Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Results for lsm1

Gene Name Gene ID Reads Annotation
lsm1 ENSDARG00000043177 767 LSM1, U6 small nuclear RNA associated [Source:ZFIN;Acc:ZDB-GENE-040801-68]










Genes with expression patterns similar to lsm1

Nr. Gene Name Gene ID Reads Σ scores 28hpf trunk1 28hpf trunk2 28hpf whole1 28hpf whole2 28hpf whole3 PA 40hpf trunk1 40hpf trunk2 40hpf whole embryo1 40hpf whole embryo2 Annotation
1. lsm1 ENSDARG00000043177 767 9 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 LSM1, U6 small nuclear RNA associated [Source:ZFIN;Acc:ZDB-GENE-040801-68]
2. anapc11 ENSDARG00000102531, ENSDARG00000116987 1769 1.95 - 0.999 - - - - - - 0.951 APC11 anaphase promoting complex subunit 11 homolog (yeast) [Source:ZFIN;Acc:ZDB-GENE-061013-383]
3. dmbx1b ENSDARG00000002510 351 1.895 - - - - - - 0.931 - 0.964 diencephalon/mesencephalon homeobox 1b [Source:ZFIN;Acc:ZDB-GENE-050417-97]
4. rbm34 ENSDARG00000101877 1573 1.838 - 0.870 - - - - - - 0.968 RNA binding motif protein 34 [Source:ZFIN;Acc:ZDB-GENE-040718-77]
5. tra2a ENSDARG00000007863 4449 1.821 - 0.983 - - - - - - 0.838 transformer 2 alpha homolog [Source:ZFIN;Acc:ZDB-GENE-040426-1391]
6. pbxip1b ENSDARG00000011824 3726 1.798 - 0.935 - - - - - - 0.863 pre-B-cell leukemia homeobox interacting protein 1b [Source:ZFIN;Acc:ZDB-GENE-070112-2032]
7. LPL_1 LPL_1 1150 1.781 0.836 - - - - - - - 0.945
8. kif18a ENSDARG00000008022 546 1.77 - - - - - - 0.831 - 0.939 kinesin family member 18A [Source:ZFIN;Acc:ZDB-GENE-040426-862]
9. zgc:77158 ENSDARG00000013784 634 1.751 - 0.999 0.752 - - - - - - zgc:77158 [Source:ZFIN;Acc:ZDB-GENE-040426-1799]
10. brca2 ENSDARG00000079015 410 1.739 - 1.000 0.739 - - - - - - breast cancer 2, early onset [Source:ZFIN;Acc:ZDB-GENE-060510-3]
11. ly75 ENSDARG00000053113 196 1.735 - - - - - 0.834 0.901 - - lymphocyte antigen 75 [Source:ZFIN;Acc:ZDB-GENE-050309-166]
12. ZFAT ENSDARG00000077987 205 1.726 - - - - - 0.750 - - 0.976 zinc finger and AT hook domain containing [Source:ZFIN;Acc:ZDB-GENE-130204-2]
13. plagx ENSDARG00000036855 3768 1.722 - 0.995 - - - - - - 0.727 pleiomorphic adenoma gene X [Source:ZFIN;Acc:ZDB-GENE-030131-839]
14. limk1b ENSDARG00000003022 172 1.712 - - - - - 0.781 0.931 - - LIM domain kinase 1b [Source:ZFIN;Acc:ZDB-GENE-110411-106]
15. zgc:173480 171 1.709 - - - - - 0.729 - - 0.980 zgc:173480
16. tom1l2 ENSDARG00000009217, ENSDARG00000111492 1639 1.702 - - - - - 0.772 - - 0.930 target of myb1 like 2 membrane trafficking protein [Source:ZFIN;Acc:ZDB-GENE-061013-3]
17. ZNF518B 475 1.702 - - 0.732 - - - - - 0.970 zinc finger protein 518B
18. axin1 ENSDARG00000102964 1710 1.696 0.701 0.995 - - - - - - - axin 1 [Source:ZFIN;Acc:ZDB-GENE-000403-1]
19. ptn ENSDARG00000102340 229 1.69 - - 0.711 - - - - - 0.979 pleiotrophin [Source:ZFIN;Acc:ZDB-GENE-030624-1]
20. gb:bc139653 gb:bc139653 239 1.688 0.766 - - - - - 0.922 - -
21. slit2 ENSDARG00000004246 5277 1.681 - 0.926 - - - - - - 0.755 slit homolog 2 (Drosophila) [Source:ZFIN;Acc:ZDB-GENE-010306-3]
22. cdan1 ENSDARG00000042261 658 1.681 0.701 - - - - - - - 0.980 codanin 1 [Source:ZFIN;Acc:ZDB-GENE-110411-280]
23. yipf2 ENSDARG00000021399 702 1.674 0.706 - - - - - - - 0.968 Yip1 domain family, member 2 [Source:ZFIN;Acc:ZDB-GENE-040724-124]
24. NHS NHS 409 1.667 0.703 - - - - - - - 0.964
25. srek1ip1 ENSDARG00000043728 985 1.664 - - - - - - - 0.727 0.937 SREK1-interacting protein 1 [Source:ZFIN;Acc:ZDB-GENE-051030-24]
26. prkrip1 ENSDARG00000033126, ENSDARG00000113803 1634 1.663 - - 0.748 - - - - - 0.915 PRKR interacting protein 1 [Source:ZFIN;Acc:ZDB-GENE-111011-2]
27. si:ch211-14a11.5 199 1.643 0.742 - - - - - 0.901 - - si:ch211-14a11.5
28. plch2a ENSDARG00000059960 222 1.638 - - - - - 0.736 0.902 - - phospholipase C, eta 2a [Source:ZFIN;Acc:ZDB-GENE-030131-6367]
29. map1lc3c ENSDARG00000100528 31 1.631 - - 0.713 - - - 0.918 - - microtubule-associated protein 1 light chain 3 gamma [Source:ZFIN;Acc:ZDB-GENE-040426-1080]
30. tango6 ENSDARG00000034001 203 1.624 0.741 - - - - - 0.883 - - transport and golgi organization 6 homolog (Drosophila) [Source:ZFIN;Acc:ZDB-GENE-050419-237]
31. ngfrb ENSDARG00000089223, ENSDARG00000115390 41 1.621 - - 0.733 - - - 0.888 - - nerve growth factor receptor b [Source:ZFIN;Acc:ZDB-GENE-070606-2]
32. lmnb2 ENSDARG00000101624 11304 1.616 - 0.908 - - - 0.708 - - - lamin B2 [Source:ZFIN;Acc:ZDB-GENE-990630-13]
33. casp6l1 ENSDARG00000025608, ENSDARG00000117004 107 1.611 - - - - - 0.734 0.877 - - caspase 6, apoptosis-related cysteine peptidase, like 1 [Source:ZFIN;Acc:ZDB-GENE-041010-48]
34. arpc5la ENSDARG00000041720 143 1.61 0.837 - - - - - 0.773 - - actin related protein 2/3 complex, subunit 5-like, a [Source:ZFIN;Acc:ZDB-GENE-040426-1453]
35. tut1 ENSDARG00000057321 301 1.61 0.847 - - - - - 0.763 - - terminal uridylyl transferase 1, U6 snRNA-specific [Source:ZFIN;Acc:ZDB-GENE-050706-68]
36. CR376738.1 ENSDARG00000100433 660 1.608 - - - - - 0.764 0.844 - -
37. papss2a ENSDARG00000071021, ENSDARG00000110734, ENSDARG00000112597 49 1.607 0.711 - - - - - 0.896 - - 3'-phosphoadenosine 5'-phosphosulfate synthase 2a [Source:ZFIN;Acc:ZDB-GENE-061110-85]
38. eif4e3 ENSDARG00000005078 1624 1.603 - - - - - - 0.721 - 0.882 eukaryotic translation initiation factor 4E family member 3 [Source:ZFIN;Acc:ZDB-GENE-040912-156]
39. U1_50 U1_50 62 1.599 - - 0.715 - - - 0.884 - -
40. si:dkey-15h8.15 ENSDARG00000102601 335 1.588 0.752 - - - - - 0.836 - - si:dkey-15h8.15 [Source:ZFIN;Acc:ZDB-GENE-050208-626]
41. rapgef5a ENSDARG00000075271 282 1.574 0.827 - - - - 0.747 - - - Rap guanine nucleotide exchange factor (GEF) 5a [Source:ZFIN;Acc:ZDB-GENE-030131-7681]
42. dpf3 ENSDARG00000025309 1376 1.543 - - - - - 0.753 - - 0.790 D4, zinc and double PHD fingers, family 3 [Source:ZFIN;Acc:ZDB-GENE-041014-190]
43. C13H4orf32 C13H4orf32 174 1.543 0.837 - - - - - 0.706 - -
44. ripply1 ENSDARG00000054103 367 1.539 0.769 - - - - 0.770 - - - ripply transcriptional repressor 1 [Source:ZFIN;Acc:ZDB-GENE-060113-1]
45. setd5 ENSDARG00000078576 1974 1.522 - - - - - - 0.708 - 0.814 SET domain containing 5 [Source:ZFIN;Acc:ZDB-GENE-080523-1]
46. brd3a ENSDARG00000006527 1636 1.521 - - - - - - - 0.718 0.803 bromodomain containing 3a [Source:ZFIN;Acc:ZDB-GENE-030131-6141]
47. ippk ENSDARG00000003446 51 1.512 - - 0.738 - - 0.774 - - - inositol 1,3,4,5,6-pentakisphosphate 2-kinase [Source:ZFIN;Acc:ZDB-GENE-050327-41]
48. zgc:193682 zgc:193682 15 1.476 - - - - - 0.739 0.737 - -
49. si:dkeyp-113d7.10 ENSDARG00000092359 1585 1.468 - - - - - 0.751 - 0.717 - si:dkeyp-113d7.10 [Source:ZFIN;Acc:ZDB-GENE-061207-80]
50. tmem136a ENSDARG00000024920 535 1.464 - - - - 0.732 - - 0.732 - transmembrane protein 136a [Source:ZFIN;Acc:ZDB-GENE-000607-58]
51. mysm1 ENSDARG00000034693 291 1.456 - - 0.708 - - - 0.748 - - Myb-like, SWIRM and MPN domains 1 [Source:ZFIN;Acc:ZDB-GENE-041014-28]
52. e2f7 ENSDARG00000008986 1439 1.455 - - - - - 0.720 0.735 - - E2F transcription factor 7 [Source:ZFIN;Acc:ZDB-GENE-030131-3527]
53. msxa msxa 263 1.455 - - 0.716 - - 0.739 - - -
54. nckap1 ENSDARG00000060853 3540 1.454 - - 0.716 - - - - - 0.738 NCK-associated protein 1 [Source:ZFIN;Acc:ZDB-GENE-030131-4426]
55. nudt22 ENSDARG00000071671 411 1.443 0.725 - - - - 0.718 - - - nudix (nucleoside diphosphate linked moiety X)-type motif 22 [Source:ZFIN;Acc:ZDB-GENE-041010-171]
56. cbx6a ENSDARG00000071051 379 1.428 - - - - - 0.704 0.724 - - chromobox homolog 6a [Source:ZFIN;Acc:ZDB-GENE-040808-26]
57. sema3gb ENSDARG00000013607 1531 1 - 1.000 - - - - - - - sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3Gb [Source:ZFIN;Acc:ZDB-GENE-050513-4]
58. crabp2a ENSDARG00000073978 868 1 - 1.000 - - - - - - - cellular retinoic acid binding protein 2, a [Source:ZFIN;Acc:ZDB-GENE-020320-4]
59. si:ch211-251b21.1 ENSDARG00000007275 15724 1 - 1.000 - - - - - - - si:ch211-251b21.1 [Source:ZFIN;Acc:ZDB-GENE-060809-5]
60. tnfaip1 ENSDARG00000041565, ENSDARG00000113688, ENSDARG00000115018 553 1 - 1.000 - - - - - - - tumor necrosis factor, alpha-induced protein 1 (endothelial) [Source:ZFIN;Acc:ZDB-GENE-030131-5610]
61. CABZ01061717.1 CABZ01061717.1 320 1 - 1.000 - - - - - - -
62. RMDN2 ENSDARG00000078761 717 1 - 1.000 - - - - - - - regulator of microtubule dynamics 2 [Source:ZFIN;Acc:ZDB-GENE-111223-1]
63. ogfr ENSDARG00000037837 1001 1 - 1.000 - - - - - - - opioid growth factor receptor [Source:ZFIN;Acc:ZDB-GENE-030131-377]
64. glo1 ENSDARG00000068978 1384 1 - 1.000 - - - - - - - glyoxalase 1 [Source:ZFIN;Acc:ZDB-GENE-030722-9]
65. zgc:110191 zgc:110191 359 1 - 1.000 - - - - - - -
66. rarga ENSDARG00000034117 1238 1 - 1.000 - - - - - - - retinoic acid receptor gamma a [Source:ZFIN;Acc:ZDB-GENE-980526-531]
67. klhl20 ENSDARG00000038801 936 1 - 1.000 - - - - - - - kelch-like family member 20 [Source:ZFIN;Acc:ZDB-GENE-040426-1935]
68. uqcrfs1 ENSDARG00000007745 4654 1 - 1.000 - - - - - - - ubiquinol-cytochrome c reductase, Rieske iron-sulfur polypeptide 1 [Source:ZFIN;Acc:ZDB-GENE-040426-2060]
69. recql ENSDARG00000007175 501 1 - 1.000 - - - - - - - RecQ helicase-like [Source:ZFIN;Acc:ZDB-GENE-050809-134]
70. ms4a17a.7 ENSDARG00000043796 352 1 - 1.000 - - - - - - - membrane-spanning 4-domains, subfamily A, member 17A.7 [Source:ZFIN;Acc:ZDB-GENE-080829-2]
71. si:ch211-13f8.1 ENSDARG00000093342 274 1 - 1.000 - - - - - - - si:ch211-13f8.1 [Source:ZFIN;Acc:ZDB-GENE-061207-4]
72. lbx1a ENSDARG00000018321 634 1 - 1.000 - - - - - - - ladybird homeobox 1a [Source:ZFIN;Acc:ZDB-GENE-040724-40]
73. tert ENSDARG00000042637 463 1 - 1.000 - - - - - - - telomerase reverse transcriptase [Source:ZFIN;Acc:ZDB-GENE-080405-1]
74. naa15b ENSDARG00000030368 535 1 - 1.000 - - - - - - - N(alpha)-acetyltransferase 15, NatA auxiliary subunit b [Source:ZFIN;Acc:ZDB-GENE-030131-6031]
75. hoxa5a ENSDARG00000102501 1667 1 - 1.000 - - - - - - - homeobox A5a [Source:ZFIN;Acc:ZDB-GENE-000823-9]
76. hic1 ENSDARG00000055493 219 1 - 1.000 - - - - - - - hypermethylated in cancer 1 [Source:ZFIN;Acc:ZDB-GENE-040713-2]
77. SFT2D2_1 SFT2D2_1 219 1 - 1.000 - - - - - - -
78. prkcea ENSDARG00000003008 1118 0.999 - 0.999 - - - - - - - protein kinase C, epsilon a [Source:ZFIN;Acc:ZDB-GENE-030131-8191]
79. cnn3b ENSDARG00000029856 4807 0.999 - 0.999 - - - - - - - calponin 3, acidic b [Source:ZFIN;Acc:ZDB-GENE-050522-263]
80. igf1rb ENSDARG00000034434, ENSDARG00000110935 813 0.999 - 0.999 - - - - - - - insulin-like growth factor 1b receptor [Source:ZFIN;Acc:ZDB-GENE-020503-2]
81. stim1a ENSDARG00000060723 1200 0.999 - 0.999 - - - - - - - stromal interaction molecule 1a [Source:ZFIN;Acc:ZDB-GENE-060503-914]
82. capn1a ENSDARG00000052702 1123 0.999 - 0.999 - - - - - - - calpain 1, (mu/I) large subunit a [Source:ZFIN;Acc:ZDB-GENE-040426-1263]
83. aes ENSDARG00000021805, ENSDARG00000115836 1533 0.999 - 0.999 - - - - - - - amino-terminal enhancer of split [Source:ZFIN;Acc:ZDB-GENE-040426-1409]
84. rab8b ENSDARG00000068628, ENSDARG00000111270, ENSDARG00000114110 607 0.999 - 0.999 - - - - - - - RAB8B, member RAS oncogene family [Source:ZFIN;Acc:ZDB-GENE-070620-16]
85. plp1a ENSDARG00000103732 3544 0.999 - 0.999 - - - - - - - proteolipid protein 1a [Source:ZFIN;Acc:ZDB-GENE-001202-1]
86. si:ch211-87l2.1 si:ch211-87l2.1 2403 0.999 - 0.999 - - - - - - -
87. cnot11 ENSDARG00000068596 829 0.999 - 0.999 - - - - - - - CCR4-NOT transcription complex, subunit 11 [Source:ZFIN;Acc:ZDB-GENE-030131-8068]
88. pigp ENSDARG00000038805 611 0.999 - 0.999 - - - - - - - phosphatidylinositol glycan anchor biosynthesis, class P [Source:ZFIN;Acc:ZDB-GENE-030131-4041]
89. znf740 znf740 2458 0.999 - 0.999 - - - - - - -
90. ceacam1 ENSDARG00000041119, ENSDARG00000111374 1763 0.999 - 0.999 - - - - - - - carcinoembryonic antigen-related cell adhesion molecule 1 [Source:ZFIN;Acc:ZDB-GENE-010724-14]
91. ergic2 ENSDARG00000051936, ENSDARG00000111918 798 0.999 - 0.999 - - - - - - - ERGIC and golgi 2 [Source:ZFIN;Acc:ZDB-GENE-040426-1331]
92. txndc9 ENSDARG00000069853, ENSDARG00000110688 1519 0.998 - 0.998 - - - - - - - thioredoxin domain containing 9 [Source:ZFIN;Acc:ZDB-GENE-030131-8569]
93. cylda ENSDARG00000060058 768 0.998 - 0.998 - - - - - - - cylindromatosis (turban tumor syndrome), a [Source:ZFIN;Acc:ZDB-GENE-061108-2]
94. PPFIBP1_1 PPFIBP1_1 2256 0.998 - 0.998 - - - - - - -
95. myo9al1 myo9al1 1194 0.998 - 0.998 - - - - - - -
96. cdipt ENSDARG00000070686 1318 0.998 - 0.998 - - - - - - - CDP-diacylglycerol--inositol 3-phosphatidyltransferase (phosphatidylinositol synthase) [Source:ZFIN;Acc:ZDB-GENE-040426-2536]
97. arl2 ENSDARG00000069496, ENSDARG00000112191 1389 0.998 - 0.998 - - - - - - - ADP-ribosylation factor-like 2 [Source:ZFIN;Acc:ZDB-GENE-041010-19]
98. zeb2a ENSDARG00000062338, ENSDARG00000111349, ENSDARG00000115964 6087 0.997 - 0.997 - - - - - - - zinc finger E-box binding homeobox 2a [Source:ZFIN;Acc:ZDB-GENE-070912-553]
99. ap2b1 ENSDARG00000035152 2912 0.997 - 0.997 - - - - - - - adaptor related protein complex 2 subunit beta 1 [Source:ZFIN;Acc:ZDB-GENE-030131-6564]
100. fam192a ENSDARG00000041631 4113 0.997 - 0.997 - - - - - - - family with sequence similarity 192, member A [Source:ZFIN;Acc:ZDB-GENE-030131-6692]

There are 1436 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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