Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Results for CHMP3

Gene Name Gene ID Reads Annotation
CHMP3 ENSGALG00000015805 11581 charged multivesicular body protein 3











Genes with expression patterns similar to CHMP3

Nr. Gene Name Gene ID Reads Σ scores E3 embryo E3 aorta E3 anterior slice 1 E3 anterior slice 2 E3 anterior slice 3 E3 posterior slice 1 E3 posterior slice 2 E3 posterior slice 3 E4 anterior slice 1 E4 posterior slice 1 Annotation
1. CHMP3 ENSGALG00000015805 11581 10 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 charged multivesicular body protein 3
2. NDUFB3 ENSGALG00000008239 15511 1.849 - - - - - - 0.882 0.967 - - NADH:ubiquinone oxidoreductase subunit B3 [Source:NCBI gene;Acc:424078]
3. PGAM5 ENSGALG00000002137 7700 1.753 - - - - - - 0.811 0.942 - - PGAM family member 5, mitochondrial serine/threonine protein phosphatase [Source:HGNC Symbol;Acc:HGNC:28763]
4. MARC1 ENSGALG00000009453 5675 1.753 - - - - - - 0.801 0.952 - - mitochondrial amidoxime reducing component 1 [Source:NCBI gene;Acc:428563]
5. PPCS ENSGALG00000004882 5759 1.743 - - - - - - 0.800 0.943 - - phosphopantothenoylcysteine synthetase [Source:HGNC Symbol;Acc:HGNC:25686]
6. gga-mir-1772 ENSGALG00000025300 2892 1.733 - - - - - - 0.807 0.926 - - gga-mir-1772 [Source:miRBase;Acc:MI0007515]
7. SMDT1 ENSGALG00000011897 9360 1.726 - - - - - - 0.792 0.934 - - single-pass membrane protein with aspartate rich tail 1 [Source:HGNC Symbol;Acc:HGNC:25055]
8. CHMP6 ENSGALG00000026428 18026 1.718 - - - - - - 0.747 0.971 - - charged multivesicular body protein 6 [Source:NCBI gene;Acc:428673]
9. HNRNPD ENSGALG00000011184 10686 1.692 - - - - - - 0.802 0.890 - - heterogeneous nuclear ribonucleoprotein D [Source:NCBI gene;Acc:422602]
10. SCO1 ENSGALG00000030475 7304 1.685 - - - - - - 0.728 0.957 - - SCO1, cytochrome c oxidase assembly protein [Source:HGNC Symbol;Acc:HGNC:10603]
11. SNAP29 ENSGALG00000040128 3581 1.673 - - - - - - 0.716 0.957 - - synaptosome associated protein 29 [Source:NCBI gene;Acc:416766]
12. GTF2A2 ENSGALG00000003793 5957 1.672 - - - - - - 0.785 0.887 - - general transcription factor IIA subunit 2 [Source:NCBI gene;Acc:770910]
13. MAST2 ENSGALG00000010313 2975 1.672 - - - - - - 0.727 0.945 - - microtubule associated serine/threonine kinase 2 [Source:HGNC Symbol;Acc:HGNC:19035]
14. MRPL20 ENSGALG00000001542 28764 1.668 - - - - - - 0.773 0.895 - - mitochondrial ribosomal protein L20 [Source:NCBI gene;Acc:770979]
15. NDUFAF1 ENSGALG00000008587 14779 1.659 - - - - - - 0.724 0.935 - - NADH:ubiquinone oxidoreductase complex assembly factor 1 [Source:HGNC Symbol;Acc:HGNC:18828]
16. PFDN1 ENSGALG00000000946 18822 1.653 - - - - - - 0.813 0.840 - - prefoldin subunit 1 [Source:NCBI gene;Acc:416142]
17. CNOT8 ENSGALG00000003950 8271 1.644 - - - - - - 0.830 0.814 - - CCR4-NOT transcription complex subunit 8 [Source:NCBI gene;Acc:416255]
18. TBL1XR1 ENSGALG00000039182 16983 1.63 - - - - - - 0.714 0.916 - - transducin beta like 1 X-linked receptor 1 [Source:NCBI gene;Acc:426284]
19. DLD ENSGALG00000007931 11011 1.597 - - - - - - 0.742 0.855 - - dihydrolipoamide dehydrogenase [Source:NCBI gene;Acc:417699]
20. UTP6 ENSGALG00000003260 4909 1.584 - - - - - - 0.717 0.867 - - UTP6, small subunit processome component [Source:NCBI gene;Acc:417405]
21. RUVBL1 ENSGALG00000005931 9379 1.581 - - - - - - 0.710 0.871 - - RuvB like AAA ATPase 1 [Source:NCBI gene;Acc:416022]
22. MED28 ENSGALG00000007138 7686 1.576 - - - - - - 0.754 0.822 - - mediator complex subunit 28 [Source:HGNC Symbol;Acc:HGNC:24628]
23. SART3 ENSGALG00000039472 4948 1.532 - - - - - - 0.766 0.766 - - squamous cell carcinoma antigen recognized by T cells 3 [Source:HGNC Symbol;Acc:HGNC:16860]
24. NAA38 ENSGALG00000045783 11229 1.464 - - - - - - 0.714 0.750 - - N(alpha)-acetyltransferase 38, NatC auxiliary subunit, transcript variant X3
25. MRPL18 ENSGALG00000011625 7855 0.96 - - - - - - - 0.960 - - mitochondrial ribosomal protein L18 [Source:HGNC Symbol;Acc:HGNC:14477]
26. CAMSAP2 ENSGALG00000002145 6109 0.958 - - - - - - - 0.958 - - calmodulin regulated spectrin associated protein family member 2 [Source:HGNC Symbol;Acc:HGNC:29188]
27. UBE2D1 ENSGALG00000021213 5876 0.957 - - - - - - - 0.957 - - ubiquitin conjugating enzyme E2 D1 [Source:NCBI gene;Acc:423641]
28. AHCTF1 ENSGALG00000010630 4809 0.956 - - - - - - - 0.956 - - AT-hook containing transcription factor 1 [Source:NCBI gene;Acc:421484]
29. BAG3 ENSGALG00000009433 6152 0.956 - - - - - - - 0.956 - - BCL2 associated athanogene 3 [Source:HGNC Symbol;Acc:HGNC:939]
30. VGLL4 ENSGALG00000004937 3762 0.955 - - - - - - - 0.955 - - vestigial like family member 4 [Source:NCBI gene;Acc:415962]
31. LATS2 4776 0.955 - - - - - - - 0.955 - - large tumor suppressor kinase 2
32. ERGIC2 ENSGALG00000007183 12870 0.954 - - - - - - - 0.954 - - ERGIC and golgi 2 [Source:NCBI gene;Acc:417697]
33. WASH1 WASH1 3240 0.952 - - - - - - - 0.952 - -
34. CKAP2 ENSGALG00000017025 25020 0.951 - - - - - - - 0.951 - - cytoskeleton associated protein 2 [Source:NCBI gene;Acc:418882]
35. KDM4A ENSGALG00000010074 7219 0.951 - - - - - - - 0.951 - - lysine demethylase 4A
36. CDC42BPA ENSGALG00000009158 3926 0.95 - - - - - - - 0.950 - - CDC42 binding protein kinase alpha [Source:NCBI gene;Acc:416746]
37. TRIM24 ENSGALG00000012823 2725 0.949 - - - - - - - 0.949 - - tripartite motif containing 24 [Source:HGNC Symbol;Acc:HGNC:11812]
38. EFHD1 ENSGALG00000001428 2831 0.949 - - - - - - - 0.949 - - EF-hand domain family member D1 [Source:NCBI gene;Acc:424741]
39. TSC22D2 ENSGALG00000027591 6594 0.948 - - - - - - - 0.948 - - TSC22 domain family member 2 [Source:HGNC Symbol;Acc:HGNC:29095]
40. FBXO33 ENSGALG00000010192 2917 0.947 - - - - - - - 0.947 - - F-box protein 33 [Source:HGNC Symbol;Acc:HGNC:19833]
41. MRPS23 ENSGALG00000005559 10360 0.946 - - - - - - - 0.946 - - mitochondrial ribosomal protein S23 [Source:HGNC Symbol;Acc:HGNC:14509]
42. LIG3 ENSGALG00000002288 7198 0.945 - - - - - - - 0.945 - - DNA ligase 3 [Source:NCBI gene;Acc:417530]
43. TXNDC5 ENSGALG00000012784 4678 0.945 - - - - - - - 0.945 - - thioredoxin domain containing 5 [Source:NCBI gene;Acc:420867]
44. SLC35E3 ENSGALG00000009940 8560 0.943 - - - - - - - 0.943 - - solute carrier family 35 member E3 [Source:NCBI gene;Acc:417842]
45. TMEM59 ENSGALG00000010746 4669 0.942 - - - - - - - 0.942 - - transmembrane protein 59 [Source:NCBI gene;Acc:424656]
46. GFPT1 ENSGALG00000036391 14025 0.942 - - - - - - - 0.942 - - glutamine--fructose-6-phosphate transaminase 1 [Source:NCBI gene;Acc:419514]
47. MED24 ENSGALG00000013506 5403 0.942 - - - - - - - 0.942 - - mediator complex subunit 24 [Source:NCBI gene;Acc:426134]
48. PWWP2A ENSGALG00000038202 3686 0.942 - - - - - - - 0.942 - - PWWP domain containing 2A [Source:HGNC Symbol;Acc:HGNC:29406]
49. SLC25A1 ENSGALG00000041760 4744 0.942 - - - - - - - 0.942 - - solute carrier family 25 member 1, transcript variant X2
50. MTERFD1 MTERFD1 3640 0.942 - - - - - - - 0.942 - -
51. TCEA1 ENSGALG00000015274 2706 0.941 - - - - - - - 0.941 - - transcription elongation factor A1 [Source:NCBI gene;Acc:421119]
52. RNF214 ENSGALG00000036993 3729 0.94 - - - - - - - 0.940 - - ring finger protein 214 [Source:HGNC Symbol;Acc:HGNC:25335]
53. SMIM12 ENSGALG00000030261 5860 0.939 - - - - - - - 0.939 - - small integral membrane protein 12 [Source:NCBI gene;Acc:100858028]
54. GLG1 ENSGALG00000039818 6221 0.939 - - - - - - - 0.939 - - golgi glycoprotein 1 [Source:NCBI gene;Acc:396492]
55. SNAI2 ENSGALG00000030902 8201 0.939 - - - - - - - 0.939 - - snail family transcriptional repressor 2
56. SRP72 ENSGALG00000011403 13666 0.939 - - - - - - - 0.939 - - signal recognition particle 72 [Source:NCBI gene;Acc:422626]
57. PIGK ENSGALG00000009015 7942 0.938 - - - - - - - 0.938 - - phosphatidylinositol glycan anchor biosynthesis class K [Source:NCBI gene;Acc:424556]
58. ENSGALG00000003150 ENSGALG00000003150 10001 0.937 - - - - - - - 0.937 - -
59. BCLAF1 ENSGALG00000013935 7596 0.936 - - - - - - - 0.936 - - BCL2 associated transcription factor 1 [Source:HGNC Symbol;Acc:HGNC:16863]
60. FXR1 ENSGALG00000008864 10250 0.935 - - - - - - - 0.935 - - FMR1 autosomal homolog 1 [Source:NCBI gene;Acc:424968]
61. XPO6 ENSGALG00000035360 7042 0.935 - - - - - - - 0.935 - - exportin 6 [Source:HGNC Symbol;Acc:HGNC:19733]
62. CEP170 ENSGALG00000010733 4177 0.935 - - - - - - - 0.935 - - centrosomal protein 170 [Source:HGNC Symbol;Acc:HGNC:28920]
63. RDM1 ENSGALG00000000243 3388 0.935 - - - - - - - 0.935 - - RAD52 motif containing 1 [Source:NCBI gene;Acc:395228]
64. PEO1 PEO1 6747 0.934 - - - - - - - 0.934 - -
65. MAPK9 ENSGALG00000039099 5467 0.932 - - - - - - - 0.932 - - mitogen-activated protein kinase 9 [Source:NCBI gene;Acc:395983]
66. BRCC3 ENSGALG00000005383 4844 0.932 - - - - - - - 0.932 - - BRCA1/BRCA2-containing complex subunit 3 [Source:HGNC Symbol;Acc:HGNC:24185]
67. ACSL1 ENSGALG00000010628 2560 0.932 - - - - - - - 0.932 - - acyl-CoA synthetase long chain family member 1 [Source:NCBI gene;Acc:422547]
68. CHAF1A ENSGALG00000001126 6506 0.932 - - - - - - - 0.932 - - chromatin assembly factor 1 subunit A [Source:NCBI gene;Acc:770217]
69. CPQ ENSGALG00000030866 3962 0.932 - - - - - - - 0.932 - - carboxypeptidase Q [Source:NCBI gene;Acc:420238]
70. EDEM1 ENSGALG00000008320 3117 0.931 - - - - - - - 0.931 - - ER degradation enhancing alpha-mannosidase like protein 1 [Source:NCBI gene;Acc:416110]
71. ARFRP1 ENSGALG00000006101 3743 0.931 - - - - - - - 0.931 - - ADP ribosylation factor related protein 1 [Source:HGNC Symbol;Acc:HGNC:662]
72. FGFR1OP ENSGALG00000011423 2418 0.931 - - - - - - - 0.931 - - FGFR1 oncogene partner [Source:HGNC Symbol;Acc:HGNC:17012]
73. ATG4C ENSGALG00000010985 6102 0.93 - - - - - - - 0.930 - - autophagy related 4C cysteine peptidase [Source:HGNC Symbol;Acc:HGNC:16040]
74. CCDC61 ENSGALG00000006714 8066 0.929 - - - - - - - 0.929 - - coiled-coil domain containing 61 [Source:NCBI gene;Acc:424880]
75. NET1 ENSGALG00000008437 9850 0.929 - - - - - - - 0.929 - - neuroepithelial cell transforming 1 [Source:NCBI gene;Acc:416693]
76. KHDRBS1 ENSGALG00000003272 4249 0.928 - - - - - - - 0.928 - - KH RNA binding domain containing, signal transduction associated 1 [Source:NCBI gene;Acc:374071]
77. NAE1 ENSGALG00000038957 13777 0.927 - - - - - - - 0.927 - - NEDD8 activating enzyme E1 subunit 1 [Source:NCBI gene;Acc:415792]
78. VCAN ENSGALG00000015624 11489 0.927 - - - - - - - 0.927 - - versican [Source:NCBI gene;Acc:395565]
79. UCK2 ENSGALG00000003510 2512 0.926 - - - - - - - 0.926 - - uridine-cytidine kinase 2 [Source:NCBI gene;Acc:424406]
80. SMC6 ENSGALG00000016467 3321 0.925 - - - - - - - 0.925 - - Gallus gallus structural maintenance of chromosomes 6 (SMC6), mRNA. [Source:RefSeq mRNA;Acc:NM_001321614]
81. NR2F2 ENSGALG00000007000 4911 0.925 - - - - - - - 0.925 - - nuclear receptor subfamily 2 group F member 2 [Source:NCBI gene;Acc:386585]
82. ZC3H3 ENSGALG00000043265 1638 0.925 - - - - - - - 0.925 - - zinc finger CCCH-type containing 3 [Source:NCBI gene;Acc:430349]
83. BID ENSGALG00000013039 12427 0.924 - - - - - - - 0.924 - - BH3 interacting domain death agonist [Source:NCBI gene;Acc:395236]
84. GOLGB1 ENSGALG00000041494 2376 0.924 - - - - - - - 0.924 - - golgin B1 [Source:HGNC Symbol;Acc:HGNC:4429]
85. HPCAL1 ENSGALG00000016443 6633 0.923 - - - - - - - 0.923 - - hippocalcin like 1 [Source:NCBI gene;Acc:396161]
86. CARS2 ENSGALG00000016847 3814 0.922 - - - - - - - 0.922 - - cysteinyl-tRNA synthetase 2, mitochondrial [Source:HGNC Symbol;Acc:HGNC:25695]
87. DUSP14 ENSGALG00000027641 3662 0.921 - - - - - - - 0.921 - - dual specificity phosphatase 14 [Source:HGNC Symbol;Acc:HGNC:17007]
88. ZNF326 ENSGALG00000006113 15141 0.921 - - - - - - - 0.921 - - zinc finger protein 326 [Source:NCBI gene;Acc:424512]
89. DNAJA1 ENSGALG00000023066 3820 0.921 - - - - - - - 0.921 - - DnaJ heat shock protein family (Hsp40) member A1 [Source:NCBI gene;Acc:427376]
90. TRMT44 ENSGALG00000015594 1490 0.919 - - - - - - - 0.919 - - tRNA methyltransferase 44 homolog [Source:HGNC Symbol;Acc:HGNC:26653]
91. STX18 ENSGALG00000015012 1489 0.919 - - - - - - - 0.919 - - syntaxin 18 [Source:NCBI gene;Acc:422848]
92. REV3L ENSGALG00000015033 1917 0.919 - - - - - - - 0.919 - - REV3 like, DNA directed polymerase zeta catalytic subunit [Source:HGNC Symbol;Acc:HGNC:9968]
93. PYCR1 ENSGALG00000007300 7987 0.919 - - - - - - - 0.919 - - pyrroline-5-carboxylate reductase 1 [Source:NCBI gene;Acc:769203]
94. BTG1L ENSGALG00000004676 2293 0.918 - - - - - - - 0.918 - - protein BTG1-like
95. SMARCC1 ENSGALG00000032642 4842 0.918 - - - - - - - 0.918 - - SWI/SNF related, matrix associated, actin dependent regulator of chromatin subfamily c member 1 [Source:HGNC Symbol;Acc:HGNC:11104]
96. DPYD ENSGALG00000005509 4115 0.918 - - - - - - - 0.918 - - dihydropyrimidine dehydrogenase [Source:HGNC Symbol;Acc:HGNC:3012]
97. CENPH ENSGALG00000014788 10601 0.917 - - - - - - - 0.917 - - centromere protein H [Source:NCBI gene;Acc:395316]
98. ENSGALG00000014190 ENSGALG00000014190 5735 0.917 - - - - - - - 0.917 - -
99. TUBAL3 ENSGALG00000008444 2979 0.917 - - - - - - - 0.917 - - tubulin alpha like 3 [Source:NCBI gene;Acc:416694]
100. TMEM57 ENSGALG00000001067 3367 0.917 - - - - - - - 0.917 - - transmembrane protein 57 [Source:NCBI gene;Acc:419590]

There are 607 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA