Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

Zebrafish data search


search
Exact
Search
Limit to:

{{libname.name}} 

Results for pbx1a

Gene Name Gene ID Reads Annotation
pbx1a ENSDARG00000100494 854 pre-B-cell leukemia homeobox 1a [Source:ZFIN;Acc:ZDB-GENE-000405-1]










Genes with expression patterns similar to pbx1a

Nr. Gene Name Gene ID Reads Σ scores 28hpf trunk1 28hpf trunk2 28hpf whole1 28hpf whole2 28hpf whole3 PA 40hpf trunk1 40hpf trunk2 40hpf whole embryo1 40hpf whole embryo2 Annotation
1. pbx1a ENSDARG00000100494 854 9 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 pre-B-cell leukemia homeobox 1a [Source:ZFIN;Acc:ZDB-GENE-000405-1]
2. psmb2 ENSDARG00000031511 4016 2.417 - - - - 0.983 0.725 0.709 - - proteasome subunit beta 2 [Source:ZFIN;Acc:ZDB-GENE-040718-353]
3. ifrd2 ENSDARG00000036811, ENSDARG00000115385 3697 1.778 - 0.787 - - 0.991 - - - - interferon-related developmental regulator 2 [Source:ZFIN;Acc:ZDB-GENE-040801-140]
4. iars2 ENSDARG00000044134 1990 1.778 - 0.783 - - 0.995 - - - - isoleucyl-tRNA synthetase 2, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-030616-608]
5. CCDC71 CCDC71 2442 1.754 - - - - 0.983 - 0.771 - -
6. DENND4B ENSDARG00000102914 1001 1.741 - - - - 0.993 0.748 - - - DENN/MADD domain containing 4B [Source:ZFIN;Acc:ZDB-GENE-130530-684]
7. nudt3a ENSDARG00000016256 2713 1.738 - 0.749 - - 0.989 - - - - nudix (nucleoside diphosphate linked moiety X)-type motif 3a [Source:ZFIN;Acc:ZDB-GENE-040426-792]
8. tardbpl ENSDARG00000004452, ENSDARG00000116205 12160 1.713 - - - - 0.966 - 0.747 - - TAR DNA binding protein, like [Source:ZFIN;Acc:ZDB-GENE-031030-1]
9. smarcd3a ENSDARG00000038786 2894 1.712 - - - - 0.958 0.754 - - - SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 3a [Source:ZFIN;Acc:ZDB-GENE-070912-491]
10. hcfc1b ENSDARG00000012519 3633 1.704 - 0.727 - - 0.977 - - - - host cell factor C1b [Source:ZFIN;Acc:ZDB-GENE-030131-2411]
11. atp1a1b ENSDARG00000019856, ENSDARG00000115121 1953 1.689 - - - - 0.972 - 0.717 - - ATPase Na+/K+ transporting subunit alpha 1b [Source:ZFIN;Acc:ZDB-GENE-001212-5]
12. pbdc1 ENSDARG00000057299, ENSDARG00000111256, ENSDARG00000112544 5960 1.686 - - - - 0.914 0.772 - - - polysaccharide biosynthesis domain containing 1 [Source:ZFIN;Acc:ZDB-GENE-040718-459]
13. snrpa ENSDARG00000018890 4593 1.663 - - - - 0.931 - - - 0.732 small nuclear ribonucleoprotein polypeptide A [Source:ZFIN;Acc:ZDB-GENE-030131-2841]
14. actl6a ENSDARG00000070828, ENSDARG00000115348 1961 1.663 - 0.835 - - - - 0.828 - - actin-like 6A [Source:ZFIN;Acc:ZDB-GENE-020419-36]
15. wsb1 ENSDARG00000021343 3828 1.652 - - - - 0.951 0.701 - - - WD repeat and SOCS box containing 1 [Source:ZFIN;Acc:ZDB-GENE-030131-1946]
16. fnta ENSDARG00000099143 1845 1.624 - 0.758 - - - 0.866 - - - farnesyltransferase, CAAX box, alpha [Source:ZFIN;Acc:ZDB-GENE-030131-866]
17. smyd1b ENSDARG00000091253 4964 1.594 0.715 - - - 0.879 - - - - SET and MYND domain containing 1b [Source:ZFIN;Acc:ZDB-GENE-060522-1]
18. pdcd5 ENSDARG00000026072 3135 1.549 0.817 - - - - - 0.732 - - programmed cell death 5 [Source:ZFIN;Acc:ZDB-GENE-040426-980]
19. tmsb ENSDARG00000054911 6411 1.533 0.804 - - - - - 0.729 - - thymosin, beta [Source:ZFIN;Acc:ZDB-GENE-050307-5]
20. marcksa ENSDARG00000004049 2518 1.496 - - - - - - 0.794 - 0.702 myristoylated alanine-rich protein kinase C substrate a [Source:ZFIN;Acc:ZDB-GENE-050522-145]
21. hnrnpub ENSDARG00000004735 16496 1.492 - - - - - - 0.786 - 0.706 heterogeneous nuclear ribonucleoprotein Ub [Source:ZFIN;Acc:ZDB-GENE-030131-6422]
22. eif2s3 ENSDARG00000008292 17051 1.486 0.744 0.742 - - - - - - - eukaryotic translation initiation factor 2, subunit 3 gamma [Source:ZFIN;Acc:ZDB-GENE-030131-5552]
23. RANBP2 ENSDARG00000093125 1854 1.484 - 0.722 - - - - 0.762 - - RAN binding protein 2 [Source:HGNC Symbol;Acc:HGNC:9848]
24. sh3glb2b ENSDARG00000035470, ENSDARG00000109833 719 1.476 0.749 - - - - - 0.727 - - SH3-domain GRB2-like endophilin B2b [Source:ZFIN;Acc:ZDB-GENE-040426-833]
25. si:ch73-21k16.6 si:ch73-21k16.6 4896 1.475 - 0.713 - - - - 0.762 - -
26. mrpl22 ENSDARG00000109961 1374 1.473 0.764 - - - - 0.709 - - - mitochondrial ribosomal protein L22 [Source:ZFIN;Acc:ZDB-GENE-080303-28]
27. gap43 ENSDARG00000099744 4114 1.465 - - - - - - 0.714 - 0.751 growth associated protein 43 [Source:ZFIN;Acc:ZDB-GENE-990415-87]
28. dip2ba ENSDARG00000005350, ENSDARG00000111011, ENSDARG00000111214 1640 1.463 - 0.728 - - - - 0.735 - - disco-interacting protein 2 homolog Ba [Source:ZFIN;Acc:ZDB-GENE-040426-2305]
29. rgmd ENSDARG00000034013, ENSDARG00000111872 4752 1.458 0.738 - - - - - 0.720 - - RGM domain family, member D [Source:ZFIN;Acc:ZDB-GENE-030131-561]
30. usb1 ENSDARG00000003841 524 1.456 - 0.743 - - - - 0.713 - - U6 snRNA biogenesis 1 [Source:ZFIN;Acc:ZDB-GENE-040801-197]
31. eif4e2 ENSDARG00000038585 2116 1.451 0.732 - - - - 0.719 - - - eukaryotic translation initiation factor 4E family member 2 [Source:ZFIN;Acc:ZDB-GENE-050327-59]
32. pfn2l ENSDARG00000012682 21690 1.447 0.727 - - - 0.720 - - - - profilin 2 like [Source:ZFIN;Acc:ZDB-GENE-030131-34]
33. rassf1 ENSDARG00000004840 1248 1.447 0.720 0.727 - - - - - - - Ras association (RalGDS/AF-6) domain family 1 [Source:ZFIN;Acc:ZDB-GENE-040912-14]
34. cdkn1c cdkn1c 17427 1.444 0.741 - - - - - 0.703 - -
35. txlnbb ENSDARG00000076241 6396 1.441 0.727 - - - - 0.714 - - - taxilin beta b [Source:ZFIN;Acc:ZDB-GENE-070424-77]
36. tmem35 ENSDARG00000052567 5685 1.439 - - - - - - 0.720 - 0.719 transmembrane protein 35 [Source:ZFIN;Acc:ZDB-GENE-030815-1]
37. prmt1 ENSDARG00000010246 11311 1.438 - 0.704 - - - 0.734 - - - protein arginine methyltransferase 1 [Source:ZFIN;Acc:ZDB-GENE-030131-693]
38. Sep-06 Sep-06 5465 1.438 - 0.729 - - - - - - 0.709
39. pcdh19 ENSDARG00000034344 2378 1.436 - 0.733 - - - - - - 0.703 protocadherin 19 [Source:ZFIN;Acc:ZDB-GENE-030131-4218]
40. ccnt1 ENSDARG00000017525 1888 1.436 - 0.722 - - - 0.714 - - - cyclin T1 [Source:ZFIN;Acc:ZDB-GENE-030131-6397]
41. mdh1b ENSDARG00000018008 3196 1.421 0.702 - - - - 0.719 - - - malate dehydrogenase 1B, NAD (soluble) [Source:ZFIN;Acc:ZDB-GENE-060929-384]
42. pnisr ENSDARG00000069855, ENSDARG00000116449 3465 1.417 - 0.701 - - - - 0.716 - - PNN-interacting serine/arginine-rich protein [Source:ZFIN;Acc:ZDB-GENE-030131-362]
43. VPRBP VPRBP 727 1.416 - 0.705 - - - 0.711 - - -
44. cldn5a ENSDARG00000043716 3865 1.408 0.704 - - - - - 0.704 - - claudin 5a [Source:ZFIN;Acc:ZDB-GENE-040426-2442]
45. sema3fa ENSDARG00000011163 759 0.999 - - - - 0.999 - - - - sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3Fa [Source:ZFIN;Acc:ZDB-GENE-050513-1]
46. tmem234 ENSDARG00000078333 488 0.999 - - - - 0.999 - - - - transmembrane protein 234 [Source:ZFIN;Acc:ZDB-GENE-090313-326]
47. git2b ENSDARG00000042791, ENSDARG00000111846 1332 0.999 - - - - 0.999 - - - - G protein-coupled receptor kinase interacting ArfGAP 2b [Source:ZFIN;Acc:ZDB-GENE-070112-2192]
48. si:dkey-114e9.1 si:dkey-114e9.1 233 0.999 - - - - 0.999 - - - -
49. CABZ01073954.1 CABZ01073954.1 258 0.999 - - - - 0.999 - - - -
50. errfi1 errfi1 979 0.999 - - - - 0.999 - - - -
51. kcnq5a ENSDARG00000069954 492 0.999 - - - - 0.999 - - - - potassium voltage-gated channel, KQT-like subfamily, member 5a [Source:ZFIN;Acc:ZDB-GENE-090312-185]
52. slc46a1 ENSDARG00000026149 297 0.999 - - - - 0.999 - - - - solute carrier family 46 (folate transporter), member 1 [Source:ZFIN;Acc:ZDB-GENE-040426-1012]
53. bin2b ENSDARG00000010255 2649 0.999 - - - - 0.999 - - - - bridging integrator 2b [Source:ZFIN;Acc:ZDB-GENE-030131-5598]
54. synm ENSDARG00000062350, ENSDARG00000113948, ENSDARG00000114029 483 0.999 - - - - 0.999 - - - - synemin, intermediate filament protein [Source:ZFIN;Acc:ZDB-GENE-050419-81]
55. si:dkey-70e17.2 si:dkey-70e17.2 371 0.999 - - - - 0.999 - - - -
56. si:dkey-30k6.5 ENSDARG00000057238 617 0.999 - - - - 0.999 - - - - si:dkey-30k6.5 [Source:ZFIN;Acc:ZDB-GENE-091204-299]
57. trim24 ENSDARG00000103350 431 0.998 - - - - 0.998 - - - - tripartite motif containing 24 [Source:ZFIN;Acc:ZDB-GENE-030131-5913]
58. C3H16orf89 C3H16orf89 449 0.998 - - - - 0.998 - - - -
59. vldlr ENSDARG00000006257 772 0.998 - - - - 0.998 - - - - very low density lipoprotein receptor [Source:ZFIN;Acc:ZDB-GENE-040426-803]
60. nrg2a ENSDARG00000077818 854 0.998 - - - - 0.998 - - - - neuregulin 2a [Source:ZFIN;Acc:ZDB-GENE-070615-10]
61. ripk4 ENSDARG00000043211 775 0.997 - - - - 0.997 - - - - receptor-interacting serine-threonine kinase 4 [Source:ZFIN;Acc:ZDB-GENE-040426-2042]
62. elk3 ENSDARG00000018688, ENSDARG00000110853 1108 0.997 - - - - 0.997 - - - - ELK3, ETS-domain protein [Source:ZFIN;Acc:ZDB-GENE-030716-2]
63. gabpb2a ENSDARG00000007943 1570 0.997 - - - - 0.997 - - - - GA binding protein transcription factor subunit beta 2a [Source:ZFIN;Acc:ZDB-GENE-030131-5733]
64. slc48a1b ENSDARG00000026109 1427 0.997 - - - - 0.997 - - - - solute carrier family 48 (heme transporter), member 1b [Source:ZFIN;Acc:ZDB-GENE-030131-8226]
65. epc1 epc1 1164 0.997 - - - - 0.997 - - - -
66. slc4a2b ENSDARG00000052330 1900 0.997 - - - - 0.997 - - - - solute carrier family 4 (anion exchanger), member 2b [Source:ZFIN;Acc:ZDB-GENE-030429-14]
67. ttc27 ENSDARG00000007918 1228 0.997 - - - - 0.997 - - - - tetratricopeptide repeat domain 27 [Source:ZFIN;Acc:ZDB-GENE-030102-1]
68. tpt1 ENSDARG00000092693 1110 0.997 - - - - 0.997 - - - - tumor protein, translationally-controlled 1 [Source:ZFIN;Acc:ZDB-GENE-990603-10]
69. acvr2aa ENSDARG00000011188 1454 0.997 - - - - 0.997 - - - - activin A receptor type 2Aa [Source:ZFIN;Acc:ZDB-GENE-980526-227]
70. ERO1LB ERO1LB 1433 0.997 - - - - 0.997 - - - -
71. wdr43 ENSDARG00000077264 1992 0.996 - - - - 0.996 - - - - WD repeat domain 43 [Source:ZFIN;Acc:ZDB-GENE-021231-3]
72. RNF111 ENSDARG00000078802 1357 0.996 - - - - 0.996 - - - - ring finger protein 111 [Source:ZFIN;Acc:ZDB-GENE-070808-2]
73. rfc5 ENSDARG00000035634 974 0.996 - - - - 0.996 - - - - replication factor C (activator 1) 5 [Source:ZFIN;Acc:ZDB-GENE-040907-1]
74. smim7 ENSDARG00000074848 1260 0.995 - - - - 0.995 - - - - small integral membrane protein 7 [Source:ZFIN;Acc:ZDB-GENE-060810-180]
75. inpp4aa ENSDARG00000063352 1297 0.995 - - - - 0.995 - - - - inositol polyphosphate-4-phosphatase type I Aa [Source:ZFIN;Acc:ZDB-GENE-060312-5]
76. zdhhc9 ENSDARG00000060515 981 0.995 - - - - 0.995 - - - - zinc finger, DHHC-type containing 9 [Source:ZFIN;Acc:ZDB-GENE-071004-8]
77. RNF214 RNF214 816 0.995 - - - - 0.995 - - - -
78. ppip5k2 ENSDARG00000078441 1074 0.995 - - - - 0.995 - - - - diphosphoinositol pentakisphosphate kinase 2 [Source:ZFIN;Acc:ZDB-GENE-091204-125]
79. slc9a3r1 slc9a3r1 743 0.994 - - - - 0.994 - - - -
80. klf11a ENSDARG00000030844 3972 0.994 - - - - 0.994 - - - - Kruppel-like factor 11a [Source:ZFIN;Acc:ZDB-GENE-030131-3568]
81. pim3 ENSDARG00000055129 1517 0.994 - - - - 0.994 - - - - Pim-3 proto-oncogene, serine/threonine kinase [Source:ZFIN;Acc:ZDB-GENE-050809-111]
82. VPS37B_1 VPS37B_1 1816 0.994 - - - - 0.994 - - - -
83. commd4 ENSDARG00000061946 3281 0.994 - - - - 0.994 - - - - COMM domain containing 4 [Source:ZFIN;Acc:ZDB-GENE-060929-600]
84. itga5 ENSDARG00000006353 1876 0.994 - - - - 0.994 - - - - integrin, alpha 5 (fibronectin receptor, alpha polypeptide) [Source:ZFIN;Acc:ZDB-GENE-031116-52]
85. KIF4A KIF4A 3322 0.994 - - - - 0.994 - - - -
86. CR361563.1 CR361563.1 1355 0.993 - - - - 0.993 - - - -
87. foxa2 ENSDARG00000003411 2309 0.993 - - - - 0.993 - - - - forkhead box A2 [Source:ZFIN;Acc:ZDB-GENE-980526-404]
88. ARID3A ENSDARG00000070843 1613 0.993 - - - - 0.993 - - - - AT rich interactive domain 3A (BRIGHT-like) [Source:ZFIN;Acc:ZDB-GENE-140106-97]
89. zgc:163098 ENSDARG00000078911, ENSDARG00000111691, ENSDARG00000113714, ENSDARG00000115110 1802 0.993 - - - - 0.993 - - - - zgc:163098 [Source:ZFIN;Acc:ZDB-GENE-070410-141]
90. CABZ01072607.1 ENSDARG00000113761 784 0.993 - - - - 0.993 - - - - dynein cytoplasmic 2 heavy chain 1 [Source:NCBI gene;Acc:100332402]
91. cisd1 ENSDARG00000079516, ENSDARG00000114546 2677 0.992 - - - - 0.992 - - - - CDGSH iron sulfur domain 1 [Source:ZFIN;Acc:ZDB-GENE-040426-1162]
92. rnd3a ENSDARG00000076799 4705 0.992 - - - - 0.992 - - - - Rho family GTPase 3a [Source:ZFIN;Acc:ZDB-GENE-010319-40]
93. ctdspla ENSDARG00000071673 1447 0.992 - - - - 0.992 - - - - CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase-like a [Source:ZFIN;Acc:ZDB-GENE-060825-333]
94. MARK3 MARK3 1767 0.992 - - - - 0.992 - - - -
95. srcap ENSDARG00000005236 1740 0.992 - - - - 0.992 - - - - Snf2-related CREBBP activator protein [Source:ZFIN;Acc:ZDB-GENE-041008-127]
96. 5S_rRNA_21 5S_rRNA_21 1323 0.992 - - - - 0.992 - - - -
97. si:dkey-228b2.5 1760 0.992 - - - - 0.992 - - - - si:dkey-228b2.5
98. BX571880.1 ENSDARG00000097533 499 0.991 - - - - 0.991 - - - -
99. ifrd1 ENSDARG00000068708 2858 0.991 - - - - 0.991 - - - - interferon-related developmental regulator 1 [Source:ZFIN;Acc:ZDB-GENE-030131-6132]
100. limk2 ENSDARG00000005104 2598 0.991 - - - - 0.991 - - - - LIM domain kinase 2 [Source:ZFIN;Acc:ZDB-GENE-040718-398]

There are 743 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA