Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Results for Shmt1

Gene Name Gene ID Reads Annotation
Shmt1 ENSMUSG00000020534 2147 serine hydroxymethyltransferase 1 (soluble) [Source:MGI Symbol;Acc:MGI:98299]







Genes with expression patterns similar to Shmt1

Nr. Gene Name Gene ID Reads Σ scores E10 5 slice 1 E10 5 slice 2 E10 5 slice 3 E11 5 slice 1 E11 5 slice 2 E11 5 slice 3 Annotation
1. Shmt1 ENSMUSG00000020534 2147 6 1.000 1.000 1.000 1.000 1.000 1.000 serine hydroxymethyltransferase 1 (soluble) [Source:MGI Symbol;Acc:MGI:98299]
2. Coprs ENSMUSG00000031458 1554 1.79 0.847 - - - - 0.943 coordinator of PRMT5, differentiation stimulator [Source:MGI Symbol;Acc:MGI:1913673]
3. Nfkbib ENSMUSG00000030595 1018 1.788 0.836 - - - - 0.952 nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, beta [Source:MGI Symbol;Acc:MGI:104752]
4. Atg2a ENSMUSG00000024773, ENSMUSG00000106907 577 1.734 0.766 - - - - 0.968 autophagy related 2A [Source:MGI Symbol;Acc:MGI:1916291]
5. Scamp1 ENSMUSG00000021687 1701 1.733 0.784 - - - - 0.949 secretory carrier membrane protein 1 [Source:MGI Symbol;Acc:MGI:1349480]
6. Pnpla2 ENSMUSG00000025509 905 1.727 0.836 - - - - 0.891 patatin-like phospholipase domain containing 2 [Source:MGI Symbol;Acc:MGI:1914103]
7. Tstd3 ENSMUSG00000028251 1160 1.683 - 0.727 - - - 0.956 thiosulfate sulfurtransferase (rhodanese)-like domain containing 3 [Source:MGI Symbol;Acc:MGI:1924282]
8. Brd8 ENSMUSG00000003778 4078 1.676 - 0.763 - - - 0.913 bromodomain containing 8 [Source:MGI Symbol;Acc:MGI:1925906]
9. 2010204K13Rik ENSMUSG00000063018 1305 1.454 0.734 0.720 - - - - RIKEN cDNA 2010204K13 gene [Source:MGI Symbol;Acc:MGI:1922859]
10. Rnf31 ENSMUSG00000047098 530 0.971 - - - - - 0.971 ring finger protein 31 [Source:MGI Symbol;Acc:MGI:1934704]
11. Stk11 ENSMUSG00000003068 745 0.968 - - - - - 0.968 serine/threonine kinase 11 [Source:MGI Symbol;Acc:MGI:1341870]
12. Gm10576 ENSMUSG00000102578 235 0.968 - - - - - 0.968 predicted gene 10576 [Source:MGI Symbol;Acc:MGI:3642535]
13. Zkscan1 ENSMUSG00000029729 2845 0.968 - - - - - 0.968 zinc finger with KRAB and SCAN domains 1 [Source:MGI Symbol;Acc:MGI:1921820]
14. Arid3b ENSMUSG00000004661 2972 0.967 - - - - - 0.967 AT rich interactive domain 3B (BRIGHT-like) [Source:MGI Symbol;Acc:MGI:1930768]
15. Adm ENSMUSG00000030790 312 0.967 - - - - - 0.967 adrenomedullin [Source:MGI Symbol;Acc:MGI:108058]
16. Dkk3 ENSMUSG00000030772 426 0.966 - - - - - 0.966 dickkopf WNT signaling pathway inhibitor 3 [Source:MGI Symbol;Acc:MGI:1354952]
17. Xk ENSMUSG00000015342 218 0.966 - - - - - 0.966 X-linked Kx blood group [Source:MGI Symbol;Acc:MGI:103569]
18. Atp6v0c ENSMUSG00000024121 107 0.965 - - - - - 0.965 ATPase, H+ transporting, lysosomal V0 subunit C [Source:MGI Symbol;Acc:MGI:88116]
19. 4632415L05Rik ENSMUSG00000048106 222 0.965 - - - - - 0.965 RIKEN cDNA 4632415L05 gene [Source:MGI Symbol;Acc:MGI:1918058]
20. Ccdc68 ENSMUSG00000038903 129 0.965 - - - - - 0.965 coiled-coil domain containing 68 [Source:MGI Symbol;Acc:MGI:3612676]
21. Dnajc21 ENSMUSG00000044224 1073 0.964 - - - - - 0.964 DnaJ heat shock protein family (Hsp40) member C21 [Source:MGI Symbol;Acc:MGI:1925371]
22. Ccdc104 Ccdc104 1111 0.964 - - - - - 0.964
23. Coq10a ENSMUSG00000039914 324 0.963 - - - - - 0.963 coenzyme Q10A [Source:MGI Symbol;Acc:MGI:2684847]
24. Shroom4 ENSMUSG00000068270 785 0.963 - - - - - 0.963 shroom family member 4 [Source:MGI Symbol;Acc:MGI:2685570]
25. Ptpmt1 ENSMUSG00000063235, ENSMUSG00000110860 1572 0.963 - - - - - 0.963 protein tyrosine phosphatase, mitochondrial 1 [Source:NCBI gene;Acc:66461]
26. Gm15966 ENSMUSG00000085865 150 0.963 - - - - - 0.963 predicted gene 15966 [Source:MGI Symbol;Acc:MGI:3802004]
27. Dym ENSMUSG00000035765 507 0.962 - - - - - 0.962 dymeclin [Source:MGI Symbol;Acc:MGI:1918480]
28. Caskin2 ENSMUSG00000034471 316 0.962 - - - - - 0.962 CASK-interacting protein 2 [Source:MGI Symbol;Acc:MGI:2157062]
29. Prrg2 ENSMUSG00000007837 453 0.962 - - - - - 0.962 proline-rich Gla (G-carboxyglutamic acid) polypeptide 2 [Source:MGI Symbol;Acc:MGI:1929596]
30. Tmub1 ENSMUSG00000028958 444 0.961 - - - - - 0.961 transmembrane and ubiquitin-like domain containing 1 [Source:MGI Symbol;Acc:MGI:1923764]
31. Acyp1 ENSMUSG00000008822 1101 0.96 - - - - - 0.960 acylphosphatase 1, erythrocyte (common) type [Source:MGI Symbol;Acc:MGI:1913454]
32. Zfp131 ENSMUSG00000094870 3397 0.96 - - - - - 0.960 zinc finger protein 131 [Source:MGI Symbol;Acc:MGI:1919715]
33. Mtmr10 ENSMUSG00000030522 476 0.96 - - - - - 0.960 myotubularin related protein 10 [Source:MGI Symbol;Acc:MGI:2142292]
34. Gnptg ENSMUSG00000035521 519 0.96 - - - - - 0.960 N-acetylglucosamine-1-phosphotransferase, gamma subunit [Source:MGI Symbol;Acc:MGI:2147006]
35. Fbxl6 ENSMUSG00000022559 1084 0.959 - - - - - 0.959 F-box and leucine-rich repeat protein 6 [Source:MGI Symbol;Acc:MGI:1354705]
36. Myo9b ENSMUSG00000004677 902 0.959 - - - - - 0.959 myosin IXb [Source:MGI Symbol;Acc:MGI:106624]
37. Col4a6 ENSMUSG00000031273, ENSMUSG00000116510 323 0.959 - - - - - 0.959 collagen, type IV, alpha 6 [Source:MGI Symbol;Acc:MGI:2152695]
38. Pon2 ENSMUSG00000032667 1139 0.959 - - - - - 0.959 paraoxonase 2 [Source:MGI Symbol;Acc:MGI:106687]
39. Usp42 ENSMUSG00000051306 1252 0.959 - - - - - 0.959 ubiquitin specific peptidase 42 [Source:MGI Symbol;Acc:MGI:1924050]
40. Gm16344 ENSMUSG00000084824 377 0.959 - - - - - 0.959 predicted gene 16344 [Source:MGI Symbol;Acc:MGI:3840129]
41. Rbm12b1 ENSMUSG00000046667 331 0.958 - - - - - 0.958 RNA binding motif protein 12 B1 [Source:MGI Symbol;Acc:MGI:1919647]
42. Ubap1 ENSMUSG00000028437 2702 0.958 - - - - - 0.958 ubiquitin-associated protein 1 [Source:MGI Symbol;Acc:MGI:2149543]
43. 2810408I11Rik ENSMUSG00000087213 916 0.958 - - - - - 0.958 RIKEN cDNA 2810408I11 gene [Source:MGI Symbol;Acc:MGI:1917191]
44. Trim23 ENSMUSG00000021712 798 0.958 - - - - - 0.958 tripartite motif-containing 23 [Source:MGI Symbol;Acc:MGI:1933161]
45. Nt5m ENSMUSG00000032615 855 0.958 - - - - - 0.958 5',3'-nucleotidase, mitochondrial [Source:MGI Symbol;Acc:MGI:1917127]
46. Fryl ENSMUSG00000070733 1717 0.957 - - - - - 0.957 FRY like transcription coactivator [Source:MGI Symbol;Acc:MGI:1919563]
47. Fam160a2 ENSMUSG00000044465 874 0.957 - - - - - 0.957 family with sequence similarity 160, member A2 [Source:MGI Symbol;Acc:MGI:1921599]
48. Ppm1d ENSMUSG00000020525 1303 0.956 - - - - - 0.956 protein phosphatase 1D magnesium-dependent, delta isoform [Source:MGI Symbol;Acc:MGI:1858214]
49. Plk3 ENSMUSG00000028680 442 0.956 - - - - - 0.956 polo like kinase 3 [Source:MGI Symbol;Acc:MGI:109604]
50. Heatr6 ENSMUSG00000000976 1640 0.955 - - - - - 0.955 HEAT repeat containing 6 [Source:MGI Symbol;Acc:MGI:1919790]
51. Vkorc1l1 ENSMUSG00000066735 1190 0.955 - - - - - 0.955 vitamin K epoxide reductase complex, subunit 1-like 1 [Source:MGI Symbol;Acc:MGI:1916818]
52. Rragd ENSMUSG00000028278 762 0.954 - - - - - 0.954 Ras-related GTP binding D [Source:MGI Symbol;Acc:MGI:1098604]
53. Fcgrt ENSMUSG00000003420 484 0.953 - - - - - 0.953 Fc receptor, IgG, alpha chain transporter [Source:MGI Symbol;Acc:MGI:103017]
54. Zfp687 ENSMUSG00000019338 583 0.953 - - - - - 0.953 zinc finger protein 687 [Source:MGI Symbol;Acc:MGI:1925516]
55. Ptx3 ENSMUSG00000027832 735 0.953 - - - - - 0.953 pentraxin related gene [Source:MGI Symbol;Acc:MGI:104641]
56. Ablim1 ENSMUSG00000025085 1169 0.952 - - - - - 0.952 actin-binding LIM protein 1 [Source:MGI Symbol;Acc:MGI:1194500]
57. Bcl7b ENSMUSG00000029681 996 0.952 - - - - - 0.952 B cell CLL/lymphoma 7B [Source:MGI Symbol;Acc:MGI:1332238]
58. Smad1 ENSMUSG00000031681 1752 0.952 - - - - - 0.952 SMAD family member 1 [Source:MGI Symbol;Acc:MGI:109452]
59. Mdm1 ENSMUSG00000020212 835 0.952 - - - - - 0.952 transformed mouse 3T3 cell double minute 1 [Source:MGI Symbol;Acc:MGI:96951]
60. Atxn2l ENSMUSG00000032637 1322 0.952 - - - - - 0.952 ataxin 2-like [Source:MGI Symbol;Acc:MGI:2446242]
61. Map2k6 ENSMUSG00000020623 623 0.952 - - - - - 0.952 mitogen-activated protein kinase kinase 6 [Source:MGI Symbol;Acc:MGI:1346870]
62. Man2a2 ENSMUSG00000038886 1255 0.951 - - - - - 0.951 mannosidase 2, alpha 2 [Source:MGI Symbol;Acc:MGI:2150656]
63. Chchd3 ENSMUSG00000053768 3050 0.951 - - - - - 0.951 coiled-coil-helix-coiled-coil-helix domain containing 3 [Source:MGI Symbol;Acc:MGI:1913325]
64. Hectd3 ENSMUSG00000046861 921 0.951 - - - - - 0.951 HECT domain E3 ubiquitin protein ligase 3 [Source:MGI Symbol;Acc:MGI:1923858]
65. Trib1 ENSMUSG00000032501 1194 0.951 - - - - - 0.951 tribbles pseudokinase 1 [Source:MGI Symbol;Acc:MGI:2443397]
66. Snapin ENSMUSG00000001018 1886 0.951 - - - - - 0.951 SNAP-associated protein [Source:MGI Symbol;Acc:MGI:1333745]
67. Megf10 ENSMUSG00000024593 890 0.951 - - - - - 0.951 multiple EGF-like-domains 10 [Source:MGI Symbol;Acc:MGI:2685177]
68. Jak2 ENSMUSG00000024789 1097 0.949 - - - - - 0.949 Janus kinase 2 [Source:MGI Symbol;Acc:MGI:96629]
69. Ddx27 ENSMUSG00000017999 1798 0.949 - - - - - 0.949 DEAD (Asp-Glu-Ala-Asp) box polypeptide 27 [Source:MGI Symbol;Acc:MGI:2385884]
70. Npepl1 ENSMUSG00000039263 1212 0.949 - - - - - 0.949 aminopeptidase-like 1 [Source:MGI Symbol;Acc:MGI:2448523]
71. Kcnh2 ENSMUSG00000038319 806 0.949 - - - - - 0.949 potassium voltage-gated channel, subfamily H (eag-related), member 2 [Source:MGI Symbol;Acc:MGI:1341722]
72. Supt4a ENSMUSG00000020485 3703 0.948 - - - - - 0.948 suppressor of Ty 4A [Source:MGI Symbol;Acc:MGI:107416]
73. Cdc25c ENSMUSG00000044201 1273 0.948 - - - - - 0.948 cell division cycle 25C [Source:MGI Symbol;Acc:MGI:88350]
74. Mfng ENSMUSG00000018169 425 0.948 - - - - - 0.948 MFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase [Source:MGI Symbol;Acc:MGI:1095404]
75. Evc ENSMUSG00000029122 1169 0.946 - - - - - 0.946 EvC ciliary complex subunit 1 [Source:MGI Symbol;Acc:MGI:1890596]
76. Pelo ENSMUSG00000042275 1496 0.946 - - - - - 0.946 pelota mRNA surveillance and ribosome rescue factor [Source:MGI Symbol;Acc:MGI:2145154]
77. Syvn1 ENSMUSG00000024807 910 0.946 - - - - - 0.946 synovial apoptosis inhibitor 1, synoviolin [Source:MGI Symbol;Acc:MGI:1921376]
78. Zc3h7a ENSMUSG00000037965 1775 0.946 - - - - - 0.946 zinc finger CCCH type containing 7 A [Source:MGI Symbol;Acc:MGI:2445044]
79. Ahi1 ENSMUSG00000019986 4663 0.945 - - - - - 0.945 Abelson helper integration site 1 [Source:MGI Symbol;Acc:MGI:87971]
80. Zc3hc1 ENSMUSG00000039130 2638 0.945 - - - - - 0.945 zinc finger, C3HC type 1 [Source:MGI Symbol;Acc:MGI:1916023]
81. Gpn1 ENSMUSG00000064037 2632 0.945 - - - - - 0.945 GPN-loop GTPase 1 [Source:MGI Symbol;Acc:MGI:1921504]
82. Slco5a1 ENSMUSG00000025938 586 0.944 - - - - - 0.944 solute carrier organic anion transporter family, member 5A1 [Source:MGI Symbol;Acc:MGI:2443431]
83. 2700029M09Rik 2700029M09Rik 1474 0.943 - - - - - 0.943
84. Smco4 ENSMUSG00000058173 1242 0.943 - - - - - 0.943 single-pass membrane protein with coiled-coil domains 4 [Source:MGI Symbol;Acc:MGI:3039636]
85. Arf2 ENSMUSG00000062421 4459 0.943 - - - - - 0.943 ADP-ribosylation factor 2 [Source:MGI Symbol;Acc:MGI:99595]
86. Kcnmb4 ENSMUSG00000054934 1522 0.943 - - - - - 0.943 potassium large conductance calcium-activated channel, subfamily M, beta member 4 [Source:MGI Symbol;Acc:MGI:1913272]
87. Irx2 ENSMUSG00000001504 819 0.943 - - - - - 0.943 Iroquois homeobox 2 [Source:MGI Symbol;Acc:MGI:1197526]
88. Chek1 ENSMUSG00000032113 2429 0.943 - - - - - 0.943 checkpoint kinase 1 [Source:MGI Symbol;Acc:MGI:1202065]
89. Srprb ENSMUSG00000032553 2032 0.942 - - - - - 0.942 signal recognition particle receptor, B subunit [Source:MGI Symbol;Acc:MGI:102964]
90. Nufip1 ENSMUSG00000022009 2226 0.942 - - - - - 0.942 nuclear fragile X mental retardation protein interacting protein 1 [Source:MGI Symbol;Acc:MGI:1351474]
91. Inpp5b ENSMUSG00000028894 575 0.942 - - - - - 0.942 inositol polyphosphate-5-phosphatase B [Source:MGI Symbol;Acc:MGI:103257]
92. Map6 ENSMUSG00000055407 476 0.941 - - - - - 0.941 microtubule-associated protein 6 [Source:MGI Symbol;Acc:MGI:1201690]
93. Pnrc2 ENSMUSG00000028675 6182 0.941 - - - - - 0.941 proline-rich nuclear receptor coactivator 2 [Source:MGI Symbol;Acc:MGI:106512]
94. Atp6v1e1 ENSMUSG00000019210 2186 0.941 - - - - - 0.941 ATPase, H+ transporting, lysosomal V1 subunit E1 [Source:MGI Symbol;Acc:MGI:894326]
95. Bcl2l11 ENSMUSG00000027381 1941 0.94 - - - - - 0.940 BCL2-like 11 (apoptosis facilitator) [Source:MGI Symbol;Acc:MGI:1197519]
96. Enah ENSMUSG00000022995 1908 0.939 - - - - - 0.939 ENAH actin regulator [Source:MGI Symbol;Acc:MGI:108360]
97. Hmgcl ENSMUSG00000028672 2643 0.939 - - - - - 0.939 3-hydroxy-3-methylglutaryl-Coenzyme A lyase [Source:MGI Symbol;Acc:MGI:96158]
98. Zw10 ENSMUSG00000032264 1164 0.939 - - - - - 0.939 zw10 kinetochore protein [Source:MGI Symbol;Acc:MGI:1349478]
99. Cflar ENSMUSG00000026031 1594 0.939 - - - - - 0.939 CASP8 and FADD-like apoptosis regulator [Source:MGI Symbol;Acc:MGI:1336166]
100. Fgd4 ENSMUSG00000022788 6160 0.938 - - - - - 0.938 FYVE, RhoGEF and PH domain containing 4 [Source:MGI Symbol;Acc:MGI:2183747]

There are 587 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA