Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

Zebrafish data search


search
Exact
Search
Limit to:

{{libname.name}} 

Results for cpsf6

Gene Name Gene ID Reads Annotation
cpsf6 ENSDARG00000018618 3923 cleavage and polyadenylation specific factor 6 [Source:ZFIN;Acc:ZDB-GENE-030131-5277]










Genes with expression patterns similar to cpsf6

Nr. Gene Name Gene ID Reads Σ scores 28hpf trunk1 28hpf trunk2 28hpf whole1 28hpf whole2 28hpf whole3 PA 40hpf trunk1 40hpf trunk2 40hpf whole embryo1 40hpf whole embryo2 Annotation
1. cpsf6 ENSDARG00000018618 3923 9 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 cleavage and polyadenylation specific factor 6 [Source:ZFIN;Acc:ZDB-GENE-030131-5277]
2. dlb ENSDARG00000004232 5120 3.457 - - 0.933 - 0.797 0.971 - - 0.756 deltaB [Source:ZFIN;Acc:ZDB-GENE-980526-114]
3. vangl2 ENSDARG00000027397 2418 2.426 - - 0.917 - 0.720 - - - 0.789 VANGL planar cell polarity protein 2 [Source:ZFIN;Acc:ZDB-GENE-020507-3]
4. dla ENSDARG00000010791 9281 2.4 - - 0.787 - - 0.882 - - 0.731 deltaA [Source:ZFIN;Acc:ZDB-GENE-980526-29]
5. ubtf ENSDARG00000035066 4070 2.375 - - 0.929 - - - 0.726 - 0.720 upstream binding transcription factor [Source:ZFIN;Acc:ZDB-GENE-030616-252]
6. thrap3b ENSDARG00000098228 4396 2.356 - 0.734 0.840 - - - - - 0.782 thyroid hormone receptor associated protein 3b [Source:ZFIN;Acc:ZDB-GENE-040516-9]
7. TAF15 ENSDARG00000070019 5102 2.268 - - - - 0.790 - 0.741 - 0.737 TAF15 RNA polymerase II, TATA box binding protein (TBP)-associated factor [Source:ZFIN;Acc:ZDB-GENE-061215-102]
8. smarcd1 ENSDARG00000019004 6028 2.268 - - - 0.766 0.720 - 0.782 - - SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 1 [Source:ZFIN;Acc:ZDB-GENE-030131-1835]
9. top1l ENSDARG00000070545 40529 2.263 - - 0.836 0.725 - - 0.702 - - DNA topoisomerase I, like [Source:ZFIN;Acc:ZDB-GENE-060616-217]
10. snrpf ENSDARG00000105037 10241 2.258 - 0.755 - 0.745 - - 0.758 - - small nuclear ribonucleoprotein polypeptide F [Source:ZFIN;Acc:ZDB-GENE-040930-9]
11. dnmt3b dnmt3b 2522 2.232 - 0.738 - - - - 0.737 - 0.757
12. sephs1 ENSDARG00000058292 3347 2.213 - - - - 0.751 - 0.723 - 0.739 selenophosphate synthetase 1 [Source:ZFIN;Acc:ZDB-GENE-030131-3670]
13. hnrnpul1 ENSDARG00000040564 6550 1.931 - - 0.943 - - 0.988 - - - heterogeneous nuclear ribonucleoprotein U-like 1 [Source:ZFIN;Acc:ZDB-GENE-040426-2432]
14. nudt3a ENSDARG00000016256 2713 1.907 - - 0.910 - - 0.997 - - - nudix (nucleoside diphosphate linked moiety X)-type motif 3a [Source:ZFIN;Acc:ZDB-GENE-040426-792]
15. ptgs1 ENSDARG00000052148 2443 1.876 - - 0.882 - - 0.994 - - - prostaglandin-endoperoxide synthase 1 [Source:ZFIN;Acc:ZDB-GENE-020530-1]
16. ube2g2 ENSDARG00000025404 1774 1.874 - - 0.881 - - 0.993 - - - ubiquitin-conjugating enzyme E2G 2 (UBC7 homolog, yeast) [Source:ZFIN;Acc:ZDB-GENE-050417-288]
17. mcm2 ENSDARG00000102798 8148 1.811 - - - - - 0.994 - - 0.817 minichromosome maintenance complex component 2 [Source:ZFIN;Acc:ZDB-GENE-020419-24]
18. ewsr1a ENSDARG00000020258, ENSDARG00000113252 11221 1.773 - - - - - 0.986 - - 0.787 EWS RNA-binding protein 1a [Source:ZFIN;Acc:ZDB-GENE-030131-2317]
19. eprs ENSDARG00000060494 4729 1.764 - 0.770 - - - 0.994 - - - glutamyl-prolyl-tRNA synthetase [Source:ZFIN;Acc:ZDB-GENE-030131-638]
20. hnrnpk ENSDARG00000018914 8841 1.761 - - - - - 0.977 0.784 - - heterogeneous nuclear ribonucleoprotein K [Source:ZFIN;Acc:ZDB-GENE-040426-1926]
21. larp1b ENSDARG00000061169 9939 1.756 - 0.765 - - - 0.991 - - - La ribonucleoprotein domain family, member 1B [Source:ZFIN;Acc:ZDB-GENE-030131-4154]
22. RSF1 RSF1 1242 1.744 - - 0.920 - - - - - 0.824
23. fundc1 ENSDARG00000040822 2460 1.736 - - - - - 0.980 - - 0.756 FUN14 domain containing 1 [Source:ZFIN;Acc:ZDB-GENE-040718-466]
24. nudcd2 ENSDARG00000078059, ENSDARG00000109490 2234 1.73 - 0.733 - - - 0.997 - - - NudC domain containing 2 [Source:ZFIN;Acc:ZDB-GENE-040801-49]
25. icln icln 1279 1.726 - - - - - 0.997 0.729 - -
26. dld ENSDARG00000020219 4928 1.72 - - - - - 0.963 - - 0.757 deltaD [Source:ZFIN;Acc:ZDB-GENE-990415-47]
27. znf106a ENSDARG00000016651 6049 1.72 - - 0.754 - - 0.966 - - - zinc finger protein 106a [Source:ZFIN;Acc:ZDB-GENE-040718-21]
28. e2f4 ENSDARG00000101578, ENSDARG00000109320 1783 1.717 - - 0.924 - 0.793 - - - - E2F transcription factor 4 [Source:ZFIN;Acc:ZDB-GENE-040426-2773]
29. MIB1 ENSDARG00000102184 3285 1.715 - - - - - 0.996 0.719 - - mindbomb E3 ubiquitin protein ligase 1 [Source:ZFIN;Acc:ZDB-GENE-030404-2]
30. sart3 ENSDARG00000008032 2594 1.706 - - - - - 0.997 0.709 - - squamous cell carcinoma antigen recognized by T cells 3 [Source:ZFIN;Acc:ZDB-GENE-040724-10]
31. pebp1 ENSDARG00000042069 6651 1.698 - - - - 0.703 0.995 - - - phosphatidylethanolamine binding protein 1 [Source:ZFIN;Acc:ZDB-GENE-040426-2621]
32. AL844567.1 AL844567.1 1605 1.691 - - 0.918 - - - - - 0.773
33. nxf1 ENSDARG00000055076 3251 1.678 - - 0.953 - - - - - 0.725 nuclear RNA export factor 1 [Source:ZFIN;Acc:ZDB-GENE-030131-2585]
34. mcm5 ENSDARG00000019507 6407 1.674 - - 0.875 - - - - - 0.799 minichromosome maintenance complex component 5 [Source:ZFIN;Acc:ZDB-GENE-021209-1]
35. dennd5a ENSDARG00000017006 3426 1.671 - - 0.908 - - - - - 0.763 DENN/MADD domain containing 5A [Source:ZFIN;Acc:ZDB-GENE-071211-1]
36. fbxw11b ENSDARG00000017230, ENSDARG00000112841 2593 1.669 - - 0.918 - - - 0.751 - - F-box and WD repeat domain containing 11b [Source:ZFIN;Acc:ZDB-GENE-040426-2903]
37. carm1 ENSDARG00000018698 5599 1.666 - - 0.930 - 0.736 - - - - coactivator-associated arginine methyltransferase 1 [Source:ZFIN;Acc:ZDB-GENE-040724-77]
38. med13b ENSDARG00000003910 1143 1.661 - - 0.906 - - - 0.755 - - mediator complex subunit 13b [Source:ZFIN;Acc:ZDB-GENE-030131-3529]
39. sox3 ENSDARG00000053569 12016 1.661 - - - - - 0.946 - - 0.715 SRY (sex determining region Y)-box 3 [Source:ZFIN;Acc:ZDB-GENE-980526-333]
40. prpf38b ENSDARG00000053101 1785 1.661 - - 0.852 - - - - - 0.809 pre-mRNA processing factor 38B [Source:ZFIN;Acc:ZDB-GENE-040426-2878]
41. ube2g1a ENSDARG00000015292, ENSDARG00000112281 3207 1.659 - - 0.854 - - - - - 0.805 ubiquitin-conjugating enzyme E2G 1a (UBC7 homolog, yeast) [Source:ZFIN;Acc:ZDB-GENE-030131-6065]
42. GATAD2B ENSDARG00000005834 3855 1.651 - - 0.899 - - - - - 0.752 GATA zinc finger domain containing 2B [Source:ZFIN;Acc:ZDB-GENE-060503-655]
43. nol9 ENSDARG00000077751 2471 1.644 - - 0.932 - - - 0.712 - - nucleolar protein 9 [Source:ZFIN;Acc:ZDB-GENE-070629-1]
44. rqcd1 2301 1.641 - 0.717 0.924 - - - - - - RCD1 required for cell differentiation1 homolog (S. pombe)
45. cdc6 ENSDARG00000009942, ENSDARG00000109602 2540 1.64 - - 0.932 - - - - - 0.708 cell division cycle 6 homolog (S. cerevisiae) [Source:ZFIN;Acc:ZDB-GENE-050506-131]
46. zbtb18 ENSDARG00000028228 3653 1.638 - 0.711 0.927 - - - - - - zinc finger and BTB domain containing 18 [Source:ZFIN;Acc:ZDB-GENE-050419-73]
47. znf598 ENSDARG00000014945 1838 1.637 - - 0.925 - - - 0.712 - - zinc finger protein 598 [Source:ZFIN;Acc:ZDB-GENE-060602-3]
48. arpp19b ENSDARG00000039880 4823 1.635 - - 0.915 - - - - - 0.720 cAMP-regulated phosphoprotein 19b [Source:ZFIN;Acc:ZDB-GENE-040426-930]
49. coe2 coe2 1633 1.633 - - 0.927 - - - - - 0.706
50. psmb6 ENSDARG00000002240 8015 1.632 - 0.779 - - - - - - 0.853 proteasome subunit beta 6 [Source:ZFIN;Acc:ZDB-GENE-990415-216]
51. CEP350 ENSDARG00000058000 2887 1.63 - 0.708 0.922 - - - - - - centrosomal protein 350 [Source:ZFIN;Acc:ZDB-GENE-030131-6975]
52. taf1 ENSDARG00000035330 912 1.623 - - 0.916 - - - 0.707 - - TAF1 RNA polymerase II, TATA box binding protein (TBP)-associated factor [Source:ZFIN;Acc:ZDB-GENE-030131-5576]
53. fzr1 fzr1 2984 1.622 - - 0.911 - - - - - 0.711
54. srp19 ENSDARG00000035699 2624 1.616 - - 0.910 - - - 0.706 - - signal recognition particle 19 [Source:ZFIN;Acc:ZDB-GENE-040426-2657]
55. JMJD1C_1 JMJD1C_1 3094 1.608 - - 0.903 - - - 0.705 - -
56. chaf1a ENSDARG00000062152, ENSDARG00000114749 5342 1.606 - - 0.898 - - - 0.708 - - chromatin assembly factor 1, subunit A (p150) [Source:ZFIN;Acc:ZDB-GENE-030131-5366]
57. KIAA0355 3250 1.604 - 0.706 0.898 - - - - - - KIAA0355 ortholog, transcript variant X1
58. gspt1l ENSDARG00000098627 8381 1.604 - 0.849 - - - - 0.755 - - G1 to S phase transition 1, like [Source:ZFIN;Acc:ZDB-GENE-030131-4009]
59. plcg1 ENSDARG00000038442 5324 1.594 0.779 0.815 - - - - - - - phospholipase C, gamma 1 [Source:ZFIN;Acc:ZDB-GENE-030421-3]
60. ssbp4 ENSDARG00000056483 10196 1.594 0.756 - - - - - 0.838 - - single stranded DNA binding protein 4 [Source:ZFIN;Acc:ZDB-GENE-030131-469]
61. uba1 ENSDARG00000037559 11579 1.589 - - - - 0.791 - 0.798 - - ubiquitin-like modifier activating enzyme 1 [Source:ZFIN;Acc:ZDB-GENE-040426-2009]
62. ogt.1 ENSDARG00000099455, ENSDARG00000105243 3274 1.588 - 0.823 - - - - - - 0.765 O-linked N-acetylglucosamine (GlcNAc) transferase, tandem duplicate 1 [Source:ZFIN;Acc:ZDB-GENE-030131-9631]
63. arih2 ENSDARG00000012848 7087 1.585 - - 0.810 - - - 0.775 - - ariadne homolog 2 (Drosophila) [Source:ZFIN;Acc:ZDB-GENE-040426-2158]
64. ilf3b ENSDARG00000105177 9473 1.585 - - 0.790 - - - 0.795 - - interleukin enhancer binding factor 3b [Source:ZFIN;Acc:ZDB-GENE-030131-587]
65. yth2 yth2 3716 1.577 - - - - 0.754 - 0.823 - -
66. dusp8a ENSDARG00000009299 1302 1.576 - - - - - - 0.848 - 0.728 dual specificity phosphatase 8a [Source:ZFIN;Acc:ZDB-GENE-040426-1842]
67. rbb4l ENSDARG00000015208 5542 1.575 - 0.854 - - 0.721 - - - - retinoblastoma binding protein 4, like [Source:ZFIN;Acc:ZDB-GENE-030131-848]
68. srsf6b ENSDARG00000016783 9926 1.573 - - - - 0.776 - 0.797 - - serine/arginine-rich splicing factor 6b [Source:ZFIN;Acc:ZDB-GENE-041219-1]
69. cdc14b ENSDARG00000021483 4958 1.571 - - 0.796 - - - - - 0.775 cell division cycle 14B [Source:ZFIN;Acc:ZDB-GENE-040426-820]
70. ap1s2 ENSDARG00000058504, ENSDARG00000114515 6499 1.566 0.707 - 0.859 - - - - - - adaptor related protein complex 1 subunit sigma 2 [Source:ZFIN;Acc:ZDB-GENE-030131-5448]
71. oxsr1a ENSDARG00000034189 4314 1.564 - 0.719 - - - - 0.845 - - oxidative stress responsive 1a [Source:ZFIN;Acc:ZDB-GENE-070620-25]
72. kansl2 ENSDARG00000056318, ENSDARG00000113311 4702 1.564 - - - - - - 0.766 - 0.798 KAT8 regulatory NSL complex subunit 2 [Source:ZFIN;Acc:ZDB-GENE-041010-67]
73. psmb7 ENSDARG00000037962 11542 1.561 - 0.818 - - - - - - 0.743 proteasome subunit beta 7 [Source:ZFIN;Acc:ZDB-GENE-001208-4]
74. aco2 ENSDARG00000007294, ENSDARG00000111879 5162 1.558 - 0.728 0.830 - - - - - - aconitase 2, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-030131-1390]
75. sumo3a ENSDARG00000028119 13447 1.555 - - - - - - 0.809 - 0.746 small ubiquitin-like modifier 3a [Source:ZFIN;Acc:ZDB-GENE-040426-2133]
76. hnrpl 6412 1.549 - - - - - - 0.774 - 0.775 heterogeneous nuclear ribonucleoprotein L, transcript variant X1
77. hk1 ENSDARG00000039452, ENSDARG00000110447, ENSDARG00000112051 5026 1.546 - 0.773 - - - - 0.773 - - hexokinase 1 [Source:ZFIN;Acc:ZDB-GENE-040426-2848]
78. smc1al ENSDARG00000058203 8838 1.546 - 0.778 - - - - - - 0.768 structural maintenance of chromosomes 1A, like [Source:ZFIN;Acc:ZDB-GENE-040426-57]
79. TRAK2 ENSDARG00000102471 2258 1.54 - 0.737 - - - - - - 0.803 trafficking protein, kinesin binding 2 [Source:ZFIN;Acc:ZDB-GENE-030131-7496]
80. hmgb3a ENSDARG00000056725 15668 1.536 0.813 - - - 0.723 - - - - high mobility group box 3a [Source:ZFIN;Acc:ZDB-GENE-050428-1]
81. stmn1a ENSDARG00000004169 21169 1.535 - - - - - - 0.757 - 0.778 stathmin 1a [Source:ZFIN;Acc:ZDB-GENE-031006-14]
82. hnrnpub ENSDARG00000004735 16496 1.535 0.775 - - - - - - - 0.760 heterogeneous nuclear ribonucleoprotein Ub [Source:ZFIN;Acc:ZDB-GENE-030131-6422]
83. SEC24A ENSDARG00000104375 2614 1.521 - 0.723 0.798 - - - - - - SEC24 homolog A, COPII coat complex component [Source:ZFIN;Acc:ZDB-GENE-120926-1]
84. hmgb1a ENSDARG00000099175, ENSDARG00000114353 17231 1.521 - - - - - 0.799 - - 0.722 high mobility group box 1a [Source:ZFIN;Acc:ZDB-GENE-030131-341]
85. ankrd12 ENSDARG00000052419 2579 1.518 - 0.796 - - - - - - 0.722 ankyrin repeat domain 12 [Source:ZFIN;Acc:ZDB-GENE-040426-846]
86. hira ENSDARG00000013434 2204 1.517 - - - - 0.732 - - - 0.785 histone cell cycle regulator a [Source:ZFIN;Acc:ZDB-GENE-030131-6296]
87. si:dkeyp-44a8.2 ENSDARG00000092493 8308 1.516 - - - - - - 0.807 - 0.709 si:dkeyp-44a8.2 [Source:ZFIN;Acc:ZDB-GENE-070705-542]
88. tubb5 ENSDARG00000037997 18691 1.513 - - 0.770 0.743 - - - - - tubulin, beta 5 [Source:ZFIN;Acc:ZDB-GENE-031110-4]
89. prpf40a ENSDARG00000058467 6565 1.512 - - - - - - 0.755 - 0.757 PRP40 pre-mRNA processing factor 40 homolog A [Source:ZFIN;Acc:ZDB-GENE-030131-274]
90. brd1b ENSDARG00000051798 1712 1.511 - 0.781 - - - - - - 0.730 bromodomain containing 1b [Source:ZFIN;Acc:ZDB-GENE-070209-98]
91. akirin1 ENSDARG00000039969, ENSDARG00000116670 2533 1.509 - - - - - - 0.712 - 0.797 akirin 1 [Source:ZFIN;Acc:ZDB-GENE-040426-2178]
92. rbmx ENSDARG00000014244 3445 1.509 - - - - - - 0.743 - 0.766 RNA binding motif protein X-linked [Source:ZFIN;Acc:ZDB-GENE-030131-579]
93. tmem35 ENSDARG00000052567 5685 1.508 0.714 - - - - - - - 0.794 transmembrane protein 35 [Source:ZFIN;Acc:ZDB-GENE-030815-1]
94. anp32e ENSDARG00000054804 11017 1.508 - - - - - 0.778 0.730 - - acidic (leucine-rich) nuclear phosphoprotein 32 family, member E [Source:ZFIN;Acc:ZDB-GENE-040426-2448]
95. whsc1 1701 1.506 - - - - 0.758 - - - 0.748 Wolf-Hirschhorn syndrome candidate 1
96. map1lc3b ENSDARG00000101127 3958 1.503 - - - - - - 0.768 0.735 - microtubule-associated protein 1 light chain 3 beta [Source:ZFIN;Acc:ZDB-GENE-030131-1145]
97. usp10 ENSDARG00000103422 4247 1.499 - - - - - - 0.762 0.737 - ubiquitin specific peptidase 10 [Source:ZFIN;Acc:ZDB-GENE-030219-132]
98. cdk6 ENSDARG00000070228 1778 1.498 - - - - - - 0.788 - 0.710 cyclin-dependent kinase 6 [Source:ZFIN;Acc:ZDB-GENE-060503-786]
99. sumo3b ENSDARG00000035993 3414 1.495 - 0.782 - - 0.713 - - - - small ubiquitin-like modifier 3b [Source:ZFIN;Acc:ZDB-GENE-040718-426]
100. myef2 ENSDARG00000059398 6050 1.495 - - - - 0.733 - - - 0.762 myelin expression factor 2 [Source:ZFIN;Acc:ZDB-GENE-051120-114]

There are 1037 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA