Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

Zebrafish data search


search
Exact
Search
Limit to:

{{libname.name}} 

Results for col16a1

Gene Name Gene ID Reads Annotation
col16a1 ENSDARG00000009194 5600 collagen, type XVI, alpha 1 [Source:ZFIN;Acc:ZDB-GENE-060503-351]










Genes with expression patterns similar to col16a1

Nr. Gene Name Gene ID Reads Σ scores 28hpf trunk1 28hpf trunk2 28hpf whole1 28hpf whole2 28hpf whole3 PA 40hpf trunk1 40hpf trunk2 40hpf whole embryo1 40hpf whole embryo2 Annotation
1. col16a1 ENSDARG00000009194 5600 9 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 collagen, type XVI, alpha 1 [Source:ZFIN;Acc:ZDB-GENE-060503-351]
2. maf1 ENSDARG00000013122 3365 2.628 - 0.804 - - 0.967 - - - 0.857 MAF1 homolog, negative regulator of RNA polymerase III [Source:ZFIN;Acc:ZDB-GENE-040426-2788]
3. commd4 ENSDARG00000061946 3281 2.614 - 0.784 - - 0.978 - - - 0.852 COMM domain containing 4 [Source:ZFIN;Acc:ZDB-GENE-060929-600]
4. rab11a ENSDARG00000041450, ENSDARG00000109465 7418 2.611 - - 0.907 - 0.925 - 0.779 - - RAB11a, member RAS oncogene family [Source:ZFIN;Acc:ZDB-GENE-041114-53]
5. KRT18 ENSDARG00000018404, ENSDARG00000109528 6022 2.514 - 0.857 0.916 - - 0.741 - - - keratin 18 [Source:ZFIN;Acc:ZDB-GENE-030411-6]
6. fkbp8 ENSDARG00000001734 1709 2.497 - - 0.929 - - - 0.739 - 0.829 FK506 binding protein 8 [Source:ZFIN;Acc:ZDB-GENE-040426-1849]
7. npc1 ENSDARG00000017180 3724 2.472 - - - - 0.950 0.770 0.752 - - Niemann-Pick disease, type C1 [Source:ZFIN;Acc:ZDB-GENE-030131-3161]
8. arpc1a ENSDARG00000008383 7353 2.458 - 0.727 - - 0.967 0.764 - - - actin related protein 2/3 complex, subunit 1A [Source:ZFIN;Acc:ZDB-GENE-040116-1]
9. adssl1 ENSDARG00000099517 7518 2.449 - 0.787 - - 0.950 - - - 0.712 adenylosuccinate synthase like 1 [Source:ZFIN;Acc:ZDB-GENE-040516-18]
10. sgms1 ENSDARG00000029621 6376 2.447 - - 0.804 - 0.811 0.832 - - - sphingomyelin synthase 1 [Source:ZFIN;Acc:ZDB-GENE-061103-295]
11. tln1 ENSDARG00000100729 5744 2.435 - 0.720 - - - 0.920 0.795 - - talin 1 [Source:ZFIN;Acc:ZDB-GENE-031002-48]
12. cpsf3 ENSDARG00000027649 6897 2.434 - - 0.720 - 0.895 - - - 0.819 cleavage and polyadenylation specific factor 3 [Source:ZFIN;Acc:ZDB-GENE-030131-3275]
13. C16H1orf172 C16H1orf172 909 2.431 - 0.731 0.923 - - 0.777 - - -
14. taldo1 ENSDARG00000103369 3804 2.416 - - 0.883 - - 0.739 0.794 - - transaldolase 1 [Source:ZFIN;Acc:ZDB-GENE-030131-3277]
15. necap2 ENSDARG00000046002 4372 2.373 - 0.812 - - - 0.707 - - 0.854 NECAP endocytosis associated 2 [Source:ZFIN;Acc:ZDB-GENE-050522-67]
16. fastk ENSDARG00000077075 1619 2.346 - 0.785 - - - - 0.730 - 0.831 Fas-activated serine/threonine kinase [Source:ZFIN;Acc:ZDB-GENE-070912-680]
17. gapdhs ENSDARG00000039914 8760 2.313 - 0.752 - - - - 0.821 - 0.740 glyceraldehyde-3-phosphate dehydrogenase, spermatogenic [Source:ZFIN;Acc:ZDB-GENE-020913-1]
18. ppdpfb ENSDARG00000031317 12820 2.239 - - - - - 0.718 0.785 - 0.736 pancreatic progenitor cell differentiation and proliferation factor b [Source:ZFIN;Acc:ZDB-GENE-030131-8247]
19. sema3fa ENSDARG00000011163 759 1.898 - - 0.918 - 0.980 - - - - sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3Fa [Source:ZFIN;Acc:ZDB-GENE-050513-1]
20. timm10 ENSDARG00000069116 4459 1.834 - - - - 0.958 - - - 0.876 translocase of inner mitochondrial membrane 10 homolog (yeast) [Source:ZFIN;Acc:ZDB-GENE-040718-427]
21. atp1a1a.1 ENSDARG00000002791 7392 1.834 - - 0.898 - - - 0.936 - - ATPase Na+/K+ transporting subunit alpha 1a, tandem duplicate 1 [Source:ZFIN;Acc:ZDB-GENE-001212-1]
22. git2b ENSDARG00000042791, ENSDARG00000111846 1332 1.823 - - - - 0.978 - - - 0.845 G protein-coupled receptor kinase interacting ArfGAP 2b [Source:ZFIN;Acc:ZDB-GENE-070112-2192]
23. galnt7 ENSDARG00000057303 2017 1.796 - - - - 0.969 0.827 - - - UDP-N-acetyl-alpha-D-galactosamine: polypeptide N-acetylgalactosaminyltransferase 7 [Source:ZFIN;Acc:ZDB-GENE-050522-284]
24. adam10a ENSDARG00000053468 9308 1.795 - - 0.890 - - 0.905 - - - ADAM metallopeptidase domain 10a [Source:ZFIN;Acc:ZDB-GENE-040917-2]
25. CCDC71 CCDC71 2442 1.795 - - - - 0.975 - - - 0.820
26. GUSB ENSDARG00000063126 2712 1.79 - 0.855 0.935 - - - - - - glucuronidase, beta [Source:ZFIN;Acc:ZDB-GENE-070705-256]
27. notch2 ENSDARG00000043130 4430 1.788 - - - - 0.946 0.842 - - - notch 2 [Source:ZFIN;Acc:ZDB-GENE-000329-4]
28. ppa1b ENSDARG00000030441 9027 1.786 - - - - 0.907 - - - 0.879 pyrophosphatase (inorganic) 1b [Source:ZFIN;Acc:ZDB-GENE-050417-375]
29. arl14ep ENSDARG00000001210 3029 1.768 - - - - 0.962 - - - 0.806 ADP-ribosylation factor-like 14 effector protein [Source:ZFIN;Acc:ZDB-GENE-060825-216]
30. pak2a ENSDARG00000068177 8931 1.766 - - - - 0.933 0.833 - - - p21 protein (Cdc42/Rac)-activated kinase 2a [Source:ZFIN;Acc:ZDB-GENE-021011-2]
31. GPA33 2465 1.764 - - - - 0.963 0.801 - - - glycoprotein A33 (transmembrane)
32. zgc:85777 ENSDARG00000027009, ENSDARG00000112673 1499 1.763 - - 0.922 - - - - - 0.841 zgc:85777 [Source:ZFIN;Acc:ZDB-GENE-040426-2210]
33. atp1b1b ENSDARG00000076833 10324 1.731 - - - - - 0.873 0.858 - - ATPase Na+/K+ transporting subunit beta 1b [Source:ZFIN;Acc:ZDB-GENE-001127-4]
34. CABZ01059390.1 CABZ01059390.1 4340 1.73 - - - - 0.937 - 0.793 - -
35. ptbp1a ENSDARG00000019362 6290 1.723 - 0.875 0.848 - - - - - - polypyrimidine tract binding protein 1a [Source:ZFIN;Acc:ZDB-GENE-050522-492]
36. cyfip1 ENSDARG00000044345 5483 1.717 - - - - - 0.877 - - 0.840 cytoplasmic FMR1 interacting protein 1 [Source:ZFIN;Acc:ZDB-GENE-030131-8557]
37. arhgdia ENSDARG00000043795 14642 1.717 - - - - 0.939 - - - 0.778 Rho GDP dissociation inhibitor (GDI) alpha [Source:ZFIN;Acc:ZDB-GENE-040426-2816]
38. itga5 ENSDARG00000006353 1876 1.717 - 0.738 - - 0.979 - - - - integrin, alpha 5 (fibronectin receptor, alpha polypeptide) [Source:ZFIN;Acc:ZDB-GENE-031116-52]
39. iars2 ENSDARG00000044134 1990 1.711 - 0.735 - - 0.976 - - - - isoleucyl-tRNA synthetase 2, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-030616-608]
40. ptpn13 ENSDARG00000103699 2866 1.709 - - 0.901 - - - - - 0.808 protein tyrosine phosphatase, non-receptor type 13 [Source:ZFIN;Acc:ZDB-GENE-070410-72]
41. snrpe ENSDARG00000033175 7462 1.707 - - - - 0.969 - - - 0.738 small nuclear ribonucleoprotein polypeptide E [Source:ZFIN;Acc:ZDB-GENE-040426-1112]
42. ranbp9 ENSDARG00000061048 2687 1.706 - 0.780 0.926 - - - - - - RAN binding protein 9 [Source:ZFIN;Acc:ZDB-GENE-021030-5]
43. kansl2 ENSDARG00000056318, ENSDARG00000113311 4702 1.705 - 0.801 0.904 - - - - - - KAT8 regulatory NSL complex subunit 2 [Source:ZFIN;Acc:ZDB-GENE-041010-67]
44. lman2 ENSDARG00000061854 6251 1.7 - - - - 0.835 - - - 0.865 lectin, mannose-binding 2 [Source:ZFIN;Acc:ZDB-GENE-070209-149]
45. eif4ebp3l ENSDARG00000041607 5257 1.691 - - - - - - 0.835 - 0.856 eukaryotic translation initiation factor 4E binding protein 3, like [Source:ZFIN;Acc:ZDB-GENE-030826-26]
46. cmip ENSDARG00000062933 4521 1.688 - - 0.886 - - - - - 0.802 c-Maf inducing protein [Source:ZFIN;Acc:ZDB-GENE-050419-50]
47. s100v1 ENSDARG00000070427 6633 1.685 - - - - 0.959 0.726 - - - S100 calcium binding protein V1 [Source:ZFIN;Acc:ZDB-GENE-080407-1]
48. slc1a5 ENSDARG00000099186 7580 1.684 - - 0.918 - - - - - 0.766 solute carrier family 1 (neutral amino acid transporter), member 5 [Source:ZFIN;Acc:ZDB-GENE-070501-4]
49. anxa11b ENSDARG00000002632 5132 1.678 - - - - - 0.826 - - 0.852 annexin A11b [Source:ZFIN;Acc:ZDB-GENE-030707-5]
50. gdi1 ENSDARG00000056122 4106 1.676 - 0.766 0.910 - - - - - - GDP dissociation inhibitor 1 [Source:ZFIN;Acc:ZDB-GENE-050522-504]
51. abi1a ENSDARG00000010155 5631 1.676 - - - - - - 0.831 - 0.845 abl-interactor 1a [Source:ZFIN;Acc:ZDB-GENE-040426-1701]
52. anxa2a ENSDARG00000003216 10684 1.675 - 0.808 0.867 - - - - - - annexin A2a [Source:ZFIN;Acc:ZDB-GENE-030131-4282]
53. hcfc1b ENSDARG00000012519 3633 1.674 - 0.717 - - 0.957 - - - - host cell factor C1b [Source:ZFIN;Acc:ZDB-GENE-030131-2411]
54. hn1l hn1l 8861 1.673 - - - - - 0.800 - - 0.873
55. lsm4 ENSDARG00000023852 6083 1.669 - - - - 0.917 - 0.752 - - LSM4 homolog, U6 small nuclear RNA and mRNA degradation associated [Source:ZFIN;Acc:ZDB-GENE-040426-1652]
56. slc20a2 ENSDARG00000060796, ENSDARG00000113613 5420 1.667 - - 0.886 - - - - - 0.781 solute carrier family 20 (phosphate transporter), member 2 [Source:ZFIN;Acc:ZDB-GENE-060929-828]
57. tomm7 ENSDARG00000067717 4452 1.667 - - - - 0.945 - 0.722 - - translocase of outer mitochondrial membrane 7 homolog (yeast) [Source:ZFIN;Acc:ZDB-GENE-060825-115]
58. rpa1 ENSDARG00000003938 4403 1.662 - - - - - - 0.866 - 0.796 replication protein A1 [Source:ZFIN;Acc:ZDB-GENE-030912-3]
59. yy1a ENSDARG00000042796 4982 1.657 - 0.795 0.862 - - - - - - YY1 transcription factor a [Source:ZFIN;Acc:ZDB-GENE-030131-1117]
60. cln6a ENSDARG00000077584 1090 1.656 - 0.742 0.914 - - - - - - CLN6, transmembrane ER protein a [Source:ZFIN;Acc:ZDB-GENE-041010-57]
61. tnikb ENSDARG00000009031 1836 1.645 - 0.840 - - - 0.805 - - - TRAF2 and NCK interacting kinase b [Source:ZFIN;Acc:ZDB-GENE-051113-320]
62. shc1 ENSDARG00000075437 3278 1.639 - 0.732 - - - 0.907 - - - SHC (Src homology 2 domain containing) transforming protein 1 [Source:ZFIN;Acc:ZDB-GENE-030131-2538]
63. nrg1 ENSDARG00000104314 1081 1.637 - 0.718 0.919 - - - - - - neuregulin 1 [Source:ZFIN;Acc:ZDB-GENE-050302-113]
64. lnx1 ENSDARG00000043323, ENSDARG00000113875 1199 1.633 - - - - - 0.817 - - 0.816 ligand of numb-protein X 1 [Source:ZFIN;Acc:ZDB-GENE-030131-9439]
65. zgc:56530 zgc:56530 6300 1.632 - - - - - 0.892 - - 0.740
66. cdc42bpb ENSDARG00000019383 5976 1.63 - - - - - 0.852 0.778 - - CDC42 binding protein kinase beta (DMPK-like) [Source:ZFIN;Acc:ZDB-GENE-030131-3647]
67. id2a ENSDARG00000055283 7428 1.628 - - 0.859 - - - 0.769 - - inhibitor of DNA binding 2a [Source:ZFIN;Acc:ZDB-GENE-020910-1]
68. zfand5b ENSDARG00000002271 4145 1.625 - 0.786 - - - - - - 0.839 zinc finger, AN1-type domain 5b [Source:ZFIN;Acc:ZDB-GENE-040426-875]
69. sult2st1_1 ENSDARG00000033170 3074 1.623 - 0.755 - - - 0.868 - - - sulfotransferase family 2, cytosolic sulfotransferase 1 [Source:ZFIN;Acc:ZDB-GENE-030219-114]
70. WDR1 ENSDARG00000114022 7532 1.617 - - - - - 0.828 0.789 - - WD repeat domain 1 [Source:HGNC Symbol;Acc:HGNC:12754]
71. ch1073-291c23.1 2426 1.617 - - - - - 0.851 - - 0.766 ch1073-291c23.1, transcript variant X6
72. rrbp1a ENSDARG00000013763 4723 1.615 - 0.796 0.819 - - - - - - ribosome binding protein 1a [Source:ZFIN;Acc:ZDB-GENE-030131-9795]
73. atp1b3a ENSDARG00000015790 12310 1.612 - - - - - 0.859 0.753 - - ATPase Na+/K+ transporting subunit beta 3a [Source:ZFIN;Acc:ZDB-GENE-990415-167]
74. cp ENSDARG00000010312 1245 1.61 - - - - - 0.781 0.829 - - ceruloplasmin [Source:ZFIN;Acc:ZDB-GENE-010522-1]
75. jak2b ENSDARG00000018882 1141 1.608 - 0.764 - - - 0.844 - - - Janus kinase 2b [Source:ZFIN;Acc:ZDB-GENE-980526-123]
76. mllt10 ENSDARG00000045401 7557 1.607 - 0.708 - - 0.899 - - - - MLLT10, histone lysine methyltransferase DOT1L cofactor [Source:ZFIN;Acc:ZDB-GENE-041114-176]
77. si:ch211-10d23.5 ENSDARG00000095510 2632 1.606 - 0.766 - - - - - - 0.840 si:ch211-10d23.5 [Source:ZFIN;Acc:ZDB-GENE-090313-10]
78. pycard ENSDARG00000040076 3956 1.604 - - - - - 0.728 0.876 - - PYD and CARD domain containing [Source:ZFIN;Acc:ZDB-GENE-000511-2]
79. cad ENSDARG00000041895 4977 1.604 - - - - 0.799 - 0.805 - - carbamoyl-phosphate synthetase 2, aspartate transcarbamylase, and dihydroorotase [Source:ZFIN;Acc:ZDB-GENE-021030-4]
80. glud1a ENSDARG00000008816, ENSDARG00000114252 3468 1.6 - - - - - 0.715 0.885 - - glutamate dehydrogenase 1a [Source:ZFIN;Acc:ZDB-GENE-030114-2]
81. nap1l4b ENSDARG00000068868 3285 1.59 - 0.752 - - - - - - 0.838 nucleosome assembly protein 1-like 4b [Source:ZFIN;Acc:ZDB-GENE-041114-168]
82. pcbp2 ENSDARG00000099039 4248 1.588 - 0.726 - - - - 0.862 - - poly(rC) binding protein 2 [Source:ZFIN;Acc:ZDB-GENE-030131-563]
83. znf296 ENSDARG00000077897 658 1.588 - - - - - - 0.742 - 0.846 zinc finger protein 296 [Source:ZFIN;Acc:ZDB-GENE-050419-201]
84. tm9sf2 ENSDARG00000003866, ENSDARG00000115213 3888 1.587 - - - - - 0.792 - - 0.795 transmembrane 9 superfamily member 2 [Source:ZFIN;Acc:ZDB-GENE-030131-6302]
85. CORO1C CORO1C 5554 1.583 - - 0.869 - - - 0.714 - -
86. tpd52l2b ENSDARG00000013655 9460 1.58 - - - - - 0.775 - - 0.805 tumor protein D52-like 2b [Source:ZFIN;Acc:ZDB-GENE-030131-822]
87. C18H12orf23 C18H12orf23 5362 1.579 - 0.717 - - - - - - 0.862
88. arpc4l ENSDARG00000058225 10107 1.575 - - - - - 0.829 - - 0.746 actin related protein 2/3 complex, subunit 4, like [Source:ZFIN;Acc:ZDB-GENE-040808-18]
89. prpf8 ENSDARG00000026180 7026 1.574 - 0.820 - - - - 0.754 - - pre-mRNA processing factor 8 [Source:ZFIN;Acc:ZDB-GENE-030131-577]
90. sb:cb252 sb:cb252 2480 1.572 - - 0.804 - - 0.768 - - -
91. ptplb ptplb 6135 1.567 0.706 - 0.861 - - - - - -
92. col12a1b ENSDARG00000019601 9985 1.565 0.790 - - - 0.775 - - - - collagen, type XII, alpha 1b [Source:ZFIN;Acc:ZDB-GENE-120215-116]
93. lrba ENSDARG00000031108 2136 1.565 - - - - - 0.759 0.806 - - LPS-responsive vesicle trafficking, beach and anchor containing [Source:ZFIN;Acc:ZDB-GENE-090311-19]
94. actn1 ENSDARG00000007219 2919 1.562 - 0.777 - - - - 0.785 - - actinin, alpha 1 [Source:ZFIN;Acc:ZDB-GENE-081113-4]
95. ccdc22 ENSDARG00000052379 2276 1.562 - - - - - - 0.725 - 0.837 coiled-coil domain containing 22 [Source:ZFIN;Acc:ZDB-GENE-050913-93]
96. ensab ENSDARG00000061644 2436 1.56 - - - - - 0.722 - - 0.838 endosulfine alpha b [Source:ZFIN;Acc:ZDB-GENE-060526-294]
97. prdx5 ENSDARG00000055064 27445 1.559 - - - - - 0.801 0.758 - - peroxiredoxin 5 [Source:ZFIN;Acc:ZDB-GENE-050522-159]
98. nufip2 ENSDARG00000069066 3965 1.558 - - - - - 0.773 - - 0.785 nuclear fragile X mental retardation protein interacting protein 2 [Source:ZFIN;Acc:ZDB-GENE-041111-7]
99. syngr2a ENSDARG00000052429 3431 1.553 - 0.772 - - - 0.781 - - - synaptogyrin 2a [Source:ZFIN;Acc:ZDB-GENE-070112-1292]
100. ST7 ENSDARG00000039960, ENSDARG00000112691 2020 1.553 0.766 0.787 - - - - - - - suppression of tumorigenicity 7 [Source:ZFIN;Acc:ZDB-GENE-060421-2807]

There are 1429 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA