Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Results for LHX9

Gene Name Gene ID Reads Annotation
LHX9 ENSGALG00000002223 12 LIM homeobox 9 [Source:NCBI gene;Acc:396397]











Genes with expression patterns similar to LHX9

Nr. Gene Name Gene ID Reads Σ scores E3 embryo E3 aorta E3 anterior slice 1 E3 anterior slice 2 E3 anterior slice 3 E3 posterior slice 1 E3 posterior slice 2 E3 posterior slice 3 E4 anterior slice 1 E4 posterior slice 1 Annotation
1. LHX9 ENSGALG00000002223 12 2 - - - 1.000 - - - - - 1.000 LIM homeobox 9 [Source:NCBI gene;Acc:396397]
2. STOML3 ENSGALG00000017039 6 0.987 - - - - - - - - - 0.987 stomatin like 3 [Source:HGNC Symbol;Acc:HGNC:19420]
3. CSF3 ENSGALG00000030907 11 0.987 - - - - - - - - - 0.987 colony stimulating factor 3 [Source:NCBI gene;Acc:396216]
4. CCR5 ENSGALG00000037077 23 0.986 - - - - - - - - - 0.986 C-C motif chemokine receptor 5 [Source:NCBI gene;Acc:420695]
5. CHST8 ENSGALG00000004903 16 0.985 - - - - - - - - - 0.985 carbohydrate sulfotransferase 8 [Source:HGNC Symbol;Acc:HGNC:15993]
6. NCX1 NCX1 9 0.985 - - - - - - - - - 0.985
7. NOX3 ENSGALG00000013659 4 0.985 - - - - - - - - - 0.985 NADPH oxidase 3 [Source:HGNC Symbol;Acc:HGNC:7890]
8. ENSGALG00000012920 ENSGALG00000012920 8 0.985 - - - - - - - - - 0.985
9. ROS1 ENSGALG00000014913 7 0.985 - - - - - - - - - 0.985 ROS proto-oncogene 1, receptor tyrosine kinase [Source:NCBI gene;Acc:396192]
10. SCT ENSGALG00000034822, ENSGALG00000037020 14 0.985 - - - - - - - - - 0.985 secretin, transcript variant X6
11. IFNG ENSGALG00000009903 5 0.985 - - - - - - - - - 0.985 interferon gamma [Source:NCBI gene;Acc:396054]
12. C2 ENSGALG00000035721 5 0.985 - - - - - - - - - 0.985 complement C2 [Source:HGNC Symbol;Acc:HGNC:1248]
13. MUC4 4 0.985 - - - - - - - - - 0.985 mucin 4, cell surface associated, transcript variant X5
14. GPR12 ENSGALG00000017102 4 0.985 - - - - - - - - - 0.985 G protein-coupled receptor 12 [Source:HGNC Symbol;Acc:HGNC:4466]
15. CFH ENSGALG00000002431 31 0.98 - - - - - - - - - 0.980 complement factor H, transcript variant X1
16. DENND1B ENSGALG00000002246 6 0.977 - - - - - - - - - 0.977 DENN domain containing 1B [Source:HGNC Symbol;Acc:HGNC:28404]
17. SPINK4 ENSGALG00000043964 50 0.975 - - - - - - - - - 0.975 serine peptidase inhibitor, Kazal type 4 [Source:HGNC Symbol;Acc:HGNC:16646]
18. CTNNA3 ENSGALG00000002845 127 0.975 - - - - - - - - - 0.975 catenin alpha 3 [Source:NCBI gene;Acc:423648]
19. gga-mir-1600 ENSGALG00000025438 248 0.972 - - - - - - - - - 0.972 gga-mir-1600 [Source:miRBase;Acc:MI0007327]
20. ISPD ENSGALG00000010795 7 0.967 - - - - - - - - - 0.967 isoprenoid synthase domain containing [Source:HGNC Symbol;Acc:HGNC:37276]
21. LOC100858777 ENSGALG00000027624 58 0.967 - - - - - - - - - 0.967 rhodopsin, GQ-coupled-like
22. ZNF770 ENSGALG00000009817 27 0.967 - - - - - - - - - 0.967 zinc finger protein 770 [Source:HGNC Symbol;Acc:HGNC:26061]
23. SERPINE3 ENSGALG00000017017 32 0.963 - - - - - - - - - 0.963 serpin family E member 3 [Source:HGNC Symbol;Acc:HGNC:24774]
24. ZC3H7B ENSGALG00000011965 6 0.962 - - - - - - - - - 0.962 zinc finger CCCH-type containing 7B [Source:HGNC Symbol;Acc:HGNC:30869]
25. CPNE7 ENSGALG00000000507 54 0.96 - - - - - - - - - 0.960 copine 7 [Source:HGNC Symbol;Acc:HGNC:2320]
26. DNAH7 ENSGALG00000007841 32 0.959 - - - - - - - - - 0.959 dynein axonemal heavy chain 7 [Source:HGNC Symbol;Acc:HGNC:18661]
27. ECSCR ENSGALG00000024379 313 0.955 - - - - - - - - - 0.955 endothelial cell surface expressed chemotaxis and apoptosis regulator, transcript variant X2
28. SYNJ2BP ENSGALG00000009387, ENSGALG00000035537 124 0.955 - - - 0.955 - - - - - - synaptojanin 2 binding protein, transcript variant X2
29. LRRC3B ENSGALG00000011314 26 0.955 - - - - - - - - - 0.955 leucine rich repeat containing 3B [Source:HGNC Symbol;Acc:HGNC:28105]
30. SUB1L1 ENSGALG00000027147 73 0.955 - - - - - - - - - 0.955 SUB1 homolog (S. cerevisiae)-like 1
31. PLIN3 ENSGALG00000044632 370 0.954 - - - - - - - - - 0.954 perilipin 3, transcript variant X2
32. ADAMTS5 ENSGALG00000015795 6 0.95 - - - - - - - - - 0.950 ADAM metallopeptidase with thrombospondin type 1 motif 5 [Source:HGNC Symbol;Acc:HGNC:221]
33. TTC9 ENSGALG00000017652 16 0.95 - - - - - - - - - 0.950 tetratricopeptide repeat domain 9 [Source:HGNC Symbol;Acc:HGNC:20267]
34. ENSGALG00000001629 ENSGALG00000001629 31 0.948 - - - - - - - - - 0.948
35. PPTC7 ENSGALG00000004550 154 0.947 - - - - - - - - - 0.947 PTC7 protein phosphatase homolog [Source:HGNC Symbol;Acc:HGNC:30695]
36. ESM1 ENSGALG00000027707 328 0.945 - - - - - - - - - 0.945 endothelial cell specific molecule 1 [Source:HGNC Symbol;Acc:HGNC:3466]
37. TERF2IP ENSGALG00000000903 41 0.941 - - - - - - - - - 0.941 TERF2 interacting protein [Source:NCBI gene;Acc:395122]
38. SDSL ENSGALG00000008317 55 0.938 - - - - - - - - - 0.938 serine dehydratase like [Source:NCBI gene;Acc:417030]
39. AQP1 ENSGALG00000005209 111 0.937 - - - - - - - - - 0.937 aquaporin 1 [Source:NCBI gene;Acc:420384]
40. SPINK5 SPINK5 195 0.937 - - - - - - - - - 0.937
41. RGS6 ENSGALG00000009368 19 0.936 - - - - - - - - - 0.936 regulator of G-protein signaling 6 [Source:NCBI gene;Acc:395618]
42. MISP 52 0.935 - - - - - - - - - 0.935 mitotic spindle positioning, transcript variant X2
43. LRRC49 ENSGALG00000004059 29 0.933 - - - - - - - - - 0.933 leucine rich repeat containing 49 [Source:HGNC Symbol;Acc:HGNC:25965]
44. RBBP6_1 ENSGALG00000006043 26 0.925 - - - - - - - - - 0.925 RB binding protein 6, ubiquitin ligase [Source:HGNC Symbol;Acc:HGNC:9889]
45. MMEL1 ENSGALG00000001115 46 0.923 - - - - - - - - - 0.923 membrane metalloendopeptidase like 1 [Source:HGNC Symbol;Acc:HGNC:14668]
46. SNAPC1 ENSGALG00000011868 65 0.921 - - - - - - - - - 0.921 small nuclear RNA activating complex polypeptide 1 [Source:HGNC Symbol;Acc:HGNC:11134]
47. CDK6 ENSGALG00000009476 17 0.915 - - - 0.915 - - - - - - cyclin dependent kinase 6 [Source:NCBI gene;Acc:420558]
48. AK5 ENSGALG00000031652 12 0.909 - - - - - - - - - 0.909 adenylate kinase 5 [Source:HGNC Symbol;Acc:HGNC:365]
49. ATXN7L1 ENSGALG00000008115 84 0.906 - - - - - - - - - 0.906 ataxin 7 like 1 [Source:HGNC Symbol;Acc:HGNC:22210]
50. CCDC112 ENSGALG00000045092 38 0.904 - - - - - - - - - 0.904 coiled-coil domain containing 112 [Source:HGNC Symbol;Acc:HGNC:28599]
51. ENSGALG00000026371 ENSGALG00000026371 106 0.903 - - - - - - - - - 0.903
52. HACD4 ENSGALG00000028142 395 0.893 - - - - - - - - - 0.893 3-hydroxyacyl-CoA dehydratase 4 [Source:HGNC Symbol;Acc:HGNC:20920]
53. STAB2 32 0.892 - - - - - - - - - 0.892 stabilin 2
54. ENSGALG00000023119 ENSGALG00000023119 156 0.883 - - - - - - - - - 0.883
55. ENSGALG00000007055 ENSGALG00000007055 60 0.88 - - - - - - - - - 0.880
56. TCIRG1 ENSGALG00000036069 1117 0.879 - - - - - - - - - 0.879 T-cell immune regulator 1, ATPase H+ transporting V0 subunit a3 [Source:NCBI gene;Acc:395472]
57. ENSGALG00000023939 ENSGALG00000023939 91 0.879 - - - - - - - - - 0.879
58. NANOG ENSGALG00000027772 89 0.868 - - - - - - - - - 0.868 Nanog homeobox [Source:NCBI gene;Acc:100272166]
59. ZNF22 ZNF22 25 0.865 - - - - - - - - - 0.865
60. XRCC4 ENSGALG00000015620 28 0.864 - - - - - - - - - 0.864 X-ray repair cross complementing 4 [Source:HGNC Symbol;Acc:HGNC:12831]
61. SERTAD4 ENSGALG00000026359 400 0.861 - - - - - - - - - 0.861 SERTA domain containing 4 [Source:HGNC Symbol;Acc:HGNC:25236]
62. ADH6 ENSGALG00000020160 29 0.86 - - - - - - - - - 0.860 alcohol dehydrogenase 6 (class V) [Source:NCBI gene;Acc:395979]
63. PARVA ENSGALG00000005438 91 0.859 - - - - - - - - - 0.859 parvin alpha [Source:HGNC Symbol;Acc:HGNC:14652]
64. PIP5K1A ENSGALG00000027372 137 0.857 - - - - - - - - - 0.857 phosphatidylinositol-4-phosphate 5-kinase type 1 alpha [Source:NCBI gene;Acc:429983]
65. CD93 ENSGALG00000008359 235 0.855 - - - - - - - - - 0.855 CD93 molecule [Source:NCBI gene;Acc:421234]
66. EML5 ENSGALG00000010639 25 0.849 - - - - - - - - - 0.849 echinoderm microtubule associated protein like 5, transcript variant X1
67. IQUB ENSGALG00000008823 65 0.843 - - - - - - - - - 0.843 IQ motif and ubiquitin domain containing [Source:HGNC Symbol;Acc:HGNC:21995]
68. BICC1 ENSGALG00000036095 42 0.84 - - - - - - - - - 0.840 BicC family RNA binding protein 1 [Source:NCBI gene;Acc:423604]
69. ZFYVE26 ENSGALG00000028762 18 0.84 - - - - - - - - - 0.840 zinc finger FYVE-type containing 26 [Source:HGNC Symbol;Acc:HGNC:20761]
70. MYH7 ENSGALG00000035594 188 0.837 - - - - - - - - - 0.837 myosin, heavy chain 7, cardiac muscle, beta [Source:NCBI gene;Acc:395350]
71. PRSS35 ENSGALG00000015847 52 0.833 - - - - - - - - - 0.833 serine protease 35 [Source:HGNC Symbol;Acc:HGNC:21387]
72. FUCA2 ENSGALG00000013773 67 0.828 - - - - - - - - - 0.828 alpha-L-fucosidase 2 [Source:HGNC Symbol;Acc:HGNC:4008]
73. CLGN ENSGALG00000009826 54 0.826 - - - 0.826 - - - - - - calmegin [Source:HGNC Symbol;Acc:HGNC:2060]
74. FAM214B ENSGALG00000002069, ENSGALG00000038279 213 0.824 - - - - - - - - - 0.824 family with sequence similarity 214 member B, transcript variant X14
75. AGAP1 ENSGALG00000004045 47 0.821 - - - - - - - - - 0.821 ArfGAP with GTPase domain, ankyrin repeat and PH domain 1 [Source:HGNC Symbol;Acc:HGNC:16922]
76. TAF5L ENSGALG00000011098 17 0.813 - - - - - - - - - 0.813 TATA-box binding protein associated factor 5 like [Source:HGNC Symbol;Acc:HGNC:17304]
77. PIGQ ENSGALG00000001985 1584 0.809 - - - - - - - - - 0.809 phosphatidylinositol glycan anchor biosynthesis class Q [Source:HGNC Symbol;Acc:HGNC:14135]
78. TMCO4 ENSGALG00000004081 31 0.808 - - - - - - - - - 0.808 transmembrane and coiled-coil domains 4 [Source:HGNC Symbol;Acc:HGNC:27393]
79. GFPT2 ENSGALG00000039705 562 0.808 - - - - - - - - - 0.808 glutamine-fructose-6-phosphate transaminase 2 [Source:HGNC Symbol;Acc:HGNC:4242]
80. BACH1 ENSGALG00000015828 114 0.806 - - - - - - - - - 0.806 BTB domain and CNC homolog 1 [Source:HGNC Symbol;Acc:HGNC:935]
81. MFSD12 ENSGALG00000000795 1150 0.805 - - - - - - - - - 0.805 major facilitator superfamily domain containing 12 [Source:HGNC Symbol;Acc:HGNC:28299]
82. C8orf22 C8orf22 37 0.804 - - - - - - - - - 0.804
83. SOX13 ENSGALG00000000583 30 0.802 - - - - - - - - - 0.802 SRY-box 13 [Source:HGNC Symbol;Acc:HGNC:11192]
84. EDC4 ENSGALG00000040875 44 0.802 - - - - - - - - - 0.802 enhancer of mRNA decapping 4 [Source:HGNC Symbol;Acc:HGNC:17157]
85. RQCD1 RQCD1 110 0.801 - - - - - - - - - 0.801
86. NECAB1 ENSGALG00000029509 202 0.798 - - - - - - - - - 0.798 N-terminal EF-hand calcium binding protein 1 [Source:NCBI gene;Acc:420219]
87. RPAIN ENSGALG00000001666 2676 0.798 - - - - - - - - - 0.798 RPA interacting protein [Source:HGNC Symbol;Acc:HGNC:28641]
88. HPCAL4 ENSGALG00000003829 75 0.797 - - - - - - - - - 0.797 hippocalcin like 4 [Source:HGNC Symbol;Acc:HGNC:18212]
89. ASXL1 ENSGALG00000006612 273 0.794 - - - - - - - - - 0.794 ASXL transcriptional regulator 1 [Source:HGNC Symbol;Acc:HGNC:18318]
90. SLC45A2 ENSGALG00000003310 55 0.794 - - - - - - - - - 0.794 solute carrier family 45 member 2 [Source:NCBI gene;Acc:431665]
91. PI15 ENSGALG00000029264 21 0.792 - - - - - - - - - 0.792 peptidase inhibitor 15 [Source:NCBI gene;Acc:374241]
92. NUMBL ENSGALG00000016508 12 0.79 - - - - - - - - - 0.790 numb homolog (Drosophila)-like, transcript variant X2
93. SLCO5A1 ENSGALG00000029842 4510 0.783 - - - - - - - - - 0.783 solute carrier organic anion transporter family member 5A1 [Source:HGNC Symbol;Acc:HGNC:19046]
94. KCNQ5 ENSGALG00000037249 321 0.781 - - - - - - - - - 0.781 potassium voltage-gated channel subfamily Q member 5 [Source:HGNC Symbol;Acc:HGNC:6299]
95. ZAR1 ENSGALG00000035565 141 0.78 - - - - - - - - - 0.780 zygote arrest 1 [Source:HGNC Symbol;Acc:HGNC:20436]
96. RAF1 ENSGALG00000004998 327 0.78 - - - - - - - - - 0.780 Raf-1 proto-oncogene, serine/threonine kinase [Source:NCBI gene;Acc:396245]
97. MDM2 ENSGALG00000009942 397 0.78 - - - - - - - - - 0.780 MDM2 proto-oncogene [Source:NCBI gene;Acc:395609]
98. RYR3 ENSGALG00000009705 30 0.78 - - - - - - - - - 0.780 ryanodine receptor 3 [Source:NCBI gene;Acc:396111]
99. RNF168 ENSGALG00000006392 507 0.775 - - - - - - - - - 0.775 ring finger protein 168 [Source:HGNC Symbol;Acc:HGNC:26661]
100. SNRNP35 ENSGALG00000003318 1253 0.775 - - - - - - - - - 0.775 small nuclear ribonucleoprotein U11/U12 subunit 35 [Source:NCBI gene;Acc:416823]

There are 74 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA