Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Results for RPF1

Gene Name Gene ID Reads Annotation
RPF1 ENSGALG00000008796 9809 ribosome production factor 1 homolog











Genes with expression patterns similar to RPF1

Nr. Gene Name Gene ID Reads Σ scores E3 embryo E3 aorta E3 anterior slice 1 E3 anterior slice 2 E3 anterior slice 3 E3 posterior slice 1 E3 posterior slice 2 E3 posterior slice 3 E4 anterior slice 1 E4 posterior slice 1 Annotation
1. RPF1 ENSGALG00000008796 9809 10 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 ribosome production factor 1 homolog
2. TP53INP1 ENSGALG00000041353 6890 2.733 - - - - 0.851 - 0.958 0.924 - - tumor protein p53 inducible nuclear protein 1 [Source:NCBI gene;Acc:420232]
3. PPP3CB ENSGALG00000005243 8794 1.934 - - - - - - 0.991 0.943 - - Gallus gallus protein phosphatase 3 catalytic subunit beta (PPP3CB), mRNA. [Source:RefSeq mRNA;Acc:NM_001030340]
4. GALNTL4 GALNTL4 3548 1.898 - - - - 0.917 - 0.981 - - -
5. NDUFAF2 ENSGALG00000027564 7302 1.832 - - - - 0.904 - - 0.928 - - NADH:ubiquinone oxidoreductase complex assembly factor 2 [Source:NCBI gene;Acc:769549]
6. PELI1 ENSGALG00000008837 11561 1.807 - - - - 0.830 - 0.977 - - - pellino E3 ubiquitin protein ligase 1 [Source:NCBI gene;Acc:421279]
7. USO1 ENSGALG00000010878 9506 1.805 - - - 0.820 - - 0.985 - - - USO1 vesicle transport factor [Source:NCBI gene;Acc:422575]
8. EZH2 ENSGALG00000043399 15881 1.785 - - - - 0.830 - 0.955 - - - enhancer of zeste 2 polycomb repressive complex 2 subunit [Source:HGNC Symbol;Acc:HGNC:3527]
9. NUPL1 NUPL1 8197 1.702 - - - - 0.862 - - 0.840 - -
10. COG7 ENSGALG00000006156 4072 1.671 - - - 0.814 - - - 0.857 - - component of oligomeric golgi complex 7 [Source:NCBI gene;Acc:416578]
11. GPATCH1 ENSGALG00000004839 6455 1.664 - - - 0.767 - - - 0.897 - - G-patch domain containing 1 [Source:HGNC Symbol;Acc:HGNC:24658]
12. ST5 6869 1.658 - - - 0.725 - - - 0.933 - - suppression of tumorigenicity 5, transcript variant X1
13. TMEFF1 ENSGALG00000013212 4222 1.656 - - - 0.729 - - - 0.927 - - transmembrane protein with EGF-like and two follistatin-like domains 1
14. WLS ENSGALG00000011238 20969 1.633 - - - - 0.725 - 0.908 - - - wntless Wnt ligand secretion mediator [Source:NCBI gene;Acc:424707]
15. GTF2B ENSGALG00000006205 6950 1.606 - - - 0.713 0.893 - - - - - general transcription factor IIB [Source:HGNC Symbol;Acc:HGNC:4648]
16. DBNDD2 ENSGALG00000003921 8301 1.6 - - - 0.828 - - - 0.772 - - dysbindin domain containing 2 [Source:HGNC Symbol;Acc:HGNC:15881]
17. SRI ENSGALG00000008985 13865 1.597 - - - 0.788 - - - 0.809 - - sorcin [Source:NCBI gene;Acc:420538]
18. HBE 329974 1.535 - - - 0.730 - - 0.805 - - - hemoglobin subunit epsilon
19. AP1M1 ENSGALG00000003959 31761 1.513 - - - 0.730 0.783 - - - - - adaptor related protein complex 1 subunit mu 1 [Source:NCBI gene;Acc:420149]
20. CDC5L ENSGALG00000016704 22893 0.993 - - - - - - 0.993 - - - cell division cycle 5 like [Source:HGNC Symbol;Acc:HGNC:1743]
21. ABRACL ENSGALG00000013826 19445 0.991 - - - - - - 0.991 - - - ABRA C-terminal like [Source:NCBI gene;Acc:770205]
22. CNBP 42704 0.987 - - - - - - 0.987 - - - CCHC-type zinc finger nucleic acid binding protein, transcript variant X7
23. MOB4 ENSGALG00000008128 10322 0.986 - - - - - - 0.986 - - - MOB family member 4, phocein [Source:NCBI gene;Acc:429007]
24. MRPS15 ENSGALG00000044433 15356 0.986 - - - - - - 0.986 - - - mitochondrial ribosomal protein S15 [Source:HGNC Symbol;Acc:HGNC:14504]
25. COMMD8 ENSGALG00000026279 13509 0.985 - - - - - - 0.985 - - - COMM domain containing 8 [Source:NCBI gene;Acc:422769]
26. MYBL2 ENSGALG00000003503 15875 0.985 - - - - - - 0.985 - - - MYB proto-oncogene like 2 [Source:NCBI gene;Acc:396258]
27. FHL3 ENSGALG00000035187 9753 0.984 - - - - - - 0.984 - - - four and a half LIM domains 3 [Source:HGNC Symbol;Acc:HGNC:3704]
28. RNF13 ENSGALG00000010411 8749 0.984 - - - - - - 0.984 - - - ring finger protein 13 [Source:NCBI gene;Acc:396303]
29. TBL1X ENSGALG00000040006 28597 0.984 - - - - - - 0.984 - - - transducin beta like 1 X-linked [Source:NCBI gene;Acc:426045]
30. SERBP1 ENSGALG00000011229 30489 0.983 - - - - - - 0.983 - - - SERPINE1 mRNA binding protein 1 [Source:NCBI gene;Acc:424706]
31. TTF1 4214 0.982 - - - - - - 0.982 - - - transcription termination factor 1
32. CTNNBL1 ENSGALG00000006817 6765 0.981 - - - - - - 0.981 - - - catenin beta like 1 [Source:HGNC Symbol;Acc:HGNC:15879]
33. LOC424109 ENSGALG00000008738 3932 0.981 - - - - - - 0.981 - - - alpha-aspartyl dipeptidase
34. ENSGALG00000013825 ENSGALG00000013825 16473 0.98 - - - - - - 0.980 - - -
35. MRPS36 ENSGALG00000014789 7584 0.98 - - - - - - 0.980 - - - mitochondrial ribosomal protein S36 [Source:HGNC Symbol;Acc:HGNC:16631]
36. CCDC90B ENSGALG00000037072 5088 0.98 - - - - - - 0.980 - - - coiled-coil domain containing 90B [Source:HGNC Symbol;Acc:HGNC:28108]
37. GCAT ENSGALG00000012312 7906 0.98 - - - - - - 0.980 - - - glycine C-acetyltransferase [Source:HGNC Symbol;Acc:HGNC:4188]
38. EPHA3 ENSGALG00000015403 9811 0.979 - - - - - - 0.979 - - - EPH receptor A3 [Source:NCBI gene;Acc:396402]
39. C6H10ORF32 C6H10ORF32 7694 0.979 - - - - - - 0.979 - - -
40. CCT5 ENSGALG00000013041 56190 0.979 - - - - - - 0.979 - - - chaperonin containing TCP1 subunit 5 [Source:NCBI gene;Acc:420930]
41. CCAR1 ENSGALG00000004108 13219 0.978 - - - - - - 0.978 - - - cell division cycle and apoptosis regulator 1 [Source:HGNC Symbol;Acc:HGNC:24236]
42. MMADHC ENSGALG00000012473 9026 0.978 - - - - - - 0.978 - - - methylmalonic aciduria and homocystinuria, cblD type [Source:NCBI gene;Acc:424311]
43. PRKG1 ENSGALG00000003805 4654 0.978 - - - - - - 0.978 - - - protein kinase cGMP-dependent 1 [Source:HGNC Symbol;Acc:HGNC:9414]
44. ACTR6 ENSGALG00000040976 31271 0.977 - - - - - - 0.977 - - - ARP6 actin-related protein 6 homolog [Source:NCBI gene;Acc:395348]
45. GLT8D1 ENSGALG00000001642 4232 0.977 - - - - - - 0.977 - - - glycosyltransferase 8 domain containing 1 [Source:NCBI gene;Acc:415898]
46. gga-mir-1723 ENSGALG00000025386 6662 0.976 - - - - - - 0.976 - - - gga-mir-1723 [Source:miRBase;Acc:MI0007460]
47. ENSGALG00000006730 ENSGALG00000006730 3695 0.976 - - - - - - 0.976 - - -
48. APITD1 APITD1 11830 0.975 - - - - - - 0.975 - - -
49. ANLN 10479 0.975 - - - - - - 0.975 - - - anillin actin binding protein, transcript variant X2
50. DIS3 ENSGALG00000016930 3696 0.975 - - - - - - 0.975 - - - DIS3 homolog, exosome endoribonuclease and 3'-5' exoribonuclease [Source:HGNC Symbol;Acc:HGNC:20604]
51. POLR2C ENSGALG00000001168 10703 0.974 - - - - - - 0.974 - - - RNA polymerase II subunit C [Source:NCBI gene;Acc:415635]
52. MRPS26 ENSGALG00000014118 27422 0.974 - - - - - - 0.974 - - - mitochondrial ribosomal protein S26 [Source:NCBI gene;Acc:426561]
53. FGD5 ENSGALG00000008546 4031 0.973 - - - - - - 0.973 - - - FYVE, RhoGEF and PH domain containing 5 [Source:HGNC Symbol;Acc:HGNC:19117]
54. GPS1 ENSGALG00000002827 8433 0.973 - - - - - - - 0.973 - - G protein pathway suppressor 1 [Source:NCBI gene;Acc:417382]
55. POLB ENSGALG00000040828 7462 0.973 - - - - - - 0.973 - - - DNA polymerase beta [Source:HGNC Symbol;Acc:HGNC:9174]
56. ZNF276 ENSGALG00000000513 2410 0.973 - - - - - - 0.973 - - - zinc finger protein 276 [Source:HGNC Symbol;Acc:HGNC:23330]
57. LOC425795 ENSGALG00000027696 2357 0.972 - - - - - - 0.972 - - - ectoderm-neural cortex protein 1-like, transcript variant X1
58. NOB1 ENSGALG00000000693 15442 0.972 - - - - - - 0.972 - - - NIN1 (RPN12) binding protein 1 homolog [Source:HGNC Symbol;Acc:HGNC:29540]
59. PSMD13 ENSGALG00000043684 14720 0.971 - - - - - - 0.971 - - - proteasome 26S subunit, non-ATPase 13 [Source:HGNC Symbol;Acc:HGNC:9558]
60. ATPAF2 ENSGALG00000004926 3393 0.971 - - - - - - 0.971 - - - ATP synthase mitochondrial F1 complex assembly factor 2 [Source:HGNC Symbol;Acc:HGNC:18802]
61. SNAPIN ENSGALG00000026796 11155 0.971 - - - - - - 0.971 - - - SNAP associated protein [Source:HGNC Symbol;Acc:HGNC:17145]
62. SAV1 ENSGALG00000012341 3313 0.97 - - - - - - 0.970 - - - salvador family WW domain containing protein 1 [Source:HGNC Symbol;Acc:HGNC:17795]
63. CRAC1A CRAC1A 5265 0.969 - - - - - - 0.969 - - -
64. LYVE1 ENSGALG00000005643 1230 0.969 - - - - - - 0.969 - - - lymphatic vessel endothelial hyaluronan receptor 1 [Source:NCBI gene;Acc:423038]
65. DNAJC10 ENSGALG00000008862 3114 0.969 - - - - - - 0.969 - - - DnaJ heat shock protein family (Hsp40) member C10 [Source:HGNC Symbol;Acc:HGNC:24637]
66. RPUSD4 ENSGALG00000024326 3788 0.969 - - - - - - 0.969 - - - RNA pseudouridylate synthase domain containing 4 [Source:HGNC Symbol;Acc:HGNC:25898]
67. ENSGALG00000000360 ENSGALG00000000360 15320 0.969 - - - - - - 0.969 - - -
68. CHL1 ENSGALG00000037856 1565 0.969 - - - - - - 0.969 - - - cell adhesion molecule L1 like [Source:HGNC Symbol;Acc:HGNC:1939]
69. SPINT1 ENSGALG00000008469 5735 0.968 - - - - - - 0.968 - - - serine peptidase inhibitor, Kunitz type 1, transcript variant X2
70. LUZP2 ENSGALG00000030151 585 0.968 - - - - - - 0.968 - - - leucine zipper protein 2 [Source:NCBI gene;Acc:423001]
71. MAPT ENSGALG00000000625 659 0.968 - - - - - - 0.968 - - - microtubule associated protein tau [Source:NCBI gene;Acc:426737]
72. CSDE1 ENSGALG00000002139 1683 0.968 - - - - - - 0.968 - - - cold shock domain containing E1 [Source:NCBI gene;Acc:419886]
73. LHFPL2 ENSGALG00000004437 500 0.967 - - - - - - 0.967 - - - LHFPL tetraspan subfamily member 2 [Source:HGNC Symbol;Acc:HGNC:6588]
74. HDLBP ENSGALG00000005823 24636 0.967 - - - - - - 0.967 - - - high density lipoprotein binding protein [Source:NCBI gene;Acc:395984]
75. ZDHHC6 ENSGALG00000008870 16575 0.967 - - - - - - 0.967 - - - zinc finger DHHC-type containing 6 [Source:HGNC Symbol;Acc:HGNC:19160]
76. MRPS34 ENSGALG00000001792 14262 0.963 - - - - - - 0.963 - - - mitochondrial ribosomal protein S34 [Source:NCBI gene;Acc:426987]
77. BUB3 ENSGALG00000009681 36055 0.963 - - - - - - 0.963 - - - BUB3, mitotic checkpoint protein [Source:NCBI gene;Acc:423949]
78. GSDMA ENSGALG00000013495 1650 0.962 - - - - - - 0.962 - - - gasdermin A [Source:NCBI gene;Acc:426132]
79. GDPD4 ENSGALG00000000690 824 0.962 - - - - - - 0.962 - - - glycerophosphodiester phosphodiesterase domain containing 4 [Source:HGNC Symbol;Acc:HGNC:24849]
80. SH3RF3 ENSGALG00000016810 2169 0.961 - - - - - - 0.961 - - - SH3 domain containing ring finger 3 [Source:HGNC Symbol;Acc:HGNC:24699]
81. PRDX1 ENSGALG00000010243 151918 0.956 - - - - - - 0.956 - - - peroxiredoxin 1 [Source:NCBI gene;Acc:424598]
82. APAF1 ENSGALG00000011531 3102 0.954 - - - - - - - 0.954 - - apoptotic peptidase activating factor 1 [Source:HGNC Symbol;Acc:HGNC:576]
83. DBI ENSGALG00000012112 6910 0.953 - - - - 0.953 - - - - - diazepam binding inhibitor, acyl-CoA binding protein [Source:NCBI gene;Acc:395263]
84. TRIB2 ENSGALG00000016457 17641 0.948 - - - - - - 0.948 - - - tribbles pseudokinase 2 [Source:NCBI gene;Acc:378919]
85. PPP2R5C ENSGALG00000029996 5759 0.948 - - - - - - - 0.948 - - protein phosphatase 2 regulatory subunit B'gamma [Source:NCBI gene;Acc:423460]
86. DCAF7 ENSGALG00000000510 8681 0.948 - - - - - - - 0.948 - - DDB1 and CUL4 associated factor 7 [Source:NCBI gene;Acc:771554]
87. HMGN1 ENSGALG00000016067 17375 0.947 - - - - 0.947 - - - - - high mobility group nucleosome binding domain 1 [Source:NCBI gene;Acc:395999]
88. USP9X ENSGALG00000016236 9419 0.947 - - - - - - - 0.947 - - ubiquitin specific peptidase 9, X-linked, transcript variant X3
89. DHFR ENSGALG00000026757 18478 0.947 - - - - - - - 0.947 - - dihydrofolate reductase [Source:NCBI gene;Acc:427317]
90. EXOSC7 ENSGALG00000030084 8654 0.945 - - - - - - 0.945 - - - exosome component 7 [Source:NCBI gene;Acc:420704]
91. TPI1 ENSGALG00000014526 43273 0.945 - - - - - - 0.945 - - - triosephosphate isomerase 1 [Source:NCBI gene;Acc:396435]
92. LONP1 ENSGALG00000040492 7133 0.943 - - - - - - - 0.943 - - lon peptidase 1, mitochondrial [Source:HGNC Symbol;Acc:HGNC:9479]
93. NABP1 ENSGALG00000025884 4195 0.94 - - - - - - - 0.940 - - nucleic acid binding protein 1 [Source:HGNC Symbol;Acc:HGNC:26232]
94. MED1 ENSGALG00000001708 9556 0.94 - - - - - - 0.940 - - - mediator complex subunit 1 [Source:HGNC Symbol;Acc:HGNC:9234]
95. DDX18 ENSGALG00000012147 12463 0.939 - - - - - - 0.939 - - - DEAD-box helicase 18 [Source:HGNC Symbol;Acc:HGNC:2741]
96. GTF2H3 ENSGALG00000023682 9914 0.939 - - - - 0.939 - - - - - general transcription factor IIH subunit 3 [Source:NCBI gene;Acc:771837]
97. TRA2A ENSGALG00000010973 37101 0.938 - - - - - - 0.938 - - - transformer 2 alpha homolog [Source:NCBI gene;Acc:420618]
98. TRNT1 ENSGALG00000017368 11932 0.938 - - - - - - - 0.938 - - tRNA nucleotidyl transferase 1 [Source:HGNC Symbol;Acc:HGNC:17341]
99. PI4KA ENSGALG00000040756 3973 0.937 - - - - - - - 0.937 - - phosphatidylinositol 4-kinase alpha [Source:HGNC Symbol;Acc:HGNC:8983]
100. THOC1 ENSGALG00000014915 5846 0.937 - - - - 0.937 - - - - - Gallus gallus THO complex 1 (THOC1), transcript variant 2, mRNA. [Source:RefSeq mRNA;Acc:NM_001321610]

There are 465 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA