Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Results for prpf40a

Gene Name Gene ID Reads Annotation
prpf40a ENSDARG00000058467 6565 PRP40 pre-mRNA processing factor 40 homolog A [Source:ZFIN;Acc:ZDB-GENE-030131-274]










Genes with expression patterns similar to prpf40a

Nr. Gene Name Gene ID Reads Σ scores 28hpf trunk1 28hpf trunk2 28hpf whole1 28hpf whole2 28hpf whole3 PA 40hpf trunk1 40hpf trunk2 40hpf whole embryo1 40hpf whole embryo2 Annotation
1. prpf40a ENSDARG00000058467 6565 9 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 PRP40 pre-mRNA processing factor 40 homolog A [Source:ZFIN;Acc:ZDB-GENE-030131-274]
2. sumo3a ENSDARG00000028119 13447 3.177 - 0.787 - - - 0.731 0.828 - 0.831 small ubiquitin-like modifier 3a [Source:ZFIN;Acc:ZDB-GENE-040426-2133]
3. peli1b ENSDARG00000044083, ENSDARG00000112797 3801 3.154 - - - - 0.886 0.739 0.712 - 0.817 pellino E3 ubiquitin protein ligase 1b [Source:ZFIN;Acc:ZDB-GENE-061027-372]
4. khsrp ENSDARG00000026489 15738 3.119 - 0.794 - - - 0.778 0.803 - 0.744 KH-type splicing regulatory protein [Source:ZFIN;Acc:ZDB-GENE-030131-4357]
5. zgc:101846 15202 2.593 - 0.893 0.881 - - - - - 0.819 zgc:101846
6. smc1al ENSDARG00000058203 8838 2.583 - - - 0.995 - 0.771 - - 0.817 structural maintenance of chromosomes 1A, like [Source:ZFIN;Acc:ZDB-GENE-040426-57]
7. hmgb1b ENSDARG00000030479 10398 2.582 - - - 0.984 0.864 - 0.734 - - high mobility group box 1b [Source:ZFIN;Acc:ZDB-GENE-030131-8480]
8. SERBP1 SERBP1 9276 2.552 - - - 0.994 - 0.713 0.845 - -
9. mcm2 ENSDARG00000102798 8148 2.504 - 0.815 - 0.898 - - - - 0.791 minichromosome maintenance complex component 2 [Source:ZFIN;Acc:ZDB-GENE-020419-24]
10. ezh2 ENSDARG00000010571 3273 2.493 - - - - 0.906 - 0.785 - 0.802 enhancer of zeste 2 polycomb repressive complex 2 subunit [Source:ZFIN;Acc:ZDB-GENE-041111-259]
11. tox ENSDARG00000032317 9126 2.475 - - - 0.992 - - 0.709 - 0.774 thymocyte selection-associated high mobility group box [Source:ZFIN;Acc:ZDB-GENE-070912-181]
12. TAF15 ENSDARG00000070019 5102 2.392 - - - - - 0.766 0.775 - 0.851 TAF15 RNA polymerase II, TATA box binding protein (TBP)-associated factor [Source:ZFIN;Acc:ZDB-GENE-061215-102]
13. rbm4.3 ENSDARG00000022129 28571 2.364 - - - 0.920 - 0.738 - 0.706 - RNA binding motif protein 4.3 [Source:ZFIN;Acc:ZDB-GENE-040426-1938]
14. FAM168B ENSDARG00000101733, ENSDARG00000113953, ENSDARG00000115746 2175 2.342 - - - - - 0.791 0.749 - 0.802 family with sequence similarity 168, member B [Source:ZFIN;Acc:ZDB-GENE-060929-180]
15. hnrnpub ENSDARG00000004735 16496 2.288 - 0.718 - - - - 0.709 - 0.861 heterogeneous nuclear ribonucleoprotein Ub [Source:ZFIN;Acc:ZDB-GENE-030131-6422]
16. ZFHX3 ENSDARG00000103057 7759 2.285 - - - - 0.823 0.730 0.732 - - zinc finger homeobox 3 [Source:ZFIN;Acc:ZDB-GENE-030131-7577]
17. marcksa ENSDARG00000004049 2518 2.265 - - - - - 0.720 0.712 - 0.833 myristoylated alanine-rich protein kinase C substrate a [Source:ZFIN;Acc:ZDB-GENE-050522-145]
18. hmgb3a ENSDARG00000056725 15668 2.247 - - - - - 0.752 0.738 - 0.757 high mobility group box 3a [Source:ZFIN;Acc:ZDB-GENE-050428-1]
19. jarid2b ENSDARG00000062268 2206 2.159 - - - - - 0.731 0.718 - 0.710 jumonji, AT rich interactive domain 2b [Source:ZFIN;Acc:ZDB-GENE-060503-246]
20. brd8 ENSDARG00000025071 2605 1.811 - - 0.917 - 0.894 - - - - bromodomain containing 8 [Source:ZFIN;Acc:ZDB-GENE-030722-10]
21. serbp1a ENSDARG00000074242 10818 1.806 - - 0.811 0.995 - - - - - SERPINE1 mRNA binding protein 1a [Source:ZFIN;Acc:ZDB-GENE-030131-7389]
22. eif2s3 ENSDARG00000008292 17051 1.786 - - - 0.980 0.806 - - - - eukaryotic translation initiation factor 2, subunit 3 gamma [Source:ZFIN;Acc:ZDB-GENE-030131-5552]
23. cnot1 ENSDARG00000004174, ENSDARG00000109411 4625 1.776 - - - 0.996 - - - - 0.780 CCR4-NOT transcription complex, subunit 1 [Source:ZFIN;Acc:ZDB-GENE-040915-1]
24. pdap1a ENSDARG00000092546, ENSDARG00000116115 7617 1.774 - - - 0.995 - - - - 0.779 pdgfa associated protein 1a [Source:ZFIN;Acc:ZDB-GENE-030131-1693]
25. tuba1c ENSDARG00000055216 8384 1.757 - - - 0.992 - - - - 0.765 tubulin, alpha 1c [Source:ZFIN;Acc:ZDB-GENE-061114-1]
26. col18a1 col18a1 20555 1.756 - - 0.788 0.968 - - - - -
27. gap43 ENSDARG00000099744 4114 1.755 - - - 0.996 - - - - 0.759 growth associated protein 43 [Source:ZFIN;Acc:ZDB-GENE-990415-87]
28. blcap ENSDARG00000052073 8646 1.739 - - 0.745 0.994 - - - - - bladder cancer associated protein [Source:ZFIN;Acc:ZDB-GENE-000330-7]
29. zgc:77262 ENSDARG00000044545 5563 1.739 - - - - 0.895 - 0.844 - - zgc:77262 [Source:ZFIN;Acc:ZDB-GENE-040426-1811]
30. pip5k2 pip5k2 5743 1.721 - 0.810 0.911 - - - - - -
31. srsf6b ENSDARG00000016783 9926 1.71 - - 0.893 - - - 0.817 - - serine/arginine-rich splicing factor 6b [Source:ZFIN;Acc:ZDB-GENE-041219-1]
32. C3H19orf43 C3H19orf43 2961 1.701 - - - 0.996 - 0.705 - - -
33. rcn1 ENSDARG00000070006 8455 1.695 - - 0.876 - 0.819 - - - - reticulocalbin 1, EF-hand calcium binding domain [Source:ZFIN;Acc:ZDB-GENE-080225-33]
34. sox9b ENSDARG00000043923 5375 1.695 - - 0.863 - - - - - 0.832 SRY (sex determining region Y)-box 9b [Source:ZFIN;Acc:ZDB-GENE-001103-2]
35. dla ENSDARG00000010791 9281 1.693 - - - - 0.903 - - - 0.790 deltaA [Source:ZFIN;Acc:ZDB-GENE-980526-29]
36. mcrs1 ENSDARG00000020840 3232 1.685 - 0.810 - - 0.875 - - - - microspherule protein 1 [Source:ZFIN;Acc:ZDB-GENE-040426-2434]
37. btg2 ENSDARG00000020298 6616 1.683 - - 0.901 - - 0.782 - - - B-cell translocation gene 2 [Source:ZFIN;Acc:ZDB-GENE-000210-15]
38. rcc2 ENSDARG00000011510, ENSDARG00000115981 7997 1.677 - - 0.860 - 0.817 - - - - regulator of chromosome condensation 2 [Source:ZFIN;Acc:ZDB-GENE-040426-2213]
39. si:ch211-161h7.4 ENSDARG00000087238 4399 1.676 0.764 - - - 0.912 - - - - si:ch211-161h7.4 [Source:ZFIN;Acc:ZDB-GENE-091118-108]
40. kat2a ENSDARG00000104734 802 1.673 - 0.824 - - 0.849 - - - - K(lysine) acetyltransferase 2A [Source:ZFIN;Acc:ZDB-GENE-080403-11]
41. sfpq ENSDARG00000011564, ENSDARG00000115611 15626 1.669 - - - - - - 0.808 - 0.861 splicing factor proline/glutamine-rich [Source:ZFIN;Acc:ZDB-GENE-040426-2452]
42. ythdc1 ENSDARG00000051953, ENSDARG00000114892 4752 1.663 - - - - 0.896 - 0.767 - - YTH domain containing 1 [Source:ZFIN;Acc:ZDB-GENE-041114-114]
43. pbx2 ENSDARG00000019717 6892 1.659 - 0.810 - - 0.849 - - - - pre-B-cell leukemia homeobox 2 [Source:ZFIN;Acc:ZDB-GENE-000405-5]
44. matr3l1.1_1 ENSDARG00000000394, ENSDARG00000001162 1860 1.658 - - 0.917 - - - - - 0.741 matrin 3-like 1.1 [Source:ZFIN;Acc:ZDB-GENE-030616-40]
45. ranbp9 ENSDARG00000061048 2687 1.655 - - - - 0.877 - 0.778 - - RAN binding protein 9 [Source:ZFIN;Acc:ZDB-GENE-021030-5]
46. ints1 ENSDARG00000100419 1958 1.653 - - - - 0.893 - - - 0.760 integrator complex subunit 1 [Source:ZFIN;Acc:ZDB-GENE-030131-6523]
47. zgc:92664 ENSDARG00000015161 1651 1.652 - - - - 0.907 - - 0.745 - zgc:92664 [Source:ZFIN;Acc:ZDB-GENE-040718-119]
48. lmnb2 ENSDARG00000101624 11304 1.652 - - - - 0.913 - - - 0.739 lamin B2 [Source:ZFIN;Acc:ZDB-GENE-990630-13]
49. SNRPG ENSDARG00000099667 18697 1.651 - - 0.800 - - - - - 0.851 small nuclear ribonucleoprotein polypeptide G [Source:ZFIN;Acc:ZDB-GENE-040912-105]
50. arpp19b ENSDARG00000039880 4823 1.643 - - - - 0.828 - - - 0.815 cAMP-regulated phosphoprotein 19b [Source:ZFIN;Acc:ZDB-GENE-040426-930]
51. cnn3b ENSDARG00000029856 4807 1.64 - - - - 0.908 - 0.732 - - calponin 3, acidic b [Source:ZFIN;Acc:ZDB-GENE-050522-263]
52. mapre1b ENSDARG00000002659 9119 1.64 - - - - 0.885 - - - 0.755 microtubule-associated protein, RP/EB family, member 1b [Source:ZFIN;Acc:ZDB-GENE-040426-2256]
53. emc2 ENSDARG00000003308, ENSDARG00000114541 7141 1.639 - - - - 0.865 - - - 0.774 ER membrane protein complex subunit 2 [Source:ZFIN;Acc:ZDB-GENE-040625-82]
54. ddx19 ENSDARG00000005699 4602 1.636 - 0.807 - - - - - - 0.829 DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 19 (DBP5 homolog, yeast) [Source:ZFIN;Acc:ZDB-GENE-020419-30]
55. ep300b ENSDARG00000061108 5173 1.636 - - - - 0.800 0.836 - - - E1A binding protein p300 b [Source:ZFIN;Acc:ZDB-GENE-080403-15]
56. rnmt ENSDARG00000070553 1743 1.628 - - 0.916 - - - - - 0.712 RNA (guanine-7-) methyltransferase [Source:ZFIN;Acc:ZDB-GENE-041008-25]
57. uba1 ENSDARG00000037559 11579 1.627 - - - - - 0.791 0.836 - - ubiquitin-like modifier activating enzyme 1 [Source:ZFIN;Acc:ZDB-GENE-040426-2009]
58. smarce1 ENSDARG00000016871 9628 1.626 - - - - 0.800 - 0.826 - - SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1 [Source:ZFIN;Acc:ZDB-GENE-030131-967]
59. lppr3a lppr3a 1294 1.624 - - - - - 0.818 - - 0.806
60. HIST1H4C HIST1H4C 6190 1.622 - - - - 0.891 - - - 0.731
61. wdr33 ENSDARG00000018272 4076 1.62 - - - - 0.848 - - - 0.772 WD repeat domain 33 [Source:ZFIN;Acc:ZDB-GENE-040924-3]
62. AL954137.2 ENSDARG00000114408 104506 1.62 - 0.890 - - - - - - 0.730
63. wfikkn2a ENSDARG00000013460 859 1.617 - - - - 0.856 - - - 0.761 info WAP, follistatin/kazal, immunoglobulin, kunitz and netrin domain containing 2a [Source:ZFIN;Acc:ZDB-GENE-120914-1]
64. arid1ab ENSDARG00000101891 1722 1.617 - - - - 0.898 - - - 0.719 AT rich interactive domain 1Ab (SWI-like) [Source:ZFIN;Acc:ZDB-GENE-030131-5725]
65. gpr98 gpr98 717 1.616 - - - - 0.868 - - - 0.748
66. tdg tdg 3269 1.615 - - - - 0.897 - - 0.718 -
67. sepw2a 8597 1.615 - - 0.900 - - 0.715 - - - selenoprotein W, 2a
68. tnks tnks 1695 1.612 - - - - 0.828 0.784 - - -
69. tcea1 ENSDARG00000003531 2912 1.609 - - - - 0.872 - - - 0.737 transcription elongation factor A (SII), 1 [Source:ZFIN;Acc:ZDB-GENE-030131-8049]
70. rps29 ENSDARG00000041232 71334 1.607 - - 0.725 0.882 - - - - - ribosomal protein S29 [Source:ZFIN;Acc:ZDB-GENE-040622-5]
71. ewsr1a ENSDARG00000020258, ENSDARG00000113252 11221 1.606 - - - - - - 0.724 - 0.882 EWS RNA-binding protein 1a [Source:ZFIN;Acc:ZDB-GENE-030131-2317]
72. kmt2a ENSDARG00000004537 2169 1.605 - - - - - 0.806 - - 0.799 lysine (K)-specific methyltransferase 2A [Source:ZFIN;Acc:ZDB-GENE-080521-3]
73. hdac1 ENSDARG00000015427 19804 1.603 - - - - - 0.774 - - 0.829 histone deacetylase 1 [Source:ZFIN;Acc:ZDB-GENE-020419-32]
74. ccnb1 ENSDARG00000051923 3226 1.601 - - - - 0.882 - - - 0.719 cyclin B1 [Source:ZFIN;Acc:ZDB-GENE-000406-10]
75. ak2 ENSDARG00000005926 7598 1.599 - 0.727 - - 0.872 - - - - adenylate kinase 2 [Source:ZFIN;Acc:ZDB-GENE-030131-512]
76. sri ENSDARG00000058593 13152 1.597 - - 0.888 - 0.709 - - - - sorcin [Source:ZFIN;Acc:ZDB-GENE-040426-1356]
77. dpf2l ENSDARG00000037291, ENSDARG00000112198 2353 1.592 - - - - - - 0.796 - 0.796 D4, zinc and double PHD fingers family 2, like [Source:ZFIN;Acc:ZDB-GENE-030131-5132]
78. celf1 ENSDARG00000005315 5598 1.592 - - 0.888 - - 0.704 - - - cugbp, Elav-like family member 1 [Source:ZFIN;Acc:ZDB-GENE-000501-1]
79. sde2 ENSDARG00000024124, ENSDARG00000109881 2342 1.591 - - - - 0.879 - 0.712 - - SDE2 telomere maintenance homolog (S. pombe) [Source:ZFIN;Acc:ZDB-GENE-050417-270]
80. arid1aa ENSDARG00000101710 3644 1.588 - - - - - 0.733 - - 0.855 AT rich interactive domain 1Aa (SWI-like) [Source:ZFIN;Acc:ZDB-GENE-080220-35]
81. znf319 znf319 3027 1.587 - - - - - 0.735 - - 0.852
82. eya3 ENSDARG00000036100 1965 1.586 - - - - 0.838 - 0.748 - - EYA transcriptional coactivator and phosphatase 3 [Source:ZFIN;Acc:ZDB-GENE-060503-864]
83. cyfip2 ENSDARG00000036375, ENSDARG00000110155, ENSDARG00000114426 2788 1.585 - - - - - - - 0.719 0.866 cytoplasmic FMR1 interacting protein 2 [Source:ZFIN;Acc:ZDB-GENE-080724-2]
84. zgc:100920 ENSDARG00000042961, ENSDARG00000112929 1384 1.583 - - - - - 0.843 - - 0.740 zgc:100920 [Source:ZFIN;Acc:ZDB-GENE-040801-156]
85. rbmx ENSDARG00000014244 3445 1.582 - - - - - - 0.796 - 0.786 RNA binding motif protein X-linked [Source:ZFIN;Acc:ZDB-GENE-030131-579]
86. cldn12 ENSDARG00000003927 2024 1.581 - - - - 0.858 - 0.723 - - claudin 12 [Source:ZFIN;Acc:ZDB-GENE-010328-14]
87. fzd8a ENSDARG00000045444 802 1.579 - - - - 0.868 - 0.711 - - frizzled class receptor 8a [Source:ZFIN;Acc:ZDB-GENE-000328-3]
88. dhx9 ENSDARG00000079725 1241 1.579 - - - - 0.877 - - - 0.702 DEAH (Asp-Glu-Ala-His) box helicase 9 [Source:ZFIN;Acc:ZDB-GENE-070912-171]
89. ZNF646 ENSDARG00000061424 1549 1.578 - - - - - - 0.791 - 0.787 zinc finger protein 646 [Source:ZFIN;Acc:ZDB-GENE-160627-3]
90. pcf11 ENSDARG00000044625, ENSDARG00000114082 1885 1.576 - 0.824 - - - - - - 0.752 PCF11, cleavage and polyadenylation factor subunit [Source:ZFIN;Acc:ZDB-GENE-041114-175]
91. ctbp1 ENSDARG00000057007, ENSDARG00000115804 5795 1.576 - - - - - 0.770 0.806 - - C-terminal binding protein 1 [Source:ZFIN;Acc:ZDB-GENE-010130-1]
92. rbm25 rbm25 3629 1.575 - - - - - 0.753 - - 0.822
93. snrpc ENSDARG00000009871 9567 1.57 - - - - - - 0.742 - 0.828 small nuclear ribonucleoprotein polypeptide C [Source:ZFIN;Acc:ZDB-GENE-020419-26]
94. hnrnpm ENSDARG00000061735 19428 1.568 - - 0.804 - - - - - 0.764 heterogeneous nuclear ribonucleoprotein M [Source:ZFIN;Acc:ZDB-GENE-030131-6898]
95. si:dkey-19e4.5 ENSDARG00000089886 2562 1.567 - - - - 0.863 0.704 - - - si:dkey-19e4.5 [Source:ZFIN;Acc:ZDB-GENE-030131-1852]
96. rtca ENSDARG00000002215 3558 1.566 - - - - - - 0.718 - 0.848 RNA 3'-terminal phosphate cyclase [Source:ZFIN;Acc:ZDB-GENE-030131-9687]
97. smarca5 ENSDARG00000052348 15433 1.566 - - - - - 0.713 - - 0.853 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5 [Source:ZFIN;Acc:ZDB-GENE-021125-1]
98. emc7 ENSDARG00000012144 1608 1.563 0.794 - - - - 0.769 - - - ER membrane protein complex subunit 7 [Source:ZFIN;Acc:ZDB-GENE-041001-170]
99. znf292a ENSDARG00000016763 2253 1.563 - - - - - 0.704 - - 0.859 zinc finger protein 292a [Source:ZFIN;Acc:ZDB-GENE-071004-18]
100. hoxc8a ENSDARG00000070346 4252 1.563 - - - - - 0.748 0.815 - - homeobox C8a [Source:ZFIN;Acc:ZDB-GENE-990415-114]

There are 1206 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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