 0.838 - - - - - 0.864 - pescadillo [Source:ZFIN;Acc:ZDB-GENE-990415-206]
65. pbxip1a ENSDARG00000071015 4960 1.697 - 0.828 - - - - 0.869 - - pre-B-cell leukemia homeobox interacting protein 1a [Source:ZFIN;Acc:ZDB-GENE-060503-871]
66. lrrc20 ENSDARG00000105018 1970 1.696 - 0.797 - - - - 0.899 - - leucine rich repeat containing 20 [Source:ZFIN;Acc:ZDB-GENE-041114-49]
67. slc25a12 ENSDARG00000102362 2773 1.695 - 0.822 - - - - 0.873 - - solute carrier family 25 (aspartate/glutamate carrier), member 12 [Source:ZFIN;Acc:ZDB-GENE-031006-11]
68. ube2a ENSDARG00000098466 12765 1.695 - - - - - - 0.825 0.870 - ubiquitin-conjugating enzyme E2A (RAD6 homolog) [Source:ZFIN;Acc:ZDB-GENE-030616-72]
69. gmpr ENSDARG00000016160 1537 1.693 - - - - - 0.781 0.912 - - guanosine monophosphate reductase [Source:ZFIN;Acc:ZDB-GENE-050522-48]
70. pygmb ENSDARG00000013317 5454 1.691 - 0.798 - - - - 0.893 - - phosphorylase, glycogen, muscle b [Source:ZFIN;Acc:ZDB-GENE-040426-1206]
71. mybphb ENSDARG00000003081 5208 1.69 - 0.795 - - - - 0.895 - - myosin binding protein Hb [Source:ZFIN;Acc:ZDB-GENE-030131-9794]
72. txn2 ENSDARG00000034777 4071 1.69 - 0.812 - - - - 0.878 - - thioredoxin 2 [Source:ZFIN;Acc:ZDB-GENE-040426-1795]
73. DNAJA4 ENSDARG00000051762 5657 1.685 - 0.822 - - - - 0.863 - - DnaJ heat shock protein family (Hsp40) member A4 [Source:HGNC Symbol;Acc:HGNC:14885]
74. nmrk2 ENSDARG00000067848 10293 1.685 - 0.794 - - - - 0.891 - - nicotinamide riboside kinase 2 [Source:ZFIN;Acc:ZDB-GENE-040912-44]
75. WDR77 2463 1.684 - 0.839 - - - - - 0.845 - WD repeat domain 77
76. nudt3a ENSDARG00000016256 2713 1.678 - 0.822 - - - - 0.856 - - nudix (nucleoside diphosphate linked moiety X)-type motif 3a [Source:ZFIN;Acc:ZDB-GENE-040426-792]
77. EIF4G1_1 EIF4G1_1 3721 1.674 - 0.799 - - - - - - 0.875
78. hapln1a ENSDARG00000089769 12334 1.673 - 0.804 - - - - 0.869 - - hyaluronan and proteoglycan link protein 1a [Source:ZFIN;Acc:ZDB-GENE-050302-175]
79. mrpl37 ENSDARG00000062916 1600 1.673 - 0.823 - - - - 0.850 - - mitochondrial ribosomal protein L37 [Source:ZFIN;Acc:ZDB-GENE-050309-20]
80. ntmt1 ENSDARG00000022399 5779 1.673 - 0.794 - - - - 0.879 - - N-terminal Xaa-Pro-Lys N-methyltransferase 1 [Source:ZFIN;Acc:ZDB-GENE-040426-2055]
81. thoc7 ENSDARG00000015394 3824 1.67 - 0.773 - - - - - - 0.897 THO complex 7 [Source:ZFIN;Acc:ZDB-GENE-040801-17]
82. klhl40a ENSDARG00000039052 2537 1.668 - 0.765 - - - - 0.903 - - kelch-like family member 40a [Source:ZFIN;Acc:ZDB-GENE-050916-1]
83. MYOT ENSDARG00000076312 1791 1.666 - 0.821 - - - - 0.845 - - myotilin [Source:ZFIN;Acc:ZDB-GENE-110411-129]
84. zgc:158296 ENSDARG00000070923 3935 1.666 - 0.762 - - - - 0.904 - - zgc:158296 [Source:ZFIN;Acc:ZDB-GENE-070112-1272]
85. alg3 ENSDARG00000053155 1843 1.665 - 0.867 - - - - 0.798 - - asparagine-linked glycosylation 3 (alpha-1,3-mannosyltransferase) [Source:ZFIN;Acc:ZDB-GENE-050522-334]
86. ryr1b ENSDARG00000023797 5693 1.665 - 0.769 - - - - 0.896 - - ryanodine receptor 1b (skeletal) [Source:ZFIN;Acc:ZDB-GENE-070705-417]
87. znf648 ENSDARG00000104823 1918 1.661 - 0.769 - - - - 0.892 - - zinc finger protein 648 [Source:ZFIN;Acc:ZDB-GENE-120215-149]
88. usp5_1 ENSDARG00000014517, ENSDARG00000114598 5050 1.659 - 0.761 - - - - 0.898 - - ubiquitin specific peptidase 5 (isopeptidase T) [Source:ZFIN;Acc:ZDB-GENE-040426-2584]
89. wnk1b ENSDARG00000039392 3587 1.659 - 0.748 - - - - - - 0.911 WNK lysine deficient protein kinase 1b [Source:ZFIN;Acc:ZDB-GENE-030131-2656]
90. hsp90aa1.1 ENSDARG00000010478 47784 1.659 - - - - - 0.760 0.899 - - heat shock protein 90, alpha (cytosolic), class A member 1, tandem duplicate 1 [Source:ZFIN;Acc:ZDB-GENE-990415-94]
91. atp1a2a ENSDARG00000010472, ENSDARG00000111818, ENSDARG00000115733 6341 1.658 - 0.739 - - - - 0.919 - - ATPase Na+/K+ transporting subunit alpha 2 [Source:ZFIN;Acc:ZDB-GENE-001212-6]
92. PTPLA PTPLA 4044 1.658 - 0.785 - - - - 0.873 - -
93. nmt1a ENSDARG00000052966 5918 1.657 - 0.840 - - - - - 0.817 - N-myristoyltransferase 1a [Source:ZFIN;Acc:ZDB-GENE-050522-477]
94. tead3a ENSDARG00000074321 2240 1.656 - - - - - - 0.729 - 0.927 TEA domain family member 3 a [Source:ZFIN;Acc:ZDB-GENE-031112-10]
95. naa15a ENSDARG00000003213 5889 1.655 - - - - - 0.778 0.877 - - N(alpha)-acetyltransferase 15, NatA auxiliary subunit a [Source:ZFIN;Acc:ZDB-GENE-030131-2392]
96. stac3 ENSDARG00000098883 1765 1.655 - 0.744 - - - - 0.911 - - SH3 and cysteine rich domain 3 [Source:ZFIN;Acc:ZDB-GENE-040801-248]
97. gypc ENSDARG00000041546 1487 1.655 - 0.782 - - - - 0.873 - - glycophorin C (Gerbich blood group) [Source:ZFIN;Acc:ZDB-GENE-030131-7930]
98. PHB2 PHB2 3755 1.654 - 0.793 - - - - 0.861 - -
99. txlnbb ENSDARG00000076241 6396 1.654 - 0.770 - - - - 0.884 - - taxilin beta b [Source:ZFIN;Acc:ZDB-GENE-070424-77]
100. tomm40l ENSDARG00000036721 1714 1.652 - 0.792 - - - - 0.860 - - translocase of outer mitochondrial membrane 40 homolog, like [Source:ZFIN;Acc:ZDB-GENE-040426-2319]

There are 1949 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA