Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Results for RPUSD4

Gene Name Gene ID Reads Annotation
RPUSD4 ENSGALG00000024326 3788 RNA pseudouridylate synthase domain containing 4 [Source:HGNC Symbol;Acc:HGNC:25898]











Genes with expression patterns similar to RPUSD4

Nr. Gene Name Gene ID Reads Σ scores E3 embryo E3 aorta E3 anterior slice 1 E3 anterior slice 2 E3 anterior slice 3 E3 posterior slice 1 E3 posterior slice 2 E3 posterior slice 3 E4 anterior slice 1 E4 posterior slice 1 Annotation
1. RPUSD4 ENSGALG00000024326 3788 10 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 RNA pseudouridylate synthase domain containing 4 [Source:HGNC Symbol;Acc:HGNC:25898]
2. LYVE1 ENSGALG00000005643 1230 1 - - - - - - 1.000 - - - lymphatic vessel endothelial hyaluronan receptor 1 [Source:NCBI gene;Acc:423038]
3. DNAJC10 ENSGALG00000008862 3114 1 - - - - - - 1.000 - - - DnaJ heat shock protein family (Hsp40) member C10 [Source:HGNC Symbol;Acc:HGNC:24637]
4. CRAC1A CRAC1A 5265 1 - - - - - - 1.000 - - -
5. LHFPL2 ENSGALG00000004437 500 1 - - - - - - 1.000 - - - LHFPL tetraspan subfamily member 2 [Source:HGNC Symbol;Acc:HGNC:6588]
6. MAPT ENSGALG00000000625 659 1 - - - - - - 1.000 - - - microtubule associated protein tau [Source:NCBI gene;Acc:426737]
7. LUZP2 ENSGALG00000030151 585 1 - - - - - - 1.000 - - - leucine zipper protein 2 [Source:NCBI gene;Acc:423001]
8. ATPAF2 ENSGALG00000004926 3393 1 - - - - - - 1.000 - - - ATP synthase mitochondrial F1 complex assembly factor 2 [Source:HGNC Symbol;Acc:HGNC:18802]
9. CSDE1 ENSGALG00000002139 1683 1 - - - - - - 1.000 - - - cold shock domain containing E1 [Source:NCBI gene;Acc:419886]
10. SNAPIN ENSGALG00000026796 11155 1 - - - - - - 1.000 - - - SNAP associated protein [Source:HGNC Symbol;Acc:HGNC:17145]
11. LOC425795 ENSGALG00000027696 2357 0.999 - - - - - - 0.999 - - - ectoderm-neural cortex protein 1-like, transcript variant X1
12. SAV1 ENSGALG00000012341 3313 0.999 - - - - - - 0.999 - - - salvador family WW domain containing protein 1 [Source:HGNC Symbol;Acc:HGNC:17795]
13. CHL1 ENSGALG00000037856 1565 0.999 - - - - - - 0.999 - - - cell adhesion molecule L1 like [Source:HGNC Symbol;Acc:HGNC:1939]
14. ZNF276 ENSGALG00000000513 2410 0.999 - - - - - - 0.999 - - - zinc finger protein 276 [Source:HGNC Symbol;Acc:HGNC:23330]
15. gga-mir-1723 ENSGALG00000025386 6662 0.998 - - - - - - 0.998 - - - gga-mir-1723 [Source:miRBase;Acc:MI0007460]
16. ENSGALG00000006730 ENSGALG00000006730 3695 0.998 - - - - - - 0.998 - - -
17. DIS3 ENSGALG00000016930 3696 0.998 - - - - - - 0.998 - - - DIS3 homolog, exosome endoribonuclease and 3'-5' exoribonuclease [Source:HGNC Symbol;Acc:HGNC:20604]
18. MMADHC ENSGALG00000012473 9026 0.997 - - - - - - 0.997 - - - methylmalonic aciduria and homocystinuria, cblD type [Source:NCBI gene;Acc:424311]
19. GSDMA ENSGALG00000013495 1650 0.997 - - - - - - 0.997 - - - gasdermin A [Source:NCBI gene;Acc:426132]
20. CCDC90B ENSGALG00000037072 5088 0.997 - - - - - - 0.997 - - - coiled-coil domain containing 90B [Source:HGNC Symbol;Acc:HGNC:28108]
21. GLT8D1 ENSGALG00000001642 4232 0.997 - - - - - - 0.997 - - - glycosyltransferase 8 domain containing 1 [Source:NCBI gene;Acc:415898]
22. GCAT ENSGALG00000012312 7906 0.997 - - - - - - 0.997 - - - glycine C-acetyltransferase [Source:HGNC Symbol;Acc:HGNC:4188]
23. C6H10ORF32 C6H10ORF32 7694 0.997 - - - - - - 0.997 - - -
24. GDPD4 ENSGALG00000000690 824 0.997 - - - - - - 0.997 - - - glycerophosphodiester phosphodiesterase domain containing 4 [Source:HGNC Symbol;Acc:HGNC:24849]
25. GALNTL4 GALNTL4 3548 0.996 - - - - - - 0.996 - - -
26. PRKG1 ENSGALG00000003805 4654 0.996 - - - - - - 0.996 - - - protein kinase cGMP-dependent 1 [Source:HGNC Symbol;Acc:HGNC:9414]
27. APITD1 APITD1 11830 0.995 - - - - - - 0.995 - - -
28. SH3RF3 ENSGALG00000016810 2169 0.995 - - - - - - 0.995 - - - SH3 domain containing ring finger 3 [Source:HGNC Symbol;Acc:HGNC:24699]
29. LOC424109 ENSGALG00000008738 3932 0.995 - - - - - - 0.995 - - - alpha-aspartyl dipeptidase
30. TTF1 4214 0.994 - - - - - - 0.994 - - - transcription termination factor 1
31. MYBL2 ENSGALG00000003503 15875 0.993 - - - - - - 0.993 - - - MYB proto-oncogene like 2 [Source:NCBI gene;Acc:396258]
32. POLR2C ENSGALG00000001168 10703 0.992 - - - - - - 0.992 - - - RNA polymerase II subunit C [Source:NCBI gene;Acc:415635]
33. USO1 ENSGALG00000010878 9506 0.992 - - - - - - 0.992 - - - USO1 vesicle transport factor [Source:NCBI gene;Acc:422575]
34. FHL3 ENSGALG00000035187 9753 0.992 - - - - - - 0.992 - - - four and a half LIM domains 3 [Source:HGNC Symbol;Acc:HGNC:3704]
35. COMMD8 ENSGALG00000026279 13509 0.992 - - - - - - 0.992 - - - COMM domain containing 8 [Source:NCBI gene;Acc:422769]
36. CCAR1 ENSGALG00000004108 13219 0.99 - - - - - - 0.990 - - - cell division cycle and apoptosis regulator 1 [Source:HGNC Symbol;Acc:HGNC:24236]
37. CTNNBL1 ENSGALG00000006817 6765 0.99 - - - - - - 0.990 - - - catenin beta like 1 [Source:HGNC Symbol;Acc:HGNC:15879]
38. SPINT1 ENSGALG00000008469 5735 0.99 - - - - - - 0.990 - - - serine peptidase inhibitor, Kunitz type 1, transcript variant X2
39. PSMD13 ENSGALG00000043684 14720 0.989 - - - - - - 0.989 - - - proteasome 26S subunit, non-ATPase 13 [Source:HGNC Symbol;Acc:HGNC:9558]
40. SERBP1 ENSGALG00000011229 30489 0.989 - - - - - - 0.989 - - - SERPINE1 mRNA binding protein 1 [Source:NCBI gene;Acc:424706]
41. NOB1 ENSGALG00000000693 15442 0.987 - - - - - - 0.987 - - - NIN1 (RPN12) binding protein 1 homolog [Source:HGNC Symbol;Acc:HGNC:29540]
42. TP53INP1 ENSGALG00000041353 6890 0.987 - - - - - - 0.987 - - - tumor protein p53 inducible nuclear protein 1 [Source:NCBI gene;Acc:420232]
43. FGD5 ENSGALG00000008546 4031 0.986 - - - - - - 0.986 - - - FYVE, RhoGEF and PH domain containing 5 [Source:HGNC Symbol;Acc:HGNC:19117]
44. ANLN 10479 0.985 - - - - - - 0.985 - - - anillin actin binding protein, transcript variant X2
45. PPP3CB ENSGALG00000005243 8794 0.983 - - - - - - 0.983 - - - Gallus gallus protein phosphatase 3 catalytic subunit beta (PPP3CB), mRNA. [Source:RefSeq mRNA;Acc:NM_001030340]
46. EPHA3 ENSGALG00000015403 9811 0.983 - - - - - - 0.983 - - - EPH receptor A3 [Source:NCBI gene;Acc:396402]
47. POLB ENSGALG00000040828 7462 0.981 - - - - - - 0.981 - - - DNA polymerase beta [Source:HGNC Symbol;Acc:HGNC:9174]
48. RNF13 ENSGALG00000010411 8749 0.981 - - - - - - 0.981 - - - ring finger protein 13 [Source:NCBI gene;Acc:396303]
49. CNBP 42704 0.979 - - - - - - 0.979 - - - CCHC-type zinc finger nucleic acid binding protein, transcript variant X7
50. MRPS15 ENSGALG00000044433 15356 0.979 - - - - - - 0.979 - - - mitochondrial ribosomal protein S15 [Source:HGNC Symbol;Acc:HGNC:14504]
51. CDC5L ENSGALG00000016704 22893 0.978 - - - - - - 0.978 - - - cell division cycle 5 like [Source:HGNC Symbol;Acc:HGNC:1743]
52. MRPS34 ENSGALG00000001792 14262 0.977 - - - - - - 0.977 - - - mitochondrial ribosomal protein S34 [Source:NCBI gene;Acc:426987]
53. ACTR6 ENSGALG00000040976 31271 0.977 - - - - - - 0.977 - - - ARP6 actin-related protein 6 homolog [Source:NCBI gene;Acc:395348]
54. ABRACL ENSGALG00000013826 19445 0.977 - - - - - - 0.977 - - - ABRA C-terminal like [Source:NCBI gene;Acc:770205]
55. MRPS36 ENSGALG00000014789 7584 0.975 - - - - - - 0.975 - - - mitochondrial ribosomal protein S36 [Source:HGNC Symbol;Acc:HGNC:16631]
56. MOB4 ENSGALG00000008128 10322 0.972 - - - - - - 0.972 - - - MOB family member 4, phocein [Source:NCBI gene;Acc:429007]
57. RPF1 ENSGALG00000008796 9809 0.969 - - - - - - 0.969 - - - ribosome production factor 1 homolog
58. MED1 ENSGALG00000001708 9556 0.969 - - - - - - 0.969 - - - mediator complex subunit 1 [Source:HGNC Symbol;Acc:HGNC:9234]
59. TRIB2 ENSGALG00000016457 17641 0.964 - - - - - - 0.964 - - - tribbles pseudokinase 2 [Source:NCBI gene;Acc:378919]
60. ENSGALG00000013825 ENSGALG00000013825 16473 0.958 - - - - - - 0.958 - - -
61. EXOSC7 ENSGALG00000030084 8654 0.957 - - - - - - 0.957 - - - exosome component 7 [Source:NCBI gene;Acc:420704]
62. EZH2 ENSGALG00000043399 15881 0.952 - - - - - - 0.952 - - - enhancer of zeste 2 polycomb repressive complex 2 subunit [Source:HGNC Symbol;Acc:HGNC:3527]
63. PELI1 ENSGALG00000008837 11561 0.951 - - - - - - 0.951 - - - pellino E3 ubiquitin protein ligase 1 [Source:NCBI gene;Acc:421279]
64. MRPS26 ENSGALG00000014118 27422 0.948 - - - - - - 0.948 - - - mitochondrial ribosomal protein S26 [Source:NCBI gene;Acc:426561]
65. SNX17 ENSGALG00000032468 13519 0.947 - - - - - - 0.947 - - - sorting nexin 17 [Source:HGNC Symbol;Acc:HGNC:14979]
66. CCT5 ENSGALG00000013041 56190 0.947 - - - - - - 0.947 - - - chaperonin containing TCP1 subunit 5 [Source:NCBI gene;Acc:420930]
67. TAF12 ENSGALG00000000991 8709 0.947 - - - - - - 0.947 - - - TATA-box binding protein associated factor 12 [Source:NCBI gene;Acc:419585]
68. LOC407092 ENSGALG00000013809 10706 0.945 - - - - - - 0.945 - - - AD012Z, transcript variant X5
69. STAG2 ENSGALG00000008482 13629 0.944 - - - - - - 0.944 - - - stromal antigen 2 [Source:HGNC Symbol;Acc:HGNC:11355]
70. ZDHHC6 ENSGALG00000008870 16575 0.94 - - - - - - 0.940 - - - zinc finger DHHC-type containing 6 [Source:HGNC Symbol;Acc:HGNC:19160]
71. BUB3 ENSGALG00000009681 36055 0.938 - - - - - - 0.938 - - - BUB3, mitotic checkpoint protein [Source:NCBI gene;Acc:423949]
72. VDAC3 ENSGALG00000041463 21595 0.937 - - - - - - 0.937 - - - voltage dependent anion channel 3, transcript variant X9
73. TPI1 ENSGALG00000014526 43273 0.937 - - - - - - 0.937 - - - triosephosphate isomerase 1 [Source:NCBI gene;Acc:396435]
74. DDX18 ENSGALG00000012147 12463 0.936 - - - - - - 0.936 - - - DEAD-box helicase 18 [Source:HGNC Symbol;Acc:HGNC:2741]
75. TBL1X ENSGALG00000040006 28597 0.933 - - - - - - 0.933 - - - transducin beta like 1 X-linked [Source:NCBI gene;Acc:426045]
76. ENSGALG00000000360 ENSGALG00000000360 15320 0.928 - - - - - - 0.928 - - -
77. PRDX1 ENSGALG00000010243 151918 0.922 - - - - - - 0.922 - - - peroxiredoxin 1 [Source:NCBI gene;Acc:424598]
78. HDLBP ENSGALG00000005823 24636 0.914 - - - - - - 0.914 - - - high density lipoprotein binding protein [Source:NCBI gene;Acc:395984]
79. TRA2A ENSGALG00000010973 37101 0.912 - - - - - - 0.912 - - - transformer 2 alpha homolog [Source:NCBI gene;Acc:420618]
80. WLS ENSGALG00000011238 20969 0.896 - - - - - - 0.896 - - - wntless Wnt ligand secretion mediator [Source:NCBI gene;Acc:424707]
81. CHPKCI CHPKCI 36217 0.885 - - - - - - 0.885 - - -
82. SNRPB2 28675 0.885 - - - - - - 0.885 - - - small nuclear ribonucleoprotein polypeptide B2
83. ARGLU1 ENSGALG00000016855 25633 0.867 - - - - - - 0.867 - - - arginine and glutamate rich 1 [Source:NCBI gene;Acc:418765]
84. CDC27 ENSGALG00000000596 12014 0.842 - - - - - - 0.842 - - - cell division cycle 27 [Source:NCBI gene;Acc:419960]
85. SAAL1 ENSGALG00000026111 8340 0.839 - - - - - - 0.839 - - - serum amyloid A like 1
86. HBE 329974 0.827 - - - - - - 0.827 - - - hemoglobin subunit epsilon
87. RPS25 ENSGALG00000007699 156127 0.824 - - - - - - 0.824 - - - ribosomal protein S25 [Source:HGNC Symbol;Acc:HGNC:10413]
88. UBE2N ENSGALG00000030515 32059 0.819 - - - - - - 0.819 - - - ubiquitin conjugating enzyme E2 N [Source:NCBI gene;Acc:417898]
89. ST13 ENSGALG00000012007 25670 0.812 - - - - - - 0.812 - - - ST13, Hsp70 interacting protein [Source:NCBI gene;Acc:418003]
90. PRDX4 ENSGALG00000016357 32208 0.803 - - - - - - 0.803 - - - peroxiredoxin 4 [Source:HGNC Symbol;Acc:HGNC:17169]
91. UBAP2L ENSGALG00000024094 853 0.765 - - 0.765 - - - - - - - ubiquitin associated protein 2 like [Source:HGNC Symbol;Acc:HGNC:29877]
92. BRIX1 ENSGALG00000003373 27878 0.765 - - - - - - 0.765 - - - BRX1, biogenesis of ribosomes [Source:NCBI gene;Acc:427433]
93. HNRNPU ENSGALG00000010671 56560 0.764 - - - - - - 0.764 - - - heterogeneous nuclear ribonucleoprotein U [Source:HGNC Symbol;Acc:HGNC:5048]
94. SUMF1 ENSGALG00000008286 941 0.762 - - - - - - - 0.762 - - sulfatase modifying factor 1 [Source:HGNC Symbol;Acc:HGNC:20376]
95. NUPL1 NUPL1 8197 0.754 - - - - - - - - 0.754 -
96. CKAP4 ENSGALG00000012659 36398 0.748 - - - - - - 0.748 - - - cytoskeleton associated protein 4 [Source:HGNC Symbol;Acc:HGNC:16991]
97. METTL15 ENSGALG00000012153 233 0.743 - - - - - - - 0.743 - - methyltransferase like 15 [Source:NCBI gene;Acc:421606]
98. MKRN2 ENSGALG00000004991 596 0.74 - - - - - - - 0.740 - - makorin ring finger protein 2 [Source:NCBI gene;Acc:374162]
99. DAZAP1 ENSGALG00000015200 1731 0.733 - - - - - - - 0.733 - - DAZ associated protein 1 [Source:NCBI gene;Acc:427266]
100. ENSGALG00000003030 ENSGALG00000003030 795 0.72 - - - - - 0.720 - - - -

There are 7 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA