Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

Zebrafish data search


search
Exact
Search
Limit to:

{{libname.name}} 

Results for hoxa3a

Gene Name Gene ID Reads Annotation
hoxa3a ENSDARG00000103862 2239 homeobox A3a [Source:ZFIN;Acc:ZDB-GENE-000823-3]










Genes with expression patterns similar to hoxa3a

Nr. Gene Name Gene ID Reads Σ scores 28hpf trunk1 28hpf trunk2 28hpf whole1 28hpf whole2 28hpf whole3 PA 40hpf trunk1 40hpf trunk2 40hpf whole embryo1 40hpf whole embryo2 Annotation
1. hoxa3a ENSDARG00000103862 2239 9 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 homeobox A3a [Source:ZFIN;Acc:ZDB-GENE-000823-3]
2. cadpsb ENSDARG00000070567 458 2.626 0.734 - - - - - 0.940 0.952 - Ca2+-dependent activator protein for secretion b [Source:ZFIN;Acc:ZDB-GENE-110621-2]
3. nova2 ENSDARG00000017673 7685 2.58 0.841 0.794 - - - - 0.945 - - neuro-oncological ventral antigen 2 [Source:ZFIN;Acc:ZDB-GENE-080211-1]
4. mapk12b ENSDARG00000006409 2246 2.548 0.863 0.749 - - - - 0.936 - - mitogen-activated protein kinase 12b [Source:ZFIN;Acc:ZDB-GENE-041210-123]
5. hmgb2b ENSDARG00000053990 11519 2.535 0.763 - - - - 0.968 0.804 - - high mobility group box 2b [Source:ZFIN;Acc:ZDB-GENE-040912-122]
6. ek1 ENSDARG00000020080 742 2.53 0.705 - - - - - 0.875 0.950 - eph-like kinase 1 [Source:ZFIN;Acc:ZDB-GENE-990415-58]
7. syt11a ENSDARG00000057913 1145 2.522 0.805 0.778 - - - - 0.939 - - synaptotagmin XIa [Source:ZFIN;Acc:ZDB-GENE-040426-2815]
8. gng3 ENSDARG00000009553 2530 2.522 0.894 0.704 - - - - 0.924 - - guanine nucleotide binding protein (G protein), gamma 3 [Source:ZFIN;Acc:ZDB-GENE-010705-1]
9. AGO1 ENSDARG00000092644 4521 2.511 0.878 0.713 - - - - 0.920 - - argonaute RISC catalytic component 1 [Source:ZFIN;Acc:ZDB-GENE-110606-3]
10. UBE2QL1 ENSDARG00000079276 3474 2.498 0.893 0.714 - - - - 0.891 - - ubiquitin-conjugating enzyme E2Q family-like 1 [Source:ZFIN;Acc:ZDB-GENE-030131-8137]
11. dpysl3 ENSDARG00000002587 4381 2.483 0.769 0.796 - - - - 0.918 - - dihydropyrimidinase-like 3 [Source:ZFIN;Acc:ZDB-GENE-050720-2]
12. CABZ01111990.1 CABZ01111990.1 4374 2.478 0.751 0.810 - - - - 0.917 - -
13. CABZ01072954.1 CABZ01072954.1 2330 2.461 0.732 - - - - - 0.774 0.955 -
14. hpca ENSDARG00000018397, ENSDARG00000110115 3866 2.455 0.800 0.739 - - - - 0.916 - - hippocalcin [Source:ZFIN;Acc:ZDB-GENE-040426-1683]
15. gap43 ENSDARG00000099744 4114 2.45 0.802 0.752 - - - - 0.896 - - growth associated protein 43 [Source:ZFIN;Acc:ZDB-GENE-990415-87]
16. rbfox3 rbfox3 1443 2.449 0.772 0.772 - - - - 0.905 - -
17. stx1b ENSDARG00000000503 2724 2.448 0.792 0.751 - - - - 0.905 - - syntaxin 1B [Source:ZFIN;Acc:ZDB-GENE-000330-4]
18. pcsk1nl ENSDARG00000076170 1232 2.444 0.786 0.726 - - - - 0.932 - - proprotein convertase subtilisin/kexin type 1 inhibitor, like [Source:ZFIN;Acc:ZDB-GENE-090427-2]
19. mtss1l mtss1l 2494 2.44 0.827 - - - - - 0.783 0.830 -
20. syngr3a ENSDARG00000014871 405 2.439 0.771 0.757 - - - - 0.911 - - synaptogyrin 3a [Source:ZFIN;Acc:ZDB-GENE-050522-541]
21. CHL1 CHL1 1553 2.416 0.816 0.725 - - - - 0.875 - -
22. rufy3 ENSDARG00000029692 3031 2.393 0.843 0.706 - - - - 0.844 - - RUN and FYVE domain containing 3 [Source:ZFIN;Acc:ZDB-GENE-050327-58]
23. zeb2a ENSDARG00000062338, ENSDARG00000111349, ENSDARG00000115964 6087 2.387 0.827 - - - - - 0.858 0.702 - zinc finger E-box binding homeobox 2a [Source:ZFIN;Acc:ZDB-GENE-070912-553]
24. lgi1a ENSDARG00000020493 1218 2.342 0.704 0.744 - - - - 0.894 - - leucine-rich, glioma inactivated 1a [Source:ZFIN;Acc:ZDB-GENE-030131-1731]
25. scn8aa ENSDARG00000005775 792 2.339 0.750 0.735 - - - - 0.854 - - sodium channel, voltage gated, type VIII, alpha subunit a [Source:ZFIN;Acc:ZDB-GENE-000828-1]
26. wu:fb17g07 wu:fb17g07 10567 2.321 0.771 0.820 - - - - 0.730 - -
27. s1pr1 ENSDARG00000042690, ENSDARG00000113842, ENSDARG00000116038 2510 2.318 0.717 0.738 - - - - 0.863 - - sphingosine-1-phosphate receptor 1 [Source:ZFIN;Acc:ZDB-GENE-001228-2]
28. slc1a2b ENSDARG00000102453 3136 2.316 0.713 0.734 - - - - 0.869 - - solute carrier family 1 (glial high affinity glutamate transporter), member 2b [Source:ZFIN;Acc:ZDB-GENE-030131-7779]
29. TUSC5 TUSC5 1436 2.306 0.732 0.731 - - - - 0.843 - -
30. hoxc4a ENSDARG00000070338 1382 2.26 0.731 - - - - - 0.738 0.791 - homeobox C4a [Source:ZFIN;Acc:ZDB-GENE-990415-112]
31. gnb5b ENSDARG00000055377 98 2.248 0.732 0.761 - - - - 0.755 - - guanine nucleotide binding protein (G protein), beta 5b [Source:ZFIN;Acc:ZDB-GENE-040426-1712]
32. CASKIN2_1 CASKIN2_1 2299 1.94 - - - - - 0.982 - 0.958 -
33. nfe2l2a ENSDARG00000042824 1707 1.897 - - - - - 0.988 - 0.909 - nuclear factor, erythroid 2-like 2a [Source:ZFIN;Acc:ZDB-GENE-030723-2]
34. olfm1b ENSDARG00000014053 1392 1.867 - - - - - - 0.916 0.951 - olfactomedin 1b [Source:ZFIN;Acc:ZDB-GENE-040801-228]
35. SV2A ENSDARG00000059945 1278 1.863 - - - - - 0.996 0.867 - - synaptic vesicle glycoprotein 2A [Source:ZFIN;Acc:ZDB-GENE-131001-1]
36. c1qtnf4 ENSDARG00000024299 578 1.856 - - - - - 0.986 0.870 - - C1q and TNF related 4 [Source:ZFIN;Acc:ZDB-GENE-050417-198]
37. rasgef1ba ENSDARG00000033614, ENSDARG00000116057 4860 1.854 - - - - - 0.975 - 0.879 - RasGEF domain family, member 1Ba [Source:ZFIN;Acc:ZDB-GENE-030131-5783]
38. pcdh1gc5 ENSDARG00000104826 10052 1.848 0.899 - - - - - 0.949 - - protocadherin 1 gamma c 5 [Source:ZFIN;Acc:ZDB-GENE-041118-16]
39. lrrtm1 ENSDARG00000052713 1041 1.844 - - - - - - 0.917 0.927 - leucine rich repeat transmembrane neuronal 1 [Source:ZFIN;Acc:ZDB-GENE-050506-80]
40. her2 ENSDARG00000038205 3219 1.837 0.901 - - - - - 0.936 - - hairy-related 2 [Source:ZFIN;Acc:ZDB-GENE-980526-274]
41. elovl4a ENSDARG00000006773 412 1.836 - - - - - - 0.894 0.942 - ELOVL fatty acid elongase 4a [Source:ZFIN;Acc:ZDB-GENE-040426-1767]
42. cspg5a ENSDARG00000069981 1699 1.83 0.899 - - - - - 0.931 - - chondroitin sulfate proteoglycan 5a [Source:ZFIN;Acc:ZDB-GENE-080425-4]
43. unc119b ENSDARG00000044362 1528 1.828 - - - - - - 0.922 0.906 - unc-119 homolog b (C. elegans) [Source:ZFIN;Acc:ZDB-GENE-050201-2]
44. bckdha ENSDARG00000040555, ENSDARG00000111762 7620 1.822 - - - - - 0.933 - 0.889 - branched chain keto acid dehydrogenase E1, alpha polypeptide [Source:ZFIN;Acc:ZDB-GENE-050522-376]
45. ckbb ENSDARG00000043257 3503 1.821 0.919 - - - - - 0.902 - - creatine kinase, brain b [Source:ZFIN;Acc:ZDB-GENE-020103-2]
46. dnmt3ab ENSDARG00000015566 1206 1.819 0.900 - - - - - 0.919 - - DNA (cytosine-5-)-methyltransferase 3 alpha b [Source:ZFIN;Acc:ZDB-GENE-050314-3]
47. stmn1b ENSDARG00000033655 9491 1.813 0.883 - - - - - 0.930 - - stathmin 1b [Source:ZFIN;Acc:ZDB-GENE-050417-397]
48. PROSER1 ENSDARG00000086302 1935 1.804 - - - - - 0.987 - 0.817 - proline and serine rich 1 [Source:ZFIN;Acc:ZDB-GENE-111003-1]
49. nkx6.2 ENSDARG00000104735 5081 1.803 - - - - - - 0.938 0.865 - NK6 homeobox 2 [Source:ZFIN;Acc:ZDB-GENE-070626-1]
50. irx1b ENSDARG00000056594 2224 1.8 0.873 - - - - - 0.927 - - iroquois homeobox 1b [Source:ZFIN;Acc:ZDB-GENE-010716-1]
51. dla ENSDARG00000010791 9281 1.797 0.851 - - - - - 0.946 - - deltaA [Source:ZFIN;Acc:ZDB-GENE-980526-29]
52. sypa ENSDARG00000042974, ENSDARG00000110528 3217 1.796 0.868 - - - - - 0.928 - - synaptophysin a [Source:ZFIN;Acc:ZDB-GENE-031104-2]
53. EFCC1 ENSDARG00000077826 1359 1.795 0.877 - - - - - 0.918 - - EF-hand and coiled-coil domain containing 1 [Source:ZFIN;Acc:ZDB-GENE-120813-3]
54. plagx ENSDARG00000036855 3768 1.795 - - - - - 0.995 0.800 - - pleiomorphic adenoma gene X [Source:ZFIN;Acc:ZDB-GENE-030131-839]
55. slc1a3a ENSDARG00000104431 9888 1.794 0.860 - - - - - 0.934 - - solute carrier family 1 (glial high affinity glutamate transporter), member 3a [Source:ZFIN;Acc:ZDB-GENE-030131-2159]
56. dld ENSDARG00000020219 4928 1.794 0.846 - - - - - 0.948 - - deltaD [Source:ZFIN;Acc:ZDB-GENE-990415-47]
57. lrrn1 ENSDARG00000060115, ENSDARG00000115960 5175 1.793 0.850 - - - - - 0.943 - - leucine rich repeat neuronal 1 [Source:ZFIN;Acc:ZDB-GENE-071126-1]
58. nexmifb ENSDARG00000029296 416 1.79 - - - - - - 0.849 0.941 - neurite extension and migration factor b [Source:ZFIN;Acc:ZDB-GENE-140106-18]
59. vim ENSDARG00000010008 3551 1.787 0.892 - - - - - 0.895 - - vimentin [Source:ZFIN;Acc:ZDB-GENE-011212-3]
60. neurog1 ENSDARG00000056130 3924 1.787 0.843 - - - - - 0.944 - - neurogenin 1 [Source:ZFIN;Acc:ZDB-GENE-990415-174]
61. vgf ENSDARG00000105529 247 1.784 0.854 - - - - - 0.930 - - VGF nerve growth factor inducible [Source:ZFIN;Acc:ZDB-GENE-121009-2]
62. ANO8 ANO8 380 1.783 - - - - - - 0.827 0.956 -
63. gfap ENSDARG00000025301 5584 1.782 0.856 - - - - - 0.926 - - glial fibrillary acidic protein [Source:ZFIN;Acc:ZDB-GENE-990914-3]
64. sox19a ENSDARG00000010770, ENSDARG00000110497 4683 1.781 0.848 - - - - - 0.933 - - SRY (sex determining region Y)-box 19a [Source:ZFIN;Acc:ZDB-GENE-980526-102]
65. csf1b ENSDARG00000068263 248 1.78 0.856 - - - - - 0.924 - - colony stimulating factor 1b (macrophage) [Source:ZFIN;Acc:ZDB-GENE-061215-106]
66. slc29a4 ENSDARG00000059690 478 1.778 - - - - - - 0.820 0.958 - solute carrier family 29 (equilibrative nucleoside transporter), member 4 [Source:ZFIN;Acc:ZDB-GENE-070112-1932]
67. EPB41L1 EPB41L1 1896 1.777 0.908 - - - - - 0.869 - -
68. nes ENSDARG00000088805 2710 1.777 0.830 - - - - - 0.947 - - nestin [Source:ZFIN;Acc:ZDB-GENE-071119-2]
69. cyfip2 ENSDARG00000036375, ENSDARG00000110155, ENSDARG00000114426 2788 1.775 0.888 - - - - - 0.887 - - cytoplasmic FMR1 interacting protein 2 [Source:ZFIN;Acc:ZDB-GENE-080724-2]
70. epha4b ENSDARG00000011600 3110 1.775 0.862 - - - - - 0.913 - - eph receptor A4b [Source:ZFIN;Acc:ZDB-GENE-030826-6]
71. CABZ01070258.1 ENSDARG00000105687 3643 1.774 0.865 - - - - - 0.909 - -
72. atp6v0cb ENSDARG00000036577 3472 1.774 0.823 - - - - - 0.951 - - ATPase H+ transporting V0 subunit cb [Source:ZFIN;Acc:ZDB-GENE-030131-4127]
73. CYTH2 ENSDARG00000028800 2349 1.774 - - - - - - 0.879 0.895 - cytohesin 2 [Source:HGNC Symbol;Acc:HGNC:9502]
74. tuba1c ENSDARG00000055216 8384 1.773 0.849 - - - - - 0.924 - - tubulin, alpha 1c [Source:ZFIN;Acc:ZDB-GENE-061114-1]
75. mbd3b ENSDARG00000042029, ENSDARG00000061810 4561 1.773 0.859 - - - - - 0.914 - - methyl-CpG binding domain protein 3b [Source:ZFIN;Acc:ZDB-GENE-030131-9792]
76. cdh2 ENSDARG00000018693, ENSDARG00000117201 9869 1.771 0.821 - - - - 0.950 - - - cadherin 2, type 1, N-cadherin (neuronal) [Source:ZFIN;Acc:ZDB-GENE-990415-171]
77. gpr144 gpr144 479 1.768 0.886 - - - - - 0.882 - -
78. atcaya ENSDARG00000071678 344 1.766 - - - - - - 0.814 0.952 - ataxia, cerebellar, Cayman type a [Source:ZFIN;Acc:ZDB-GENE-070705-185]
79. plp1a ENSDARG00000103732 3544 1.765 0.819 - - - - - 0.946 - - proteolipid protein 1a [Source:ZFIN;Acc:ZDB-GENE-001202-1]
80. nrxn3b ENSDARG00000062693 192 1.764 0.879 - - - - - 0.885 - - neurexin 3b [Source:ZFIN;Acc:ZDB-GENE-070206-10]
81. clvs2 ENSDARG00000053122 1390 1.764 0.825 - - - - - 0.939 - - clavesin 2 [Source:ZFIN;Acc:ZDB-GENE-041014-313]
82. sv2bb ENSDARG00000060711 196 1.762 0.837 - - - - - 0.925 - - synaptic vesicle glycoprotein 2Bb [Source:ZFIN;Acc:ZDB-GENE-030131-2789]
83. onecut1 ENSDARG00000007982, ENSDARG00000112251 6307 1.762 0.817 - - - - - 0.945 - - one cut homeobox 1 [Source:ZFIN;Acc:ZDB-GENE-040426-1469]
84. C8H1orf106 C8H1orf106 2690 1.758 0.856 - - - - - 0.902 - -
85. her13 ENSDARG00000007097 2000 1.758 0.825 - - - - - 0.933 - - hairy-related 13 [Source:ZFIN;Acc:ZDB-GENE-050228-1]
86. pacsin1b ENSDARG00000042128 1051 1.757 - - - - - - 0.889 0.868 - protein kinase C and casein kinase substrate in neurons 1b [Source:ZFIN;Acc:ZDB-GENE-050913-35]
87. tmem35 ENSDARG00000052567 5685 1.757 0.820 - - - - - 0.937 - - transmembrane protein 35 [Source:ZFIN;Acc:ZDB-GENE-030815-1]
88. cldn5a ENSDARG00000043716 3865 1.755 0.838 - - - - - 0.917 - - claudin 5a [Source:ZFIN;Acc:ZDB-GENE-040426-2442]
89. lhx1a ENSDARG00000014018 958 1.755 - - - - - - 0.819 0.936 - LIM homeobox 1a [Source:ZFIN;Acc:ZDB-GENE-980526-347]
90. atp6v0a2a ENSDARG00000035538 278 1.755 0.864 - - - - - 0.891 - - ATPase H+ transporting V0 subunit a2a [Source:ZFIN;Acc:ZDB-GENE-091113-4]
91. her12 ENSDARG00000032963 754 1.75 0.803 - - - - - 0.947 - - hairy-related 12 [Source:ZFIN;Acc:ZDB-GENE-040824-5]
92. fzd3a ENSDARG00000021664 1958 1.748 0.834 - - - - - 0.914 - - frizzled class receptor 3a [Source:ZFIN;Acc:ZDB-GENE-990415-225]
93. st8sia5 ENSDARG00000036584 529 1.747 0.838 - - - - - 0.909 - - ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 5 [Source:ZFIN;Acc:ZDB-GENE-060322-8]
94. clstn3 ENSDARG00000073883 590 1.747 0.885 - - - - - 0.862 - - calsyntenin 3 [Source:ZFIN;Acc:ZDB-GENE-100921-73]
95. celf4 ENSDARG00000070045 1537 1.745 0.808 - - - - - 0.937 - - CUGBP, Elav-like family member 4 [Source:ZFIN;Acc:ZDB-GENE-040718-300]
96. si:ch73-21g5.7 ENSDARG00000093156 9412 1.745 0.807 - - - - - 0.938 - - si:ch73-21g5.7 [Source:ZFIN;Acc:ZDB-GENE-081104-260]
97. tmem134 ENSDARG00000024828 3241 1.744 0.758 - - - - 0.986 - - - transmembrane protein 134 [Source:ZFIN;Acc:ZDB-GENE-040426-1345]
98. npas3b npas3b 1446 1.742 0.804 - - - - - 0.938 - -
99. her4.2_1 ENSDARG00000056729, ENSDARG00000094426 2383 1.741 0.815 - - - - - 0.926 - - hairy-related 4, tandem duplicate 2 [Source:ZFIN;Acc:ZDB-GENE-060815-1]
100. PLEKHG4 ENSDARG00000075964 2860 1.741 - - - - - 0.984 0.757 - - pleckstrin homology domain containing, family G (with RhoGef domain) member 4 [Source:ZFIN;Acc:ZDB-GENE-030131-4824]

There are 1793 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA