Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

Zebrafish data search


search
Exact
Search
Limit to:

{{libname.name}} 

Results for ccdc88b

Gene Name Gene ID Reads Annotation
ccdc88b ENSDARG00000076189 123 coiled-coil domain containing 88B [Source:ZFIN;Acc:ZDB-GENE-080303-31]










Genes with expression patterns similar to ccdc88b

Nr. Gene Name Gene ID Reads Σ scores 28hpf trunk1 28hpf trunk2 28hpf whole1 28hpf whole2 28hpf whole3 PA 40hpf trunk1 40hpf trunk2 40hpf whole embryo1 40hpf whole embryo2 Annotation
1. ccdc88b ENSDARG00000076189 123 9 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 coiled-coil domain containing 88B [Source:ZFIN;Acc:ZDB-GENE-080303-31]
2. nrip2 ENSDARG00000079985 505 1.749 0.858 - - - - - 0.891 - - nuclear receptor interacting protein 2 [Source:ZFIN;Acc:ZDB-GENE-030131-9425]
3. vasa vasa 64 1.736 0.851 - - - - - 0.885 - -
4. AL954146.5 AL954146.5 202 1.663 - 0.830 - - - - 0.833 - -
5. CT955987.1 CT955987.1 9 1.648 0.889 - 0.759 - - - - - -
6. f2r ENSDARG00000060012 235 1.637 - - - - - - 0.834 0.803 - coagulation factor II (thrombin) receptor [Source:ZFIN;Acc:ZDB-GENE-060526-30]
7. syne3 ENSDARG00000023237 23 1.628 - 0.898 - - - - 0.730 - - spectrin repeat containing, nuclear envelope family member 3 [Source:ZFIN;Acc:ZDB-GENE-070209-271]
8. SLC3A2 SLC3A2 135 1.626 0.855 - - - - - 0.771 - -
9. CT573239.1 ENSDARG00000105292 247 1.622 - 0.792 - - - - 0.830 - - si:ch73-112j3.1 [Source:NCBI gene;Acc:101883515]
10. vav3b ENSDARG00000073713, ENSDARG00000075962 26 1.613 - - - - - - 0.761 0.852 - vav 3 guanine nucleotide exchange factor b [Source:ZFIN;Acc:ZDB-GENE-070912-251]
11. ccdc113 ENSDARG00000006981 67 1.603 0.883 - - - - - 0.720 - - coiled-coil domain containing 113 [Source:ZFIN;Acc:ZDB-GENE-041010-163]
12. UBL7 UBL7 197 1.596 0.884 - - - - 0.712 - - -
13. PRIMPOL ENSDARG00000033273, ENSDARG00000111555 918 1.592 0.851 0.741 - - - - - - - primase and polymerase (DNA-directed) [Source:ZFIN;Acc:ZDB-GENE-051113-100]
14. spsb3a ENSDARG00000077737 527 1.592 0.747 - - - - - - 0.845 - splA/ryanodine receptor domain and SOCS box containing 3a [Source:ZFIN;Acc:ZDB-GENE-030131-4182]
15. tbcela ENSDARG00000002682 1179 1.557 - 0.853 - - - 0.704 - - - tubulin folding cofactor E-like a [Source:ZFIN;Acc:ZDB-GENE-040426-1719]
16. b3galt2 ENSDARG00000102061, ENSDARG00000114032 216 1.548 - 0.837 - - - 0.711 - - - UDP-Gal:betaGlcNAc beta 1,3-galactosyltransferase, polypeptide 2 [Source:ZFIN;Acc:ZDB-GENE-040426-2078]
17. TSC22D1 ENSDARG00000038306 517 1.545 - 0.749 - - - - - 0.796 - TSC22 domain family, member 1 [Source:ZFIN;Acc:ZDB-GENE-030131-7785]
18. wdr20b_1 ENSDARG00000041239 212 1.543 - 0.720 - - - - 0.823 - - WD repeat domain 20b [Source:ZFIN;Acc:ZDB-GENE-041014-234]
19. map3k19 ENSDARG00000094272 59 1.539 - - 0.737 - - - 0.802 - - mitogen-activated protein kinase kinase kinase 19 [Source:ZFIN;Acc:ZDB-GENE-081104-140]
20. si:ch211-271g18.4 ENSDARG00000115564 197 1.539 - - - - - - 0.730 0.809 - si:ch211-271g18.4 [Source:ZFIN;Acc:ZDB-GENE-110914-58]
21. plat ENSDARG00000062707 491 1.504 0.765 - - - - 0.739 - - - plasminogen activator, tissue [Source:ZFIN;Acc:ZDB-GENE-081104-181]
22. zgc:92249 14 1.489 - - 0.759 - - - 0.730 - - zgc:92249
23. si:ch211-259i2.2 si:ch211-259i2.2 45 1.486 - - 0.737 - - - - 0.749 -
24. GEMIN6 ENSDARG00000105394 130 1.484 - 0.715 - - - - - 0.769 - gem (nuclear organelle) associated protein 6 [Source:ZFIN;Acc:ZDB-GENE-090218-1]
25. tgfb1b ENSDARG00000034895 608 1.471 - 0.761 - - - - 0.710 - - transforming growth factor, beta 1b [Source:ZFIN;Acc:ZDB-GENE-091028-1]
26. BX664721.5 BX664721.5 462 1.465 0.750 - - - - 0.715 - - -
27. atp13a2 ENSDARG00000061890, ENSDARG00000117108 294 1.458 - - - - - 0.756 - 0.702 - ATPase cation transporting 13A2 [Source:ZFIN;Acc:ZDB-GENE-061215-126]
28. ndrg3a ENSDARG00000013087 5581 1.454 - - - - - 0.748 0.706 - - ndrg family member 3a [Source:ZFIN;Acc:ZDB-GENE-980526-124]
29. C8H9orf116 C8H9orf116 379 1.453 - 0.738 - - - - 0.715 - -
30. CRTC2 ENSDARG00000074910 297 1.428 - 0.726 - - - 0.702 - - - CREB regulated transcription coactivator 2 [Source:ZFIN;Acc:ZDB-GENE-030131-2214]
31. aqp8b ENSDARG00000089749 108 0.95 - - - - - - 0.950 - - aquaporin 8b [Source:ZFIN;Acc:ZDB-GENE-080220-47]
32. kdr ENSDARG00000017321 31 0.947 - 0.947 - - - - - - - kinase insert domain receptor (a type III receptor tyrosine kinase) [Source:ZFIN;Acc:ZDB-GENE-041001-112]
33. flt4 ENSDARG00000104453 557 0.943 0.943 - - - - - - - - fms-related tyrosine kinase 4 [Source:ZFIN;Acc:ZDB-GENE-980526-326]
34. zdhhc4 ENSDARG00000045159, ENSDARG00000117124 625 0.934 0.934 - - - - - - - - zinc finger, DHHC-type containing 4 [Source:ZFIN;Acc:ZDB-GENE-030131-9031]
35. nmt1b ENSDARG00000057206 654 0.933 0.933 - - - - - - - - N-myristoyltransferase 1b [Source:ZFIN;Acc:ZDB-GENE-081222-3]
36. si:dkeyp-75b4.9 ENSDARG00000015678 36 0.933 0.933 - - - - - - - - si:dkeyp-75b4.9 [Source:ZFIN;Acc:ZDB-GENE-090313-396]
37. RGS13 ENSDARG00000100835 29 0.927 - - - - - - 0.927 - - regulator of G protein signaling 13 [Source:HGNC Symbol;Acc:HGNC:9995]
38. fhl2b ENSDARG00000003991 32 0.925 - - - - - - 0.925 - - four and a half LIM domains 2b [Source:ZFIN;Acc:ZDB-GENE-041010-121]
39. si:ch211-243a20.3 ENSDARG00000092240 151 0.924 - - - - - - 0.924 - - si:ch211-243a20.3 [Source:ZFIN;Acc:ZDB-GENE-061207-28]
40. TAF1C TAF1C 41 0.915 0.915 - - - - - - - -
41. rft1 ENSDARG00000060398 146 0.915 0.915 - - - - - - - - RFT1 homolog [Source:ZFIN;Acc:ZDB-GENE-110411-126]
42. adra2a ENSDARG00000040841, ENSDARG00000111717, ENSDARG00000114002 44 0.914 0.914 - - - - - - - - adrenoceptor alpha 2A [Source:ZFIN;Acc:ZDB-GENE-021010-1]
43. cxcl-c5c cxcl-c5c 182 0.912 - - - - - - 0.912 - -
44. PAQR8 ENSDARG00000088828 26 0.911 - - - - - - 0.911 - - progestin and adipoQ receptor family member VIII [Source:ZFIN;Acc:ZDB-GENE-030728-3]
45. ECM1 ECM1 87 0.908 - - - - - - 0.908 - -
46. LPHN3 LPHN3 195 0.9 0.900 - - - - - - - -
47. limk1b ENSDARG00000003022 172 0.9 0.900 - - - - - - - - LIM domain kinase 1b [Source:ZFIN;Acc:ZDB-GENE-110411-106]
48. npsn ENSDARG00000010423 768 0.899 - - - - - - 0.899 - - nephrosin [Source:ZFIN;Acc:ZDB-GENE-040420-2]
49. CABZ01111953.1 ENSDARG00000099747 38 0.896 0.896 - - - - - - - - oxysterol-binding protein-related protein 10-like [Source:NCBI gene;Acc:100334085]
50. si:ch211-69l10.2 169 0.895 - - - - - - 0.895 - - si:ch211-69l10.2
51. mxa ENSDARG00000021688 14 0.895 0.895 - - - - - - - - myxovirus (influenza) resistance A [Source:ZFIN;Acc:ZDB-GENE-030721-5]
52. si:ch211-120g10.1 ENSDARG00000090930 275 0.893 - - - - - - 0.893 - - si:ch211-120g10.1 [Source:ZFIN;Acc:ZDB-GENE-130531-56]
53. si:dkey-10g2.5 si:dkey-10g2.5 72 0.89 0.890 - - - - - - - -
54. PLA2G4C_3 PLA2G4C_3 14 0.889 0.889 - - - - - - - -
55. col5a2b ENSDARG00000024847 17 0.889 0.889 - - - - - - - - collagen, type V, alpha 2b [Source:ZFIN;Acc:ZDB-GENE-110406-2]
56. mxtx1 ENSDARG00000069382 32 0.889 0.889 - - - - - - - - mix-type homeobox gene 1 [Source:ZFIN;Acc:ZDB-GENE-000710-7]
57. si:dkey-149i8.3 si:dkey-149i8.3 9 0.889 0.889 - - - - - - - -
58. si:dkey-146n1.4 si:dkey-146n1.4 12 0.889 0.889 - - - - - - - -
59. CABZ01081656.1 CABZ01081656.1 14 0.889 0.889 - - - - - - - -
60. ccr12.3 ccr12.3 79 0.889 0.889 - - - - - - - -
61. si:ch211-12e1.5 si:ch211-12e1.5 14 0.889 0.889 - - - - - - - -
62. CABZ01086801.1 CABZ01086801.1 41 0.889 0.889 - - - - - - - -
63. ahsg ahsg 39 0.889 0.889 - - - - - - - -
64. zgc:152951 ENSDARG00000068663, ENSDARG00000113135 22 0.889 0.889 - - - - - - - - zgc:152951 [Source:ZFIN;Acc:ZDB-GENE-060929-416]
65. si:dkey-93m18.6 ENSDARG00000093173 57 0.889 0.889 - - - - - - - - si:dkey-93m18.6 [Source:ZFIN;Acc:ZDB-GENE-091204-133]
66. si:dkey-6a5.10 si:dkey-6a5.10 17 0.889 0.889 - - - - - - - -
67. CR382327.4 CR382327.4 143 0.889 0.889 - - - - - - - -
68. btr21 ENSDARG00000058329, ENSDARG00000100450 120 0.889 0.889 - - - - - - - - bloodthirsty-related gene family, member 21 [Source:ZFIN;Acc:ZDB-GENE-081031-80]
69. GPR139 14 0.889 0.889 - - - - - - - - G protein-coupled receptor 139, transcript variant X1
70. cacng5a ENSDARG00000003326 17 0.889 0.889 - - - - - - - - calcium channel, voltage-dependent, gamma subunit 5a [Source:ZFIN;Acc:ZDB-GENE-120104-4]
71. si:dkey-15h8.11 si:dkey-15h8.11 1260 0.889 0.889 - - - - - - - -
72. CABZ01038521.1 ENSDARG00000087306 10 0.889 0.889 - - - - - - - -
73. scpp5 ENSDARG00000078622 15 0.889 0.889 - - - - - - - - secretory calcium-binding phosphoprotein 5 [Source:ZFIN;Acc:ZDB-GENE-090313-256]
74. dapk1 ENSDARG00000060093 351 0.889 0.889 - - - - - - - - death-associated protein kinase 1 [Source:ZFIN;Acc:ZDB-GENE-060526-177]
75. rgs9b ENSDARG00000045156, ENSDARG00000111650 77 0.889 0.889 - - - - - - - - regulator of G protein signaling 9b [Source:ZFIN;Acc:ZDB-GENE-040426-1708]
76. CABZ01074081.1 CABZ01074081.1 109 0.889 0.889 - - - - - - - -
77. ERICH1 18 0.889 0.889 - - - - - - - - glutamate rich 1
78. U3_1 U3_1 61 0.889 0.889 - - - - - - - -
79. si:dkey-183n20.2 si:dkey-183n20.2 210 0.888 - - - - - - 0.888 - -
80. NRBP2 NRBP2 127 0.887 - - - - - 0.887 - - -
81. si:ch211-66k16.28 ENSDARG00000088423 80 0.887 0.887 - - - - - - - - si:ch211-66k16.28 [Source:ZFIN;Acc:ZDB-GENE-120709-59]
82. CR450842.1 CR450842.1 129 0.886 0.886 - - - - - - - -
83. pnck ENSDARG00000043648 114 0.883 0.883 - - - - - - - - pregnancy up-regulated nonubiquitous CaM kinase [Source:ZFIN;Acc:ZDB-GENE-081105-127]
84. opn1sw2 ENSDARG00000017274, ENSDARG00000115330 37 0.883 0.883 - - - - - - - - opsin 1 (cone pigments), short-wave-sensitive 2 [Source:ZFIN;Acc:ZDB-GENE-990604-40]
85. bmp6 ENSDARG00000015686 211 0.883 0.883 - - - - - - - - bone morphogenetic protein 6 [Source:ZFIN;Acc:ZDB-GENE-050306-42]
86. KAZN KAZN 58 0.882 0.882 - - - - - - - -
87. slc30a10 ENSDARG00000103983 46 0.881 0.881 - - - - - - - - solute carrier family 30, member 10 [Source:ZFIN;Acc:ZDB-GENE-060608-2]
88. 5S_rRNA_15 5S_rRNA_15 9 0.881 - - - - - - - 0.881 -
89. creb5b ENSDARG00000070536 9 0.88 0.880 - - - - - - - - cAMP responsive element binding protein 5b [Source:ZFIN;Acc:ZDB-GENE-091020-6]
90. h1m ENSDARG00000102892 319 0.879 - 0.879 - - - - - - - linker histone H1M [Source:ZFIN;Acc:ZDB-GENE-030131-5614]
91. s1pr5b ENSDARG00000052192 52 0.879 - - - - - - - 0.879 - sphingosine-1-phosphate receptor 5b [Source:ZFIN;Acc:ZDB-GENE-061201-27]
92. bicc1b ENSDARG00000070497 406 0.878 0.878 - - - - - - - - BicC family RNA binding protein 1b [Source:ZFIN;Acc:ZDB-GENE-080522-3]
93. CABZ01083834.1 CABZ01083834.1 38 0.877 - - - - - - - 0.877 -
94. pcgf6 ENSDARG00000069681 2382 0.877 - - - - - - 0.877 - - polycomb group ring finger 6 [Source:ZFIN;Acc:ZDB-GENE-060526-178]
95. dgat1b ENSDARG00000054914 119 0.876 0.876 - - - - - - - - diacylglycerol O-acyltransferase 1b [Source:ZFIN;Acc:ZDB-GENE-040718-158]
96. foxq1b ENSDARG00000055395 549 0.876 0.876 - - - - - - - - forkhead box Q1b [Source:ZFIN;Acc:ZDB-GENE-040426-2090]
97. ftr51 ENSDARG00000029105 103 0.875 0.875 - - - - - - - - finTRIM family, member 51 [Source:ZFIN;Acc:ZDB-GENE-081104-54]
98. pip5k1ca ENSDARG00000076001 53 0.875 0.875 - - - - - - - - phosphatidylinositol-4-phosphate 5-kinase, type I, gamma a [Source:ZFIN;Acc:ZDB-GENE-050208-358]
99. si:dkey-11f4.14 ENSDARG00000098461 35 0.875 0.875 - - - - - - - - si:dkey-11f4.14 [Source:ZFIN;Acc:ZDB-GENE-070912-355]
100. srgn ENSDARG00000077069 612 0.874 - - - - - 0.874 - - - serglycin [Source:ZFIN;Acc:ZDB-GENE-030131-7127]

There are 1056 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA