Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Results for Sdc1

Gene Name Gene ID Reads Annotation
Sdc1 ENSMUSG00000020592 1879 syndecan 1 [Source:MGI Symbol;Acc:MGI:1349162]







Genes with expression patterns similar to Sdc1

Nr. Gene Name Gene ID Reads Σ scores E10 5 slice 1 E10 5 slice 2 E10 5 slice 3 E11 5 slice 1 E11 5 slice 2 E11 5 slice 3 Annotation
1. Sdc1 ENSMUSG00000020592 1879 6 1.000 1.000 1.000 1.000 1.000 1.000 syndecan 1 [Source:MGI Symbol;Acc:MGI:1349162]
2. Actr3 ENSMUSG00000026341 4146 0.917 - 0.917 - - - - ARP3 actin-related protein 3 [Source:MGI Symbol;Acc:MGI:1921367]
3. Trmt2a ENSMUSG00000022721, ENSMUSG00000098930 1641 0.915 - 0.915 - - - - TRM2 tRNA methyltransferase 2A [Source:MGI Symbol;Acc:MGI:96270]
4. Kdm1b ENSMUSG00000038080 577 0.913 - 0.913 - - - - lysine (K)-specific demethylase 1B [Source:MGI Symbol;Acc:MGI:2145261]
5. Med13l ENSMUSG00000018076 1863 0.91 - 0.910 - - - - mediator complex subunit 13-like [Source:MGI Symbol;Acc:MGI:2670178]
6. Pdcd11 ENSMUSG00000025047 1164 0.91 - 0.910 - - - - programmed cell death 11 [Source:MGI Symbol;Acc:MGI:1341788]
7. Tmem243 ENSMUSG00000079659 181 0.906 - 0.906 - - - - transmembrane protein 243, mitochondrial [Source:MGI Symbol;Acc:MGI:3606159]
8. Zswim1 ENSMUSG00000017764 460 0.906 - 0.906 - - - - zinc finger SWIM-type containing 1 [Source:MGI Symbol;Acc:MGI:1919221]
9. Pigs ENSMUSG00000041958 765 0.905 - 0.905 - - - - phosphatidylinositol glycan anchor biosynthesis, class S [Source:MGI Symbol;Acc:MGI:2687325]
10. Ccar2 ENSMUSG00000033712 2357 0.905 - 0.905 - - - - cell cycle activator and apoptosis regulator 2 [Source:MGI Symbol;Acc:MGI:2444228]
11. Ube2g2 ENSMUSG00000009293 1035 0.905 - 0.905 - - - - ubiquitin-conjugating enzyme E2G 2 [Source:MGI Symbol;Acc:MGI:1343188]
12. Dpm3 ENSMUSG00000042737 1272 0.905 - 0.905 - - - - dolichyl-phosphate mannosyltransferase polypeptide 3 [Source:MGI Symbol;Acc:MGI:1915813]
13. Zfyve20 Zfyve20 1677 0.903 - 0.903 - - - -
14. Chka ENSMUSG00000024843 2599 0.902 - 0.902 - - - - choline kinase alpha [Source:MGI Symbol;Acc:MGI:107760]
15. Mef2c ENSMUSG00000005583 2710 0.902 - 0.902 - - - - myocyte enhancer factor 2C [Source:MGI Symbol;Acc:MGI:99458]
16. 0610010F05Rik ENSMUSG00000042208 755 0.902 - 0.902 - - - - RIKEN cDNA 0610010F05 gene [Source:MGI Symbol;Acc:MGI:1918925]
17. 4632434I11Rik 4632434I11Rik 951 0.901 - 0.901 - - - -
18. Phospho2 ENSMUSG00000027088 921 0.9 - 0.900 - - - - phosphatase, orphan 2 [Source:MGI Symbol;Acc:MGI:1920623]
19. Vps9d1 ENSMUSG00000001062 694 0.9 - 0.900 - - - - VPS9 domain containing 1 [Source:MGI Symbol;Acc:MGI:1914143]
20. Mcam ENSMUSG00000032135 610 0.899 - 0.899 - - - - melanoma cell adhesion molecule [Source:MGI Symbol;Acc:MGI:1933966]
21. Pigu ENSMUSG00000038383 705 0.899 - 0.899 - - - - phosphatidylinositol glycan anchor biosynthesis, class U [Source:MGI Symbol;Acc:MGI:3039607]
22. Dido1 ENSMUSG00000038914 1891 0.898 - 0.898 - - - - death inducer-obliterator 1 [Source:MGI Symbol;Acc:MGI:1344352]
23. Mex3d ENSMUSG00000048696 2206 0.898 - 0.898 - - - - mex3 RNA binding family member D [Source:MGI Symbol;Acc:MGI:2681847]
24. Pan2 ENSMUSG00000005682 912 0.897 - 0.897 - - - - PAN2 poly(A) specific ribonuclease subunit [Source:MGI Symbol;Acc:MGI:1918984]
25. Rrp15 ENSMUSG00000001305 966 0.897 - 0.897 - - - - ribosomal RNA processing 15 homolog (S. cerevisiae) [Source:MGI Symbol;Acc:MGI:1914473]
26. Wnk3 ENSMUSG00000041245 552 0.896 - 0.896 - - - - WNK lysine deficient protein kinase 3 [Source:MGI Symbol;Acc:MGI:2652875]
27. Pank1 ENSMUSG00000033610 1083 0.896 - 0.896 - - - - pantothenate kinase 1 [Source:MGI Symbol;Acc:MGI:1922985]
28. E130307A14Rik ENSMUSG00000087177 1348 0.896 - 0.896 - - - - RIKEN cDNA E130307A14 gene [Source:MGI Symbol;Acc:MGI:3036287]
29. Crcp ENSMUSG00000025532 699 0.895 - 0.895 - - - - calcitonin gene-related peptide-receptor component protein [Source:MGI Symbol;Acc:MGI:1100818]
30. Cryzl1 ENSMUSG00000058240 2195 0.895 - 0.895 - - - - crystallin, zeta (quinone reductase)-like 1 [Source:MGI Symbol;Acc:MGI:1913859]
31. Siah1a ENSMUSG00000036840 1939 0.894 - 0.894 - - - - siah E3 ubiquitin protein ligase 1A [Source:MGI Symbol;Acc:MGI:108064]
32. Rspo2 ENSMUSG00000051920 204 0.894 - 0.894 - - - - R-spondin 2 [Source:MGI Symbol;Acc:MGI:1922667]
33. Mtx3 ENSMUSG00000021704 616 0.894 - 0.894 - - - - metaxin 3 [Source:MGI Symbol;Acc:MGI:2686040]
34. Dpy19l4 ENSMUSG00000045205 962 0.893 - 0.893 - - - - dpy-19-like 4 (C. elegans) [Source:MGI Symbol;Acc:MGI:2685869]
35. Gm26822 ENSMUSG00000096921 421 0.893 - 0.893 - - - - predicted gene, 26822 [Source:MGI Symbol;Acc:MGI:5477316]
36. Zfp609 ENSMUSG00000040524 1316 0.893 - 0.893 - - - - zinc finger protein 609 [Source:MGI Symbol;Acc:MGI:2674092]
37. Klf11 ENSMUSG00000020653 838 0.893 - 0.893 - - - - Kruppel-like factor 11 [Source:MGI Symbol;Acc:MGI:2653368]
38. Pgap1 ENSMUSG00000073678 833 0.893 - 0.893 - - - - post-GPI attachment to proteins 1 [Source:MGI Symbol;Acc:MGI:2443342]
39. Phyh ENSMUSG00000026664 659 0.893 - 0.893 - - - - phytanoyl-CoA hydroxylase [Source:MGI Symbol;Acc:MGI:891978]
40. Usf1 ENSMUSG00000026641 336 0.892 - 0.892 - - - - upstream transcription factor 1 [Source:MGI Symbol;Acc:MGI:99542]
41. Prcc ENSMUSG00000004895 527 0.891 - 0.891 - - - - papillary renal cell carcinoma (translocation-associated) [Source:MGI Symbol;Acc:MGI:2137738]
42. Ube2e2 ENSMUSG00000058317 729 0.891 - 0.891 - - - - ubiquitin-conjugating enzyme E2E 2 [Source:MGI Symbol;Acc:MGI:2384997]
43. Foxm1 ENSMUSG00000001517 1628 0.891 - 0.891 - - - - forkhead box M1 [Source:MGI Symbol;Acc:MGI:1347487]
44. Arhgap23 ENSMUSG00000049807 1316 0.891 - 0.891 - - - - Rho GTPase activating protein 23 [Source:MGI Symbol;Acc:MGI:3697726]
45. Exog ENSMUSG00000042787 1392 0.89 - 0.890 - - - - endo/exonuclease (5'-3'), endonuclease G-like [Source:MGI Symbol;Acc:MGI:2143333]
46. Rps19bp1 ENSMUSG00000051518 828 0.89 - 0.890 - - - - ribosomal protein S19 binding protein 1 [Source:MGI Symbol;Acc:MGI:1913788]
47. Pdgfb ENSMUSG00000000489 325 0.889 - 0.889 - - - - platelet derived growth factor, B polypeptide [Source:MGI Symbol;Acc:MGI:97528]
48. Cyr61 ENSMUSG00000028195 563 0.889 - 0.889 - - - - cysteine rich protein 61 [Source:MGI Symbol;Acc:MGI:88613]
49. Gm11944 ENSMUSG00000084941 286 0.889 - 0.889 - - - - predicted gene 11944 [Source:MGI Symbol;Acc:MGI:3702312]
50. Rrnad1 ENSMUSG00000004896 798 0.889 - 0.889 - - - - ribosomal RNA adenine dimethylase domain containing 1 [Source:MGI Symbol;Acc:MGI:2387197]
51. Gprasp2 ENSMUSG00000072966 2238 0.889 - 0.889 - - - - G protein-coupled receptor associated sorting protein 2 [Source:MGI Symbol;Acc:MGI:2442071]
52. Itfg2 ENSMUSG00000001518 1233 0.889 - 0.889 - - - - integrin alpha FG-GAP repeat containing 2 [Source:MGI Symbol;Acc:MGI:1915450]
53. Gm16300 ENSMUSG00000089828 225 0.889 - 0.889 - - - - predicted gene 16300 [Source:MGI Symbol;Acc:MGI:3826587]
54. Irgm1 ENSMUSG00000046879, ENSMUSG00000116444 77 0.888 - 0.888 - - - - immunity-related GTPase family M member 1 [Source:NCBI gene;Acc:15944]
55. Zfp346 ENSMUSG00000021481 1512 0.888 - 0.888 - - - - zinc finger protein 346 [Source:MGI Symbol;Acc:MGI:1349417]
56. Oprm1 ENSMUSG00000000766 292 0.888 - 0.888 - - - - opioid receptor, mu 1 [Source:MGI Symbol;Acc:MGI:97441]
57. Snapc3 ENSMUSG00000028483 2319 0.888 - 0.888 - - - - small nuclear RNA activating complex, polypeptide 3 [Source:MGI Symbol;Acc:MGI:1916338]
58. Ubox5 ENSMUSG00000027300 434 0.888 - 0.888 - - - - U box domain containing 5 [Source:MGI Symbol;Acc:MGI:2154658]
59. Fam120aos ENSMUSG00000097059 81 0.888 - 0.888 - - - - family with sequence similarity 120A, opposite strand [Source:MGI Symbol;Acc:MGI:1915378]
60. Gm16409 ENSMUSG00000075581 176 0.888 - 0.888 - - - - predicted gene 16409 [Source:MGI Symbol;Acc:MGI:3646708]
61. Scara5 ENSMUSG00000022032 68 0.887 - 0.887 - - - - scavenger receptor class A, member 5 [Source:MGI Symbol;Acc:MGI:1918395]
62. Fam132b 102 0.887 - 0.887 - - - - family with sequence similarity 132, member B, transcript variant X3
63. C2cd2l ENSMUSG00000032120 223 0.886 - 0.886 - - - - C2 calcium-dependent domain containing 2-like [Source:MGI Symbol;Acc:MGI:1919014]
64. 4933415A04Rik ENSMUSG00000045877 412 0.886 - 0.886 - - - - RIKEN cDNA 4933415A04 gene [Source:MGI Symbol;Acc:MGI:1922977]
65. Gm10307 ENSMUSG00000101093 159 0.886 - 0.886 - - - - predicted gene 10307 [Source:MGI Symbol;Acc:MGI:3642371]
66. Cdc14a ENSMUSG00000033502 731 0.886 - 0.886 - - - - CDC14 cell division cycle 14A [Source:MGI Symbol;Acc:MGI:2442676]
67. Ppp1r15b ENSMUSG00000046062 1778 0.886 - 0.886 - - - - protein phosphatase 1, regulatory subunit 15B [Source:MGI Symbol;Acc:MGI:2444211]
68. Slc16a9 ENSMUSG00000037762 83 0.886 - 0.886 - - - - solute carrier family 16 (monocarboxylic acid transporters), member 9 [Source:MGI Symbol;Acc:MGI:1914109]
69. Ppfia1 ENSMUSG00000037519 3319 0.885 - 0.885 - - - - protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 1 [Source:MGI Symbol;Acc:MGI:1924750]
70. Gm4335 ENSMUSG00000097989 113 0.885 - 0.885 - - - - predicted gene 4335 [Source:MGI Symbol;Acc:MGI:3782519]
71. Gm8349 ENSMUSG00000098208 124 0.885 - 0.885 - - - - predicted gene 8349 [Source:MGI Symbol;Acc:MGI:3643135]
72. Gm15879 ENSMUSG00000084790 387 0.885 - 0.885 - - - - predicted gene 15879 [Source:MGI Symbol;Acc:MGI:3802012]
73. 0610005C13Rik ENSMUSG00000109644 478 0.885 - 0.885 - - - - RIKEN cDNA 0610005C13 gene [Source:MGI Symbol;Acc:MGI:1918911]
74. Gm13652 ENSMUSG00000087333 91 0.884 - 0.884 - - - - predicted gene 13652 [Source:MGI Symbol;Acc:MGI:3650033]
75. Gnpda2 ENSMUSG00000029209 182 0.884 - 0.884 - - - - glucosamine-6-phosphate deaminase 2 [Source:MGI Symbol;Acc:MGI:1915230]
76. Usp2 ENSMUSG00000032010 525 0.884 - 0.884 - - - - ubiquitin specific peptidase 2 [Source:MGI Symbol;Acc:MGI:1858178]
77. Dzank1 ENSMUSG00000037259 518 0.884 - 0.884 - - - - double zinc ribbon and ankyrin repeat domains 1 [Source:MGI Symbol;Acc:MGI:2139080]
78. Zfp947 ENSMUSG00000063383 396 0.884 - 0.884 - - - - zinc finger protein 947 [Source:MGI Symbol;Acc:MGI:3646759]
79. AW209491 ENSMUSG00000039182 618 0.884 - 0.884 - - - - expressed sequence AW209491 [Source:MGI Symbol;Acc:MGI:2145422]
80. Tapt1 ENSMUSG00000046985 1206 0.884 - 0.884 - - - - transmembrane anterior posterior transformation 1 [Source:MGI Symbol;Acc:MGI:2683537]
81. Rfx5 ENSMUSG00000005774 204 0.883 - 0.883 - - - - regulatory factor X, 5 (influences HLA class II expression) [Source:MGI Symbol;Acc:MGI:1858421]
82. Nop16 ENSMUSG00000025869 1347 0.882 - 0.882 - - - - NOP16 nucleolar protein [Source:MGI Symbol;Acc:MGI:107862]
83. Tmod3 ENSMUSG00000058587 3578 0.882 - 0.882 - - - - tropomodulin 3 [Source:MGI Symbol;Acc:MGI:1355315]
84. Phkb ENSMUSG00000036879 701 0.882 - 0.882 - - - - phosphorylase kinase beta [Source:MGI Symbol;Acc:MGI:97578]
85. Zfp30 ENSMUSG00000047473 562 0.882 - 0.882 - - - - zinc finger protein 30 [Source:MGI Symbol;Acc:MGI:99178]
86. Gm10689 ENSMUSG00000074412 328 0.881 - 0.881 - - - - predicted gene 10689 [Source:MGI Symbol;Acc:MGI:3642613]
87. Nsun4 ENSMUSG00000028706 804 0.881 - 0.881 - - - - NOL1/NOP2/Sun domain family, member 4 [Source:MGI Symbol;Acc:MGI:1919431]
88. Chfr ENSMUSG00000014668 1287 0.881 - 0.881 - - - - checkpoint with forkhead and ring finger domains [Source:MGI Symbol;Acc:MGI:2444898]
89. Anapc4 ENSMUSG00000029176 2907 0.88 - 0.880 - - - - anaphase promoting complex subunit 4 [Source:MGI Symbol;Acc:MGI:1098673]
90. Fbn1 ENSMUSG00000027204 960 0.879 - 0.879 - - - - fibrillin 1 [Source:MGI Symbol;Acc:MGI:95489]
91. Tceal3 ENSMUSG00000044550 742 0.879 - 0.879 - - - - transcription elongation factor A (SII)-like 3 [Source:MGI Symbol;Acc:MGI:1913354]
92. Rpl36 ENSMUSG00000057863 918 0.879 - 0.879 - - - - ribosomal protein L36 [Source:MGI Symbol;Acc:MGI:1860603]
93. Gm16702 ENSMUSG00000097796 133 0.878 - 0.878 - - - - predicted gene, 16702 [Source:MGI Symbol;Acc:MGI:4439626]
94. Tgfbrap1 ENSMUSG00000070939 1413 0.878 - 0.878 - - - - transforming growth factor, beta receptor associated protein 1 [Source:MGI Symbol;Acc:MGI:2447427]
95. Sft2d2 ENSMUSG00000040848 1850 0.877 - 0.877 - - - - SFT2 domain containing 2 [Source:MGI Symbol;Acc:MGI:1917362]
96. Fndc3a ENSMUSG00000033487 1185 0.876 - 0.876 - - - - fibronectin type III domain containing 3A [Source:MGI Symbol;Acc:MGI:1196463]
97. Armc1 ENSMUSG00000027599 6408 0.876 - 0.876 - - - - armadillo repeat containing 1 [Source:MGI Symbol;Acc:MGI:1921502]
98. Tln2 ENSMUSG00000052698 938 0.875 - 0.875 - - - - talin 2 [Source:MGI Symbol;Acc:MGI:1917799]
99. Sec11c ENSMUSG00000024516 640 0.874 - 0.874 - - - - SEC11 homolog C, signal peptidase complex subunit [Source:MGI Symbol;Acc:MGI:1913536]
100. Eri3 ENSMUSG00000033423 3943 0.874 - 0.874 - - - - exoribonuclease 3 [Source:MGI Symbol;Acc:MGI:2153887]

There are 241 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA